Wall clock time and date at job start Fri Apr 10 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47138 * 240.00238 * 3 2 1 5 5 H 1.48504 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47035 * 120.00052 * 3 2 1 7 7 C 1.38953 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99714 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00366 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46823 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00261 * 180.02562 * 13 12 10 15 15 O 1.21593 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.47571 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.39005 * 120.04435 * 180.02562 * 16 14 13 18 18 C 1.39487 * 120.17957 * 179.97438 * 17 16 14 19 19 S 1.75937 * 130.38758 * 179.97438 * 18 17 16 20 20 C 1.75299 * 92.18002 * 180.02562 * 19 18 17 21 21 C 1.32023 * 111.37038 * 0.02562 * 20 19 18 22 22 C 1.39896 * 119.93152 * 359.97438 * 18 17 16 23 23 C 1.41792 * 119.04494 * 359.97438 * 22 18 17 24 24 O 1.35896 * 119.71077 * 180.02562 * 23 22 18 25 25 C 1.36176 * 120.57988 * 0.04581 * 23 22 18 26 26 H 0.97000 * 120.00065 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00264 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47152 * 60.00788 * 12 10 9 29 29 H 1.08990 * 109.47440 * 300.00115 * 12 10 9 30 30 H 0.97000 * 120.00200 * 0.02562 * 13 12 10 31 31 H 1.07997 * 119.91579 * 359.69938 * 17 16 14 32 32 H 1.08000 * 124.31495 * 180.02562 * 20 19 18 33 33 H 1.08001 * 122.53003 * 179.97438 * 21 20 19 34 34 H 0.96699 * 114.00559 * 270.02321 * 24 23 22 35 35 H 1.07999 * 119.82533 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8630 0.0034 13 7 2.1958 -5.9764 0.0036 14 6 1.7466 -7.2471 0.0046 15 8 0.5512 -7.4694 0.0048 16 6 2.7056 -8.3688 0.0054 17 6 2.2433 -9.6797 0.0059 18 6 3.1473 -10.7420 0.0061 19 16 2.8654 -12.4787 0.0073 20 6 4.5838 -12.8251 0.0075 21 6 5.2984 -11.7150 0.0073 22 6 4.5230 -10.4880 0.0054 23 6 4.9748 -9.1440 0.0038 24 8 6.3082 -8.8817 0.0025 25 6 4.0843 -8.1137 0.0040 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3907 0.0016 28 1 0.6162 -4.9213 -0.8859 29 1 0.6182 -4.9201 0.8940 30 1 3.1495 -5.7992 0.0031 31 1 1.1814 -9.8763 0.0105 32 1 5.0044 -13.8199 0.0078 33 1 6.3784 -11.7195 0.0078 34 1 6.6949 -8.8053 0.8855 35 1 4.4419 -7.0947 0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:48 Heat of formation + Delta-G solvation = -92.724461 kcal Electronic energy + Delta-G solvation = -22741.113486 eV Core-core repulsion = 19022.689130 eV Total energy + Delta-G solvation = -3718.424357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66251 -40.62434 -39.81980 -37.88646 -36.30077 -36.14351 -35.40835 -33.39130 -31.47088 -30.68425 -29.08952 -26.60561 -25.38095 -23.96776 -22.44017 -21.47516 -21.34972 -20.35660 -19.93963 -18.36512 -18.03819 -17.62356 -17.23822 -16.87094 -16.81708 -16.44332 -16.39402 -15.90417 -15.68237 -15.44484 -15.10807 -14.91588 -14.40593 -14.09129 -13.97368 -13.65112 -13.55092 -13.51420 -12.90585 -12.61742 -12.47494 -12.30216 -12.24811 -12.13813 -11.71429 -11.56929 -11.19792 -10.64132 -10.58402 -10.34157 -10.10341 -9.71263 -8.75883 -8.51455 -6.01805 -0.79483 -0.04814 0.38585 0.91193 0.92897 1.37830 1.42881 1.53641 1.72311 1.89425 1.89720 2.30243 2.51123 3.03484 3.08428 3.15664 3.40724 3.61913 3.78588 3.95759 4.15667 4.22727 4.35748 4.40047 4.41154 4.57402 4.68603 4.84846 5.01578 5.09072 5.15088 5.27086 5.37686 5.39411 5.90509 6.35101 6.47458 6.73383 6.97478 7.02742 7.42695 7.92792 8.65101 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.002329 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.447672 B =12017.199260 C =12908.967494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.119 3.881 13 N -0.700 5.700 14 C 0.562 3.438 15 O -0.570 6.570 16 C -0.113 4.113 17 C -0.030 4.030 18 C -0.158 4.158 19 S 0.115 5.885 20 C -0.173 4.173 21 C -0.126 4.126 22 C -0.085 4.085 23 C 0.146 3.854 24 O -0.495 6.495 25 C -0.122 4.122 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.414 0.586 31 H 0.142 0.858 32 H 0.206 0.794 33 H 0.171 0.829 34 H 0.415 0.585 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -24.820 1.804 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.008 4.008 13 N -0.353 5.353 14 C 0.350 3.650 15 O -0.451 6.451 16 C -0.119 4.119 17 C -0.053 4.053 18 C -0.273 4.273 19 S 0.379 5.621 20 C -0.307 4.307 21 C -0.155 4.155 22 C -0.096 4.096 23 C 0.099 3.901 24 O -0.309 6.309 25 C -0.143 4.143 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.223 0.777 33 H 0.189 0.811 34 H 0.275 0.725 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.198 -25.776 1.213 26.790 hybrid contribution 1.289 2.140 0.442 2.537 sum 8.487 -23.636 1.654 25.168 Atomic orbital electron populations 1.69674 1.07003 1.29734 1.49127 1.26139 0.96547 1.02710 0.95741 0.84925 0.77719 0.76212 0.79125 1.19506 1.19664 1.19419 1.19705 0.92996 0.83497 1.50500 0.89498 1.41831 1.09628 1.04576 1.63280 1.20366 0.88121 0.85865 0.83735 1.90472 1.15114 1.87500 1.58094 1.20859 0.91578 0.83625 1.04735 1.45605 1.11675 1.04391 1.73665 1.18284 0.87966 0.82756 0.76012 1.90758 1.17156 1.85203 1.51998 1.19380 0.92911 0.92719 1.06922 1.20584 0.99912 0.89277 0.95491 1.22696 0.96120 0.99428 1.09067 1.84283 1.06280 0.94111 1.77434 1.25650 0.95540 1.04143 1.05359 1.21074 1.02115 0.88656 1.03679 1.20076 0.92137 0.94689 1.02666 1.17680 0.84090 0.89113 0.99184 1.84782 1.17406 1.93012 1.35714 1.21178 0.91564 1.00605 1.00971 0.91039 0.76636 0.88353 0.88211 0.74657 0.84007 0.77726 0.81138 0.72496 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.43 13.05 21.66 0.28 -48.14 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.82 5.29 -306.98 -1.62 -29.44 16 10 C 0.43 19.79 7.85 87.66 0.69 20.48 16 11 O -0.62 -31.90 15.24 -3.06 -0.05 -31.95 16 12 C 0.12 4.35 6.15 85.63 0.53 4.87 16 13 N -0.70 -23.47 5.48 -469.98 -2.57 -26.04 16 14 C 0.56 18.34 7.76 86.71 0.67 19.01 16 15 O -0.57 -21.45 16.32 -4.01 -0.07 -21.51 16 16 C -0.11 -3.08 5.87 -20.15 -0.12 -3.20 16 17 C -0.03 -0.74 9.62 22.76 0.22 -0.52 16 18 C -0.16 -3.37 6.46 22.97 0.15 -3.22 16 19 S 0.11 1.77 23.24 -56.49 -1.31 0.45 16 20 C -0.17 -1.92 11.03 66.90 0.74 -1.18 16 21 C -0.13 -1.74 10.25 23.12 0.24 -1.50 16 22 C -0.09 -1.70 6.04 -20.22 -0.12 -1.82 16 23 C 0.15 3.05 6.71 22.67 0.15 3.20 16 24 O -0.50 -8.37 13.38 -92.39 -1.24 -9.61 16 25 C -0.12 -2.92 9.36 22.27 0.21 -2.71 16 26 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 28 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.41 13.60 5.45 -92.71 -0.51 13.10 16 31 H 0.14 3.52 7.62 -2.91 -0.02 3.49 16 32 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.41 2.94 9.06 -74.06 -0.67 2.27 16 35 H 0.14 3.37 6.38 -2.91 -0.02 3.35 16 Total: -1.00 -69.36 329.43 -0.62 -69.99 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.71 Total: 37.04 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 4.63 Total: 15.67 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.91 Total: -103.63 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -1.35 Total: -63.06 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.31 Total: 0.45 kcal Total: -69.36 -0.62 -69.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.738 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds