Wall clock time and date at job start Fri Apr 10 2020 18:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00581 * 2 1 4 4 O 1.20826 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00090 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.36877 * 119.99842 * 317.81153 * 6 5 3 8 8 H 1.08002 * 120.00255 * 321.69060 * 7 6 5 9 9 C 1.39017 * 119.99954 * 141.69386 * 7 6 5 10 10 N 1.31387 * 119.99967 * 334.04034 * 9 7 6 11 11 Si 1.86801 * 119.99889 * 154.03990 * 9 7 6 12 12 H 1.48505 * 109.46970 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47267 * 119.99732 * 11 9 7 14 14 H 1.48494 * 109.47077 * 240.00033 * 11 9 7 15 15 C 1.34777 * 120.00189 * 137.80725 * 6 5 3 16 16 O 1.21741 * 119.99953 * 185.99611 * 15 6 5 17 17 C 1.46583 * 119.99879 * 5.99948 * 15 6 5 18 18 C 1.37780 * 126.12023 * 52.04209 * 17 15 6 19 19 C 1.40785 * 106.89653 * 179.78438 * 18 17 15 20 20 C 1.48497 * 126.25168 * 180.26290 * 19 18 17 21 21 N 1.34038 * 126.66952 * 359.88674 * 20 19 18 22 22 N 1.28988 * 107.27256 * 179.83861 * 21 20 19 23 23 N 1.28733 * 108.93833 * 0.42967 * 22 21 20 24 24 H 0.96998 * 125.34361 * 179.72087 * 23 22 21 25 25 N 1.28873 * 109.31587 * 359.73030 * 23 22 21 26 26 C 1.36567 * 107.50312 * 0.41071 * 19 18 17 27 27 N 1.34854 * 108.83735 * 359.58443 * 26 19 18 28 28 H 0.96997 * 125.50382 * 180.22734 * 27 26 19 29 29 H 1.09004 * 109.47199 * 300.00655 * 1 2 3 30 30 H 1.09003 * 109.46737 * 59.99528 * 1 2 3 31 31 H 1.09001 * 109.47630 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46910 * 60.00713 * 5 3 2 33 33 H 1.09001 * 109.47318 * 300.00112 * 5 3 2 34 34 H 0.97002 * 120.00192 * 185.05451 * 10 9 7 35 35 H 1.07993 * 126.54786 * 0.02562 * 18 17 15 36 36 H 1.08000 * 125.58843 * 179.84342 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2746 0.0006 6 7 3.9819 2.6795 0.0011 7 6 3.3341 3.5850 -0.7950 8 1 3.0111 3.2997 -1.7853 9 6 3.0918 4.8721 -0.3289 10 7 2.9963 5.0961 0.9622 11 14 2.9022 6.2832 -1.5383 12 1 3.0510 5.7707 -2.9241 13 1 1.5583 6.8946 -1.3788 14 1 3.9459 7.3057 -1.2734 15 6 5.0020 3.0803 0.7855 16 8 5.2769 4.2633 0.8694 17 6 5.7804 2.0917 1.5375 18 6 6.3756 0.9622 1.0197 19 6 7.0176 0.3107 2.0900 20 6 7.7973 -0.9505 2.0096 21 7 8.0220 -1.6841 0.9106 22 7 8.7417 -2.6942 1.2648 23 7 8.9648 -2.6248 2.5307 24 1 9.4785 -3.2663 3.0460 25 7 8.3983 -1.5694 3.0062 26 6 6.7895 1.0486 3.2162 27 7 6.0470 2.1255 2.8883 28 1 5.7484 2.8127 3.5043 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9564 0.7804 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 2.7549 5.9785 1.2848 35 1 6.3569 0.6404 -0.0110 36 1 7.1486 0.8111 4.2067 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821662723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:01 Heat of formation + Delta-G solvation = 87.550115 kcal Electronic energy + Delta-G solvation = -26667.812663 eV Core-core repulsion = 22579.038230 eV Total energy + Delta-G solvation = -4088.774433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.26181 -40.92391 -39.66056 -37.84379 -35.69883 -34.25802 -33.96072 -33.34583 -31.98358 -30.50891 -28.89141 -28.40230 -26.25011 -24.86258 -24.48169 -23.79845 -21.66796 -20.42996 -20.11547 -19.70928 -18.70093 -17.88830 -16.97361 -16.74582 -16.56351 -15.88451 -15.43891 -15.00351 -14.54948 -14.46296 -14.22938 -13.89097 -13.64506 -13.49584 -13.15733 -12.73658 -12.40904 -12.35327 -12.09338 -11.90582 -11.58637 -11.40057 -11.25805 -11.22041 -10.94561 -10.93716 -10.81771 -10.64167 -10.15295 -10.14281 -9.52571 -8.86069 -8.50052 -8.37720 -7.73704 -7.20398 -6.10506 -3.71865 1.14528 1.78383 2.34410 2.38853 3.10066 3.12455 3.33834 3.41683 3.44570 3.46120 3.47571 4.03467 4.31116 4.37403 4.52167 4.93085 5.26789 5.30860 5.43461 5.52550 5.53081 5.55203 5.65275 5.70786 5.76256 5.85657 5.91988 6.08261 6.23692 6.43035 6.48205 6.96861 7.04854 7.19272 7.63196 7.70588 8.16803 8.33075 8.65034 8.92546 9.04191 9.57271 10.10417 10.99076 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.004187 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.208290 B = 6685.605947 C = 7957.860925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.431 3.569 4 O -0.442 6.442 5 C 0.111 3.889 6 N -0.420 5.420 7 C -0.330 4.330 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.811 5.811 11 Si 0.910 3.090 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.281 1.281 15 C 0.518 3.482 16 O -0.517 6.517 17 C 0.010 3.990 18 C -0.132 4.132 19 C -0.118 4.118 20 C 0.273 3.727 21 N -0.270 5.270 22 N -0.059 5.059 23 N -0.238 5.238 24 H 0.471 0.529 25 N -0.315 5.315 26 C 0.045 3.955 27 N -0.515 5.515 28 H 0.426 0.574 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.262 0.738 35 H 0.151 0.849 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 -14.511 5.582 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.296 6.296 3 C 0.269 3.731 4 O -0.322 6.322 5 C -0.014 4.014 6 N -0.142 5.142 7 C -0.457 4.457 8 H 0.102 0.898 9 C -0.130 4.130 10 N -0.444 5.444 11 Si 0.737 3.263 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.305 3.695 16 O -0.394 6.394 17 C -0.106 4.106 18 C -0.158 4.158 19 C -0.129 4.129 20 C -0.006 4.006 21 N -0.143 5.143 22 N -0.054 5.054 23 N -0.083 5.083 24 H 0.324 0.676 25 N -0.167 5.167 26 C -0.097 4.097 27 N -0.107 5.107 28 H 0.264 0.736 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.393 -13.786 5.522 15.800 hybrid contribution -0.389 0.801 0.533 1.038 sum 5.004 -12.985 6.055 15.176 Atomic orbital electron populations 1.23042 0.77978 1.02388 1.02112 1.86521 1.22244 1.35243 1.85605 1.24318 0.92725 0.81287 0.74732 1.90804 1.65717 1.35108 1.40552 1.21175 0.87014 0.89157 1.04057 1.43017 1.26639 1.04770 1.39813 1.18843 1.39796 0.91215 0.95803 0.89814 1.25015 0.93842 0.98954 0.95171 1.69890 1.38465 1.22282 1.13726 0.86186 0.77088 0.81872 0.81113 1.19476 1.21406 1.20705 1.16507 0.82137 0.86578 0.84314 1.90730 1.68219 1.16421 1.64068 1.21115 1.06739 0.99225 0.83501 1.21196 1.01623 0.93997 0.98954 1.16268 1.08066 0.93618 0.94914 1.22942 0.97087 0.96223 0.84349 1.76114 1.12604 1.00753 1.24874 1.78879 1.12531 1.17885 0.96123 1.47634 1.36020 1.18127 1.06494 0.67622 1.74914 1.15212 0.99871 1.26662 1.21613 0.99733 0.89214 0.99092 1.41846 1.39778 1.20397 1.08716 0.73590 0.92566 0.92429 0.89121 0.89153 0.88023 0.92846 0.83092 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.38 -6.50 10.56 -39.25 -0.41 -6.92 16 3 C 0.43 8.88 7.82 36.01 0.28 9.16 16 4 O -0.44 -10.89 14.11 -18.75 -0.26 -11.15 16 5 C 0.11 2.17 5.75 -5.19 -0.03 2.14 16 6 N -0.42 -10.20 2.77 -117.61 -0.33 -10.52 16 7 C -0.33 -8.96 6.62 -15.01 -0.10 -9.06 16 8 H 0.08 2.24 7.95 -52.49 -0.42 1.82 16 9 C 0.08 2.33 4.14 -17.45 -0.07 2.25 16 10 N -0.81 -23.79 11.57 55.50 0.64 -23.15 16 11 Si 0.91 22.24 29.63 -169.99 -5.04 17.21 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.52 12.62 7.03 -12.89 -0.09 12.53 16 16 O -0.52 -14.74 14.26 5.15 0.07 -14.67 16 17 C 0.01 0.19 5.68 -82.02 -0.47 -0.28 16 18 C -0.13 -2.24 9.10 -38.79 -0.35 -2.59 16 19 C -0.12 -1.78 6.09 -105.31 -0.64 -2.43 16 20 C 0.27 3.96 8.17 -156.30 -1.28 2.68 16 21 N -0.27 -4.06 12.54 32.16 0.40 -3.66 16 22 N -0.06 -0.73 13.47 60.35 0.81 0.09 16 23 N -0.24 -2.23 7.90 60.35 0.48 -1.75 16 24 H 0.47 1.95 8.96 -340.37 -3.05 -1.10 16 25 N -0.31 -3.79 12.39 32.18 0.40 -3.39 16 26 C 0.04 0.60 11.82 -16.83 -0.20 0.40 16 27 N -0.51 -8.05 6.05 -9.32 -0.06 -8.11 16 28 H 0.43 6.09 8.96 -40.82 -0.37 5.73 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.10 1.81 5.92 -51.93 -0.31 1.51 16 34 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 35 H 0.15 2.45 8.05 -52.49 -0.42 2.03 16 36 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -37.05 328.12 -6.04 -43.09 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.81 Total: 1.58 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -1.88 Total: 16.42 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 2.35 Total: -50.50 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.61 Total: -32.74 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.04 Total: 17.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.05 -6.04 -43.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821662723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.638 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds