Wall clock time and date at job start Fri Apr 10 2020 18:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47418 * 239.99930 * 3 2 1 5 5 H 1.48497 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47087 * 120.00717 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00125 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99807 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00149 * 180.02562 * 11 10 9 14 14 O 1.45197 * 109.47059 * 180.02562 * 13 11 10 15 15 C 1.34737 * 116.99906 * 180.02562 * 14 13 11 16 16 O 1.21488 * 120.00046 * 359.97438 * 15 14 13 17 17 C 1.47579 * 119.99735 * 179.97438 * 15 14 13 18 18 C 1.40043 * 119.97570 * 359.97438 * 17 15 14 19 19 C 1.36585 * 120.45981 * 180.02562 * 18 17 15 20 20 C 1.38812 * 120.21319 * 0.02562 * 19 18 17 21 21 O 1.35179 * 133.64278 * 180.02562 * 20 19 18 22 22 C 1.34397 * 108.24887 * 179.97438 * 21 20 19 23 23 O 1.35176 * 124.90965 * 179.97438 * 22 21 20 24 24 N 1.30592 * 110.18008 * 359.74200 * 22 21 20 25 25 C 1.36214 * 108.67922 * 0.41500 * 24 22 21 26 26 C 1.39205 * 133.66058 * 179.88986 * 25 24 22 27 27 H 0.97000 * 120.00071 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46931 * 60.00460 * 9 7 2 29 29 H 1.09000 * 109.47108 * 300.00342 * 9 7 2 30 30 H 0.97001 * 120.00063 * 0.02562 * 10 9 7 31 31 H 1.08994 * 109.47155 * 60.00156 * 13 11 10 32 32 H 1.09004 * 109.46854 * 300.00717 * 13 11 10 33 33 H 1.08001 * 119.76997 * 0.03883 * 18 17 15 34 34 H 1.07997 * 119.88970 * 180.02562 * 19 18 17 35 35 H 0.96698 * 113.99760 * 359.97438 * 23 22 21 36 36 H 1.08003 * 120.26543 * 359.65507 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7333 -6.0288 0.0006 14 8 2.0073 -7.2863 0.0005 15 6 2.7411 -8.4162 0.0015 16 8 3.9544 -8.3526 0.0020 17 6 2.0711 -9.7312 0.0020 18 6 0.6726 -9.8038 0.0020 19 6 0.0422 -11.0155 0.0030 20 6 0.7840 -12.1888 0.0046 21 8 0.4557 -13.5001 0.0054 22 6 1.5916 -14.2184 0.0063 23 8 1.6531 -15.5687 0.0078 24 7 2.6275 -13.4231 0.0007 25 6 2.1877 -12.1339 0.0051 26 6 2.8306 -10.8992 0.0044 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8904 29 1 0.6247 -2.5571 0.8897 30 1 3.1568 -3.4354 -0.0002 31 1 3.3598 -5.9707 0.8905 32 1 3.3601 -5.9713 -0.8894 33 1 0.0884 -8.8954 0.0009 34 1 -1.0368 -11.0608 0.0025 35 1 0.7885 -16.0018 0.0086 36 1 3.9094 -10.8472 0.0051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805655215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:50 Heat of formation + Delta-G solvation = -144.739824 kcal Electronic energy + Delta-G solvation = -24594.172533 eV Core-core repulsion = 20430.739750 eV Total energy + Delta-G solvation = -4163.432783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.52976 -41.81403 -40.43067 -39.57488 -38.56640 -37.53554 -36.15073 -35.96208 -34.39043 -32.30068 -31.19907 -30.42625 -28.49880 -25.98935 -24.57851 -24.52269 -23.17424 -22.58801 -21.61895 -20.91332 -19.53869 -18.98736 -18.83745 -18.43821 -18.15335 -17.82135 -17.39683 -16.96498 -16.48240 -16.35960 -16.18568 -15.94627 -15.30296 -15.24456 -14.88865 -14.70047 -14.55116 -14.22784 -14.03321 -13.78799 -13.77136 -13.50633 -12.94302 -12.78136 -12.67036 -12.28769 -12.22634 -11.92581 -11.92076 -11.65608 -11.50182 -10.88281 -10.78551 -10.14955 -9.89414 -9.54036 -8.27634 -6.43886 -0.67372 -0.40952 0.72752 1.09224 1.12790 1.34394 1.46169 1.49158 1.57449 1.59239 1.96441 2.35338 2.44360 2.57259 3.07653 3.17296 3.44735 3.68799 3.72461 3.73357 3.95136 4.00799 4.09631 4.10933 4.46827 4.71755 4.88632 4.92894 5.02191 5.09073 5.16073 5.25362 5.26674 5.44478 5.65353 5.74349 5.84573 6.46494 6.60473 6.65160 6.80878 7.22870 7.38454 8.84043 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.049285 B = 0.001852 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.988173 B =15119.102003 C =15666.642801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.060 3.940 14 O -0.335 6.335 15 C 0.518 3.482 16 O -0.520 6.520 17 C -0.120 4.120 18 C -0.044 4.044 19 C -0.077 4.077 20 C 0.033 3.967 21 O -0.231 6.231 22 C 0.456 3.544 23 O -0.381 6.381 24 N -0.512 5.512 25 C 0.018 3.982 26 C -0.002 4.002 27 H 0.269 0.731 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.412 0.588 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.168 0.832 34 H 0.178 0.822 35 H 0.453 0.547 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 -28.768 0.025 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.287 3.713 12 O -0.461 6.461 13 C -0.016 4.016 14 O -0.250 6.250 15 C 0.364 3.636 16 O -0.410 6.410 17 C -0.122 4.122 18 C -0.063 4.063 19 C -0.095 4.095 20 C -0.018 4.018 21 O -0.128 6.128 22 C 0.206 3.794 23 O -0.186 6.186 24 N -0.260 5.260 25 C -0.092 4.092 26 C -0.021 4.021 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.249 0.751 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.196 0.804 35 H 0.317 0.683 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.051 -29.012 0.018 29.172 hybrid contribution -0.614 0.832 0.004 1.034 sum 2.437 -28.180 0.022 28.285 Atomic orbital electron populations 1.70119 1.08169 1.28635 1.49814 1.26020 0.95761 1.03766 0.93883 0.85226 0.77904 0.76764 0.79434 1.18755 1.21213 1.18765 1.21598 0.94438 0.90498 1.53080 0.89645 1.18622 0.88554 0.83703 0.94687 1.46038 1.11736 1.04751 1.72553 1.20622 0.89282 0.84610 0.76813 1.90682 1.18743 1.85260 1.51403 1.22810 0.92642 0.78686 1.07496 1.86565 1.40462 1.14203 1.83793 1.21104 0.85263 0.84892 0.72329 1.90851 1.15306 1.88074 1.46757 1.18744 0.94478 0.88778 1.10205 1.21240 0.92379 0.98888 0.93753 1.19873 1.02106 0.85666 1.01901 1.20400 0.94594 0.82579 1.04186 1.84514 1.35254 1.16691 1.76299 1.23108 0.78612 0.86404 0.91276 1.85219 1.38717 1.05438 1.89216 1.70857 1.26885 0.99595 1.28657 1.19430 0.91401 0.91568 1.06815 1.20229 1.01206 0.86933 0.93745 0.92236 0.98834 0.98844 0.75133 0.85520 0.85526 0.81479 0.80422 0.68296 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.56 -29.39 9.28 25.60 0.24 -29.15 16 8 H 0.09 4.03 7.60 -2.91 -0.02 4.00 16 9 C 0.27 14.06 5.43 85.63 0.46 14.52 16 10 N -0.70 -27.83 5.55 -466.78 -2.59 -30.42 16 11 C 0.50 19.06 7.91 87.66 0.69 19.76 16 12 O -0.58 -27.64 16.50 15.76 0.26 -27.38 16 13 C 0.06 1.63 5.95 71.24 0.42 2.05 16 14 O -0.34 -9.50 8.98 -50.08 -0.45 -9.95 16 15 C 0.52 13.33 7.89 70.29 0.55 13.88 16 16 O -0.52 -14.88 16.12 19.87 0.32 -14.56 16 17 C -0.12 -2.58 5.87 -20.11 -0.12 -2.70 16 18 C -0.04 -0.77 9.54 22.32 0.21 -0.56 16 19 C -0.08 -1.09 9.99 22.02 0.22 -0.87 16 20 C 0.03 0.57 7.42 22.95 0.17 0.74 16 21 O -0.23 -3.23 10.78 10.01 0.11 -3.12 16 22 C 0.46 6.75 9.53 130.43 1.24 7.99 16 23 O -0.38 -2.48 13.62 -62.29 -0.85 -3.33 16 24 N -0.51 -11.31 11.38 -422.84 -4.81 -16.12 16 25 C 0.02 0.38 7.22 39.24 0.28 0.67 16 26 C 0.00 -0.04 9.64 22.76 0.22 0.18 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.41 13.16 8.32 -92.71 -0.77 12.39 16 31 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.17 2.85 7.58 -2.91 -0.02 2.83 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.45 -3.35 9.06 -74.06 -0.67 -4.02 16 36 H 0.15 3.26 7.64 -2.91 -0.02 3.24 16 Total: -1.00 -80.03 337.34 -0.89 -80.92 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -0.26 Total: 7.71 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 5.07 Total: 27.28 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -7.12 Total: -100.99 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.61 Total: -58.35 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -80.03 -0.89 -80.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805655215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.815 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds