Wall clock time and date at job start Fri Apr 10 2020 18:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47418 * 239.99930 * 3 2 1 5 5 H 1.48497 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47087 * 120.00717 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00125 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99807 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00149 * 180.02562 * 11 10 9 14 14 O 1.45197 * 109.47059 * 180.02562 * 13 11 10 15 15 C 1.34737 * 116.99906 * 180.02562 * 14 13 11 16 16 O 1.21488 * 120.00046 * 359.97438 * 15 14 13 17 17 C 1.47579 * 119.99735 * 179.97438 * 15 14 13 18 18 C 1.40043 * 119.97570 * 359.97438 * 17 15 14 19 19 C 1.36585 * 120.45981 * 180.02562 * 18 17 15 20 20 C 1.38812 * 120.21319 * 0.02562 * 19 18 17 21 21 O 1.35179 * 133.64278 * 180.02562 * 20 19 18 22 22 C 1.34397 * 108.24887 * 179.97438 * 21 20 19 23 23 O 1.35176 * 124.90965 * 179.97438 * 22 21 20 24 24 N 1.30592 * 110.18008 * 359.74200 * 22 21 20 25 25 C 1.36214 * 108.67922 * 0.41500 * 24 22 21 26 26 C 1.39205 * 133.66058 * 179.88986 * 25 24 22 27 27 H 0.97000 * 120.00071 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46931 * 60.00460 * 9 7 2 29 29 H 1.09000 * 109.47108 * 300.00342 * 9 7 2 30 30 H 0.97001 * 120.00063 * 0.02562 * 10 9 7 31 31 H 1.08994 * 109.47155 * 60.00156 * 13 11 10 32 32 H 1.09004 * 109.46854 * 300.00717 * 13 11 10 33 33 H 1.08001 * 119.76997 * 0.03883 * 18 17 15 34 34 H 1.07997 * 119.88970 * 180.02562 * 19 18 17 35 35 H 0.96698 * 113.99760 * 359.97438 * 23 22 21 36 36 H 1.08003 * 120.26543 * 359.65507 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7333 -6.0288 0.0006 14 8 2.0073 -7.2863 0.0005 15 6 2.7411 -8.4162 0.0015 16 8 3.9544 -8.3526 0.0020 17 6 2.0711 -9.7312 0.0020 18 6 0.6726 -9.8038 0.0020 19 6 0.0422 -11.0155 0.0030 20 6 0.7840 -12.1888 0.0046 21 8 0.4557 -13.5001 0.0054 22 6 1.5916 -14.2184 0.0063 23 8 1.6531 -15.5687 0.0078 24 7 2.6275 -13.4231 0.0007 25 6 2.1877 -12.1339 0.0051 26 6 2.8306 -10.8992 0.0044 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8904 29 1 0.6247 -2.5571 0.8897 30 1 3.1568 -3.4354 -0.0002 31 1 3.3598 -5.9707 0.8905 32 1 3.3601 -5.9713 -0.8894 33 1 0.0884 -8.8954 0.0009 34 1 -1.0368 -11.0608 0.0025 35 1 0.7885 -16.0018 0.0086 36 1 3.9094 -10.8472 0.0051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805655215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:51 Heat of formation + Delta-G solvation = -114.501815 kcal Electronic energy + Delta-G solvation = -24592.861314 eV Core-core repulsion = 20430.739750 eV Total energy + Delta-G solvation = -4162.121564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.85533 -40.73900 -39.15093 -38.72226 -37.87290 -36.40561 -35.25740 -34.27973 -32.43718 -31.51187 -30.28898 -29.08180 -26.79651 -25.05677 -23.90489 -22.71955 -22.41627 -21.64783 -20.27020 -19.98366 -18.55901 -18.06757 -17.78705 -17.54021 -16.85512 -16.68614 -15.93305 -15.83263 -15.32048 -15.19355 -14.72604 -14.70054 -14.56973 -14.35220 -14.21486 -13.50934 -13.26589 -13.07165 -12.75803 -12.60704 -12.04803 -11.99576 -11.81298 -11.60126 -11.05267 -10.97631 -10.92563 -10.83466 -10.76687 -10.36292 -9.47642 -9.40184 -9.22650 -8.83894 -8.79831 -8.01958 -6.21260 -4.28843 0.13873 0.27669 1.34470 1.85508 2.13763 2.22506 2.55302 3.13149 3.23369 3.23932 3.28480 3.29751 3.86129 3.88603 4.26876 4.30644 4.43587 4.45140 4.65979 4.76280 5.00868 5.14780 5.15878 5.19783 5.30174 5.47740 5.51987 5.67351 5.75922 5.92537 6.15873 6.18472 7.12975 7.19457 7.26873 7.43252 7.50350 7.59949 7.89972 8.46651 8.68227 8.92794 9.37603 10.88756 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.049285 B = 0.001852 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.988173 B =15119.102003 C =15666.642801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.322 6.322 15 C 0.513 3.487 16 O -0.502 6.502 17 C -0.112 4.112 18 C -0.042 4.042 19 C -0.093 4.093 20 C 0.037 3.963 21 O -0.242 6.242 22 C 0.438 3.562 23 O -0.389 6.389 24 N -0.467 5.467 25 C 0.032 3.968 26 C 0.005 3.995 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.427 0.573 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -27.798 0.023 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.237 6.237 15 C 0.357 3.643 16 O -0.391 6.391 17 C -0.114 4.114 18 C -0.060 4.060 19 C -0.111 4.111 20 C -0.013 4.013 21 O -0.138 6.138 22 C 0.188 3.812 23 O -0.189 6.189 24 N -0.214 5.214 25 C -0.079 4.079 26 C -0.014 4.014 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.183 0.817 34 H 0.165 0.835 35 H 0.284 0.716 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.080 -27.980 0.016 28.057 hybrid contribution -0.250 0.755 0.004 0.795 sum 1.831 -27.225 0.020 27.286 Atomic orbital electron populations 1.69960 1.06116 1.27543 1.48561 1.24947 0.94937 0.99485 0.94574 0.86445 0.79392 0.82162 0.78734 1.20029 1.21049 1.20034 1.21175 0.93320 0.90315 1.53690 0.91791 1.19178 0.88144 0.81495 0.98050 1.46367 1.11575 1.05330 1.72310 1.19854 0.89080 0.83968 0.78788 1.90704 1.16286 1.84554 1.49685 1.22928 0.94438 0.80502 1.04906 1.86577 1.39814 1.13833 1.83460 1.20839 0.85492 0.84844 0.73157 1.90866 1.14607 1.87939 1.45661 1.18833 0.93760 0.89951 1.08886 1.21198 0.93145 0.98148 0.93543 1.19618 1.00764 0.86801 1.03950 1.20205 0.95053 0.81762 1.04315 1.84491 1.35552 1.17301 1.76452 1.23044 0.79140 0.85438 0.93611 1.85196 1.36142 1.07478 1.90098 1.70924 1.25237 0.98994 1.26199 1.19332 0.90491 0.91581 1.06486 1.20294 1.01348 0.86752 0.93026 0.92306 0.95213 0.95224 0.77372 0.88213 0.88219 0.81738 0.83463 0.71581 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.42 5.43 -5.19 -0.03 6.39 16 10 N -0.71 -14.06 5.55 -61.47 -0.34 -14.40 16 11 C 0.50 9.52 7.91 -10.98 -0.09 9.44 16 12 O -0.53 -12.39 16.50 -14.11 -0.23 -12.62 16 13 C 0.05 0.71 5.95 36.01 0.21 0.92 16 14 O -0.32 -4.69 8.98 -47.27 -0.42 -5.11 16 15 C 0.51 6.74 7.89 34.54 0.27 7.01 16 16 O -0.50 -7.38 16.12 -19.26 -0.31 -7.69 16 17 C -0.11 -1.22 5.87 -105.01 -0.62 -1.84 16 18 C -0.04 -0.39 9.54 -39.50 -0.38 -0.77 16 19 C -0.09 -0.74 9.99 -39.97 -0.40 -1.14 16 20 C 0.04 0.35 7.42 -38.52 -0.29 0.06 16 21 O -0.24 -1.94 10.78 -20.31 -0.22 -2.16 16 22 C 0.44 3.61 9.53 52.24 0.50 4.11 16 23 O -0.39 -1.74 13.62 -40.51 -0.55 -2.29 16 24 N -0.47 -5.30 11.38 -12.82 -0.15 -5.44 16 25 C 0.03 0.34 7.22 -84.72 -0.61 -0.27 16 26 C 0.00 0.05 9.64 -38.82 -0.37 -0.32 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.17 1.47 7.58 -52.49 -0.40 1.07 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.43 -0.91 9.06 45.56 0.41 -0.50 16 36 H 0.16 1.62 7.64 -52.48 -0.40 1.21 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -35.93 337.34 -6.01 -41.94 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.37 Total: 1.50 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -2.21 Total: 10.53 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.25 Total: -44.58 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.74 Total: -29.88 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.93 -6.01 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805655215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.563 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds