Wall clock time and date at job start Fri Apr 10 2020 18:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46849 * 299.99693 * 3 2 1 6 6 H 1.48496 * 109.47083 * 59.99770 * 3 2 1 7 7 C 1.38662 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99422 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99659 * 185.34677 * 9 7 2 11 11 C 1.38897 * 120.06920 * 5.71831 * 10 9 7 12 12 C 1.38079 * 119.92746 * 179.71936 * 11 10 9 13 13 C 1.38318 * 120.07268 * 0.57651 * 12 11 10 14 14 C 1.38284 * 120.13575 * 359.67623 * 13 12 11 15 15 C 1.50695 * 119.96687 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47254 * 270.02393 * 15 14 13 17 17 O 1.21279 * 119.99832 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.40100 * 120.00381 * 179.43156 * 18 16 15 20 20 C 1.36371 * 125.96393 * 224.96652 * 19 18 16 21 21 O 1.35630 * 125.98869 * 359.95363 * 20 19 18 22 22 N 1.30905 * 108.02559 * 179.82350 * 20 19 18 23 23 N 1.40116 * 107.93695 * 0.42415 * 22 20 19 24 24 C 1.30911 * 107.93694 * 359.73113 * 23 22 20 25 25 O 1.35634 * 125.98219 * 179.97438 * 24 23 22 26 26 C 1.38125 * 120.06617 * 0.04430 * 14 13 12 27 27 H 0.96998 * 120.00558 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.03604 * 359.97438 * 11 10 9 29 29 H 1.08005 * 119.96065 * 180.27596 * 12 11 10 30 30 H 1.07993 * 119.93562 * 179.70211 * 13 12 11 31 31 H 1.09006 * 109.46906 * 30.02149 * 15 14 13 32 32 H 1.09000 * 109.47009 * 150.01861 * 15 14 13 33 33 H 0.97006 * 119.99789 * 359.42735 * 18 16 15 34 34 H 0.96701 * 113.99903 * 94.99157 * 21 20 19 35 35 H 0.96701 * 113.99772 * 270.04006 * 25 24 23 36 36 H 1.08004 * 120.02840 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3963 -1.2125 6 1 1.8907 2.3964 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0694 -3.5044 0.1138 11 6 3.4374 -3.4284 0.3419 12 6 4.1810 -4.5856 0.4624 13 6 3.5671 -5.8195 0.3443 14 6 2.2062 -5.8983 0.1120 15 6 1.5411 -7.2446 -0.0155 16 6 1.5582 -7.6787 -1.4585 17 8 2.0605 -6.9650 -2.3006 18 7 1.0153 -8.8601 -1.8133 19 7 1.0205 -9.2584 -3.1564 20 6 -0.0311 -9.7996 -3.8354 21 8 -1.2645 -10.0473 -3.3285 22 7 0.3576 -10.0356 -5.0629 23 7 1.6985 -9.6443 -5.1737 24 6 2.0797 -9.1778 -4.0115 25 8 3.3124 -8.6986 -3.7105 26 6 1.4559 -4.7444 -0.0038 27 1 -0.4851 0.8400 -0.0004 28 1 3.9183 -2.4653 0.4291 29 1 5.2440 -4.5272 0.6443 30 1 4.1516 -6.7231 0.4341 31 1 2.0790 -7.9743 0.5899 32 1 0.5099 -7.1746 0.3308 33 1 0.6209 -9.4348 -1.1385 34 1 -1.9048 -9.3407 -3.4890 35 1 3.9260 -9.3702 -3.3825 36 1 0.3930 -4.8068 -0.1849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820291332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:59 Heat of formation + Delta-G solvation = 22.770613 kcal Electronic energy + Delta-G solvation = -25854.659414 eV Core-core repulsion = 21730.783180 eV Total energy + Delta-G solvation = -4123.876234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.65938 -40.02819 -38.89682 -38.46829 -37.37634 -36.65674 -35.62966 -32.68825 -32.24377 -30.92441 -29.96546 -29.27331 -27.19011 -25.31044 -23.47966 -22.93484 -21.87817 -21.58341 -20.56163 -19.95317 -19.10762 -18.08748 -17.64391 -17.59659 -16.98124 -16.32253 -15.76115 -15.69925 -15.09809 -14.68079 -14.47972 -14.33867 -14.09807 -13.66364 -13.49236 -13.26917 -12.83949 -12.67316 -12.56567 -12.10768 -12.03649 -11.68406 -11.56118 -11.35434 -10.97903 -10.90793 -10.88679 -10.71387 -10.45583 -10.27659 -9.78117 -9.62409 -9.42684 -8.87935 -8.19707 -7.30152 -6.48432 -4.07379 0.61238 1.17765 1.72676 1.98897 2.24032 2.30274 2.53050 2.89205 3.10591 3.12195 3.17765 3.93563 4.07109 4.36971 4.53994 4.62288 4.85799 4.93587 5.02969 5.07360 5.13346 5.27099 5.48344 5.63908 5.82016 6.01116 6.09185 6.23962 6.51519 6.64834 6.69167 6.81812 7.00624 7.03086 7.12743 7.28919 7.36800 7.47388 7.72835 7.81216 7.96283 8.97450 9.66394 10.69686 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002804 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.289261 B = 9982.872545 C =10392.090677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.225 4.225 12 C -0.074 4.074 13 C -0.193 4.193 14 C -0.042 4.042 15 C -0.074 4.074 16 C 0.507 3.493 17 O -0.467 6.467 18 N -0.535 5.535 19 N -0.314 5.314 20 C 0.404 3.596 21 O -0.435 6.435 22 N -0.283 5.283 23 N -0.290 5.290 24 C 0.436 3.564 25 O -0.413 6.413 26 C -0.173 4.173 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.430 0.570 34 H 0.417 0.583 35 H 0.407 0.593 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -19.771 1.082 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.245 4.245 12 C -0.092 4.092 13 C -0.212 4.212 14 C -0.043 4.043 15 C -0.115 4.115 16 C 0.293 3.707 17 O -0.333 6.333 18 N -0.292 5.292 19 N -0.122 5.122 20 C 0.094 3.906 21 O -0.235 6.235 22 N -0.128 5.128 23 N -0.136 5.136 24 C 0.127 3.873 25 O -0.211 6.211 26 C -0.192 4.192 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.273 0.727 34 H 0.276 0.724 35 H 0.264 0.736 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.850 -19.384 -1.039 19.500 hybrid contribution 0.188 1.006 1.879 2.140 sum 2.038 -18.378 0.841 18.510 Atomic orbital electron populations 1.70042 1.05969 1.27603 1.46133 1.25294 0.95857 0.98852 0.96507 0.85641 0.79171 0.80324 0.78276 1.19064 1.20101 1.20119 1.21368 0.91819 0.80772 1.52759 0.89029 1.83985 1.34235 1.11466 1.78464 1.19272 0.90368 0.87908 0.92451 1.21228 0.94336 0.99049 1.09848 1.20693 0.98450 0.92211 0.97857 1.20323 0.93509 0.96913 1.10498 1.18529 0.93599 0.91176 1.00990 1.20505 1.04043 0.97145 0.89820 1.21747 0.77658 0.78635 0.92687 1.90924 1.40452 1.50566 1.51376 1.45880 1.66329 1.22326 0.94665 1.46392 1.12138 1.50541 1.03099 1.21396 0.84201 0.97731 0.87321 1.84899 1.14595 1.46257 1.77796 1.78504 1.03340 1.22075 1.08883 1.78594 1.02914 1.18232 1.13831 1.21469 0.84145 0.95956 0.85776 1.85198 1.15255 1.35528 1.85087 1.19925 0.99524 0.89748 1.10022 0.92050 0.85478 0.87310 0.87816 0.87422 0.87299 0.72707 0.72365 0.73574 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.91 9.44 30.89 0.29 -10.62 16 8 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 9 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16 10 C 0.15 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.23 -4.85 9.13 -39.40 -0.36 -5.21 16 12 C -0.07 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -3.13 9.70 -39.54 -0.38 -3.51 16 14 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 15 C -0.07 -0.75 5.83 -29.04 -0.17 -0.92 16 16 C 0.51 6.06 7.67 -10.99 -0.08 5.97 16 17 O -0.47 -8.20 14.01 -15.33 -0.21 -8.41 16 18 N -0.54 -4.63 6.38 31.22 0.20 -4.43 16 19 N -0.31 -3.49 3.56 -15.24 -0.05 -3.54 16 20 C 0.40 4.39 9.38 -88.81 -0.83 3.56 16 21 O -0.44 -3.13 13.65 -18.59 -0.25 -3.38 16 22 N -0.28 -3.86 12.72 29.65 0.38 -3.48 16 23 N -0.29 -4.22 12.72 29.65 0.38 -3.84 16 24 C 0.44 5.63 8.50 -88.81 -0.75 4.88 16 25 O -0.41 -4.82 11.79 -39.49 -0.47 -5.29 16 26 C -0.17 -3.51 9.65 -39.40 -0.38 -3.89 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.13 2.75 5.71 -52.49 -0.30 2.45 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.43 2.00 8.83 -182.59 -1.61 0.39 16 34 H 0.42 1.17 9.06 45.56 0.41 1.59 16 35 H 0.41 2.21 9.06 45.56 0.41 2.63 16 36 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -39.24 331.59 -5.79 -45.03 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.61 Total: 4.56 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.88 Total: -8.21 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.66 Total: -39.71 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.93 Total: -22.14 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -39.24 -5.79 -45.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820291332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.803 kcal (2) G-P(sol) polarization free energy of solvation -39.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds