Wall clock time and date at job start Fri Apr 10 2020 18:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35950 * 117.00019 * 2 1 4 4 C 1.38191 * 120.01103 * 0.25966 * 3 2 1 5 5 C 1.39745 * 119.85461 * 180.27301 * 4 3 2 6 6 C 1.47379 * 120.06421 * 179.74101 * 5 4 3 7 7 N 1.29778 * 119.99972 * 179.73160 * 6 5 4 8 8 N 1.40099 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.36685 * 126.01309 * 89.99838 * 8 7 6 10 10 O 1.35654 * 126.00316 * 0.02562 * 9 8 7 11 11 N 1.30951 * 107.98967 * 179.75647 * 9 8 7 12 12 N 1.40089 * 108.01956 * 0.23933 * 11 9 8 13 13 C 1.30943 * 108.02827 * 359.97438 * 12 11 9 14 14 O 1.35650 * 126.00878 * 180.02562 * 13 12 11 15 15 C 1.39817 * 119.87733 * 359.46711 * 5 4 3 16 16 C 1.37759 * 120.01259 * 0.25549 * 15 5 4 17 17 C 1.38967 * 120.14488 * 0.02562 * 16 15 5 18 18 O 1.35694 * 119.93580 * 180.02562 * 17 16 15 19 19 C 1.34784 * 117.00118 * 354.38537 * 18 17 16 20 20 H 1.08001 * 119.99888 * 5.05848 * 19 18 17 21 21 C 1.38640 * 119.99754 * 185.06173 * 19 18 17 22 22 N 1.31564 * 120.00347 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99738 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47341 * 59.99956 * 23 21 19 25 25 H 1.48502 * 109.47224 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47221 * 299.99823 * 23 21 19 27 27 H 1.09001 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47044 * 300.00179 * 1 2 3 29 29 H 1.09001 * 109.47255 * 60.00058 * 1 2 3 30 30 H 1.07996 * 120.06911 * 0.03726 * 4 3 2 31 31 H 1.08001 * 119.99613 * 359.72100 * 6 5 4 32 32 H 0.96696 * 114.00125 * 269.71529 * 10 9 8 33 33 H 0.96698 * 114.00139 * 89.97606 * 14 13 12 34 34 H 1.07999 * 119.99902 * 180.27137 * 15 5 4 35 35 H 1.08003 * 119.93093 * 180.02562 * 16 15 5 36 36 H 0.96996 * 119.99649 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3704 0.0054 5 6 1.9316 3.6138 -0.0004 6 6 1.1337 4.8529 -0.0004 7 7 1.7273 6.0070 -0.0005 8 7 0.9687 7.1848 -0.0011 9 6 0.5331 7.8608 1.1042 10 8 0.7599 7.5092 2.3947 11 7 -0.1365 8.9104 0.6986 12 7 -0.1378 8.9089 -0.7023 13 6 0.5316 7.8588 -1.1070 14 8 0.7561 7.5046 -2.3970 15 6 3.3282 3.6802 -0.0004 16 6 4.0731 2.5214 0.0001 17 6 3.4396 1.2846 -0.0001 18 8 4.1776 0.1458 0.0008 19 6 5.5134 0.2822 -0.1156 20 1 5.9572 1.2668 -0.1219 21 6 6.3178 -0.8415 -0.2274 22 7 5.7771 -2.0409 -0.2203 23 14 8.1691 -0.6524 -0.3895 24 1 8.7012 0.0523 0.8044 25 1 8.7965 -1.9944 -0.4933 26 1 8.4814 0.1350 -1.6093 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2153 2.3154 0.0103 31 1 0.0549 4.8005 -0.0005 32 1 0.0809 6.9322 2.7703 33 1 1.5658 7.8772 -2.7720 34 1 3.8231 4.6401 -0.0004 35 1 5.1519 2.5743 0.0005 36 1 6.3399 -2.8270 -0.2988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814231974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:54 Heat of formation + Delta-G solvation = 1.041442 kcal Electronic energy + Delta-G solvation = -25518.121082 eV Core-core repulsion = 21393.302600 eV Total energy + Delta-G solvation = -4124.818482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.24576 -41.37013 -39.36413 -39.20657 -38.59597 -38.12760 -36.93314 -34.42810 -33.05714 -31.31206 -30.79569 -30.33906 -27.96618 -27.46350 -25.16113 -23.84483 -23.44648 -23.17311 -21.96744 -20.10389 -19.87201 -19.79720 -19.29048 -18.49681 -17.87289 -17.43074 -16.93183 -16.68154 -16.52944 -16.36068 -15.92457 -15.59170 -15.32622 -15.12062 -14.84608 -14.08654 -14.05236 -13.87034 -13.68331 -13.50679 -13.27697 -13.12829 -12.88846 -12.77741 -12.49377 -12.38154 -12.18476 -11.98573 -11.92212 -11.43926 -11.38084 -10.80623 -10.67029 -10.64149 -9.62505 -8.77069 -8.52625 -6.16721 -0.44175 0.35019 0.40049 0.51048 0.93618 1.13403 1.37283 1.48852 1.52983 2.09914 2.14467 2.30743 2.56083 2.74520 3.07338 3.25538 3.41266 3.75241 3.93652 4.00413 4.17119 4.22361 4.31921 4.44981 4.46359 4.48876 4.56795 4.74442 4.77943 4.85616 5.05478 5.26200 5.39525 5.50304 5.82422 5.91073 5.97404 6.14629 6.58853 6.65135 6.69332 6.90656 7.66277 8.68298 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002878 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.840283 B = 9726.359138 C =10575.318574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.040 3.960 4 C -0.103 4.103 5 C -0.141 4.141 6 C 0.242 3.758 7 N -0.307 5.307 8 N -0.379 5.379 9 C 0.416 3.584 10 O -0.434 6.434 11 N -0.322 5.322 12 N -0.322 5.322 13 C 0.416 3.584 14 O -0.435 6.435 15 C -0.030 4.030 16 C -0.228 4.228 17 C 0.121 3.879 18 O -0.202 6.202 19 C -0.416 4.416 20 H 0.111 0.889 21 C -0.016 4.016 22 N -0.908 5.908 23 Si 1.018 2.982 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.255 1.255 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.433 0.567 33 H 0.435 0.565 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 11.653 0.200 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C -0.006 4.006 4 C -0.123 4.123 5 C -0.145 4.145 6 C 0.039 3.961 7 N -0.113 5.113 8 N -0.184 5.184 9 C 0.106 3.894 10 O -0.237 6.237 11 N -0.169 5.169 12 N -0.169 5.169 13 C 0.106 3.894 14 O -0.239 6.239 15 C -0.050 4.050 16 C -0.248 4.248 17 C 0.066 3.934 18 O -0.106 6.106 19 C -0.492 4.492 20 H 0.128 0.872 21 C -0.216 4.216 22 N -0.544 5.544 23 Si 0.837 3.163 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.180 1.180 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.190 0.810 31 H 0.168 0.832 32 H 0.296 0.704 33 H 0.298 0.702 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.164 12.881 0.205 16.409 hybrid contribution 0.857 -1.819 -0.056 2.011 sum -9.306 11.062 0.148 14.457 Atomic orbital electron populations 1.23338 0.76769 1.05138 1.02485 1.86226 1.23223 1.26486 1.89802 1.18240 0.88761 0.86004 1.07564 1.21091 1.00624 0.88810 1.01819 1.17682 0.92190 0.89622 1.15051 1.25269 0.99429 0.90140 0.81272 1.76096 1.17992 0.91438 1.25787 1.48529 1.43347 1.20093 1.06418 1.21568 0.94721 0.90724 0.82424 1.84963 1.52644 1.70908 1.15160 1.78327 1.20070 1.17408 1.01076 1.78319 1.21913 1.15539 1.01114 1.21640 0.95386 0.90071 0.82350 1.84889 1.49834 1.73955 1.15190 1.21125 0.92924 0.97478 0.93475 1.20988 1.01175 0.90744 1.11877 1.19634 0.89853 0.87827 0.96050 1.84002 1.20277 1.27951 1.78323 1.21955 0.78725 0.95996 1.52487 0.87195 1.26627 1.06030 0.93546 0.95377 1.70192 1.38713 0.98843 1.46622 0.84654 0.73198 0.78395 0.80091 1.17937 1.19813 1.17964 0.87586 0.90949 0.91180 0.81049 0.83162 0.70428 0.70239 0.84097 0.84790 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -13.03 10.28 -79.02 -0.81 -13.84 16 3 C 0.04 1.47 6.70 22.57 0.15 1.62 16 4 C -0.10 -2.66 8.77 22.62 0.20 -2.46 16 5 C -0.14 -3.54 5.87 -20.12 -0.12 -3.66 16 6 C 0.24 4.68 10.82 87.40 0.95 5.63 16 7 N -0.31 -6.96 10.56 -52.23 -0.55 -7.51 16 8 N -0.38 -8.79 3.39 -422.62 -1.43 -10.22 16 9 C 0.42 9.78 9.40 179.60 1.69 11.47 16 10 O -0.43 -7.84 13.65 -89.69 -1.22 -9.06 16 11 N -0.32 -8.97 12.72 -173.38 -2.20 -11.17 16 12 N -0.32 -8.97 12.72 -173.40 -2.20 -11.18 16 13 C 0.42 9.78 9.40 179.60 1.69 11.47 16 14 O -0.44 -7.86 13.65 -89.65 -1.22 -9.09 16 15 C -0.03 -0.89 9.56 22.54 0.22 -0.67 16 16 C -0.23 -8.70 9.14 22.33 0.20 -8.49 16 17 C 0.12 5.42 6.67 22.76 0.15 5.57 16 18 O -0.20 -11.35 9.53 -7.68 -0.07 -11.42 16 19 C -0.42 -22.48 9.48 67.92 0.64 -21.83 16 20 H 0.11 5.30 5.19 -2.91 -0.02 5.29 16 21 C -0.02 -0.86 5.49 84.83 0.47 -0.39 16 22 N -0.91 -53.06 13.67 21.61 0.30 -52.76 16 23 Si 1.02 39.96 29.55 68.60 2.03 41.99 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 27 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.24 7.65 -2.38 -0.02 1.22 16 29 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 30 H 0.17 2.85 6.28 -2.91 -0.02 2.83 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.43 2.74 9.06 -74.06 -0.67 2.07 16 33 H 0.43 3.61 9.06 -74.06 -0.67 2.94 16 34 H 0.14 3.77 7.54 -2.91 -0.02 3.75 16 35 H 0.13 5.17 5.62 -2.91 -0.02 5.15 16 36 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -78.99 334.73 -0.20 -79.19 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.14 Total: 15.33 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 7.35 Total: -0.26 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -6.10 Total: -92.84 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -3.33 Total: -43.41 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -78.99 -0.20 -79.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814231974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.228 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds