Wall clock time and date at job start Fri Apr 10 2020 18:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99989 * 2 1 4 4 O 1.20825 * 119.99941 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99962 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47228 * 179.97438 * 5 3 2 7 7 C 1.36833 * 120.00194 * 273.66368 * 6 5 3 8 8 H 1.08000 * 119.99971 * 127.11020 * 7 6 5 9 9 C 1.39025 * 119.99562 * 307.10410 * 7 6 5 10 10 N 1.31382 * 120.00331 * 2.20374 * 9 7 6 11 11 Si 1.86804 * 119.99690 * 182.21129 * 9 7 6 12 12 H 1.48502 * 109.47145 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47189 * 119.99802 * 11 9 7 14 14 H 1.48503 * 109.46478 * 239.99869 * 11 9 7 15 15 C 1.34774 * 119.99609 * 93.65625 * 6 5 3 16 16 O 1.21762 * 120.00212 * 2.68851 * 15 6 5 17 17 C 1.46449 * 120.00200 * 182.68393 * 15 6 5 18 18 C 1.38175 * 126.02123 * 173.26727 * 17 15 6 19 19 C 1.39325 * 107.43949 * 179.73315 * 18 17 15 20 20 C 1.37814 * 107.66793 * 0.02562 * 19 18 17 21 21 C 1.47889 * 125.81783 * 179.97438 * 20 19 18 22 22 N 1.34218 * 126.70329 * 179.71395 * 21 20 19 23 23 N 1.28991 * 107.24699 * 179.86887 * 22 21 20 24 24 N 1.28713 * 108.99882 * 0.39786 * 23 22 21 25 25 H 0.97004 * 125.31556 * 179.76033 * 24 23 22 26 26 N 1.28872 * 109.37096 * 359.74790 * 24 23 22 27 27 N 1.36458 * 108.37175 * 359.97438 * 20 19 18 28 28 H 0.96991 * 125.72590 * 180.02562 * 27 20 19 29 29 H 1.09001 * 109.47550 * 60.00051 * 1 2 3 30 30 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47194 * 299.99785 * 1 2 3 32 32 H 1.09004 * 109.46894 * 60.00394 * 5 3 2 33 33 H 1.08994 * 109.47254 * 300.00345 * 5 3 2 34 34 H 0.97005 * 120.00059 * 180.02562 * 10 9 7 35 35 H 1.08003 * 126.28210 * 359.70750 * 18 17 15 36 36 H 1.08000 * 126.16791 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1036 3.3565 -1.1831 8 1 3.5936 4.2985 -1.3214 9 6 4.8841 2.8317 -2.2069 10 7 5.4695 1.6654 -2.0549 11 14 5.1005 3.7850 -3.7988 12 1 4.3435 5.0601 -3.7190 13 1 6.5413 4.0765 -4.0091 14 1 4.5883 2.9758 -4.9337 15 6 4.2437 3.3055 1.1644 16 8 4.1826 2.6902 2.2134 17 6 4.6018 4.7255 1.1683 18 6 4.7663 5.5190 2.2874 19 6 5.1088 6.7958 1.8473 20 6 5.1486 6.7668 0.4701 21 6 5.4715 7.9101 -0.4106 22 7 5.5206 7.9007 -1.7519 23 7 5.8338 9.0931 -2.1315 24 7 5.9887 9.8365 -1.0923 25 1 6.2299 10.7760 -1.1059 26 7 5.7733 9.1380 -0.0310 27 7 4.8394 5.5035 0.0574 28 1 4.7946 5.2037 -0.8640 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.9563 0.7805 -0.8892 33 1 3.9557 0.7808 0.8907 34 1 6.0143 1.2994 -2.7691 35 1 4.6502 5.2069 3.3148 36 1 5.3074 7.6536 2.4728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826138344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:09 Heat of formation + Delta-G solvation = 67.171521 kcal Electronic energy + Delta-G solvation = -26836.679061 eV Core-core repulsion = 22747.020946 eV Total energy + Delta-G solvation = -4089.658115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.30930 -40.64375 -39.71642 -38.07003 -35.80874 -34.98093 -34.22520 -33.18821 -31.92310 -30.59585 -29.35739 -28.16708 -26.47190 -25.32071 -24.47708 -23.78829 -21.50471 -20.46781 -19.80620 -19.37612 -19.21345 -18.39582 -17.03624 -16.98125 -16.40017 -15.91676 -15.62093 -15.43304 -14.83167 -14.36068 -14.17691 -14.13515 -13.36034 -13.23947 -13.11201 -12.83124 -12.51396 -12.49561 -12.10394 -11.81527 -11.79155 -11.51045 -11.43658 -11.27672 -11.24505 -11.03427 -10.85059 -10.71370 -10.48897 -10.25963 -9.76832 -9.43328 -9.01347 -8.45115 -7.83434 -7.45594 -6.72407 -4.70039 1.06689 1.58114 2.27119 2.56248 2.98024 3.03734 3.08820 3.13678 3.29621 3.44106 3.49220 3.84858 4.09589 4.31830 4.48771 4.59107 4.77092 5.43481 5.45269 5.50028 5.59844 5.63273 5.77544 5.86689 5.89821 5.99184 6.26835 6.40627 6.59907 6.63959 6.69702 6.98872 7.05195 7.24574 7.46780 7.59125 7.91528 8.09106 8.26231 8.53926 8.65777 9.07841 9.51821 10.27228 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.004676 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.913656 B = 5986.293667 C = 7111.176194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.505 6.505 5 C 0.120 3.880 6 N -0.423 5.423 7 C -0.364 4.364 8 H 0.091 0.909 9 C 0.059 3.941 10 N -0.848 5.848 11 Si 0.904 3.096 12 H -0.253 1.253 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.561 3.439 16 O -0.578 6.578 17 C 0.042 3.958 18 C -0.151 4.151 19 C -0.144 4.144 20 C 0.055 3.945 21 C 0.261 3.739 22 N -0.276 5.276 23 N -0.053 5.053 24 N -0.232 5.232 25 H 0.473 0.527 26 N -0.292 5.292 27 N -0.487 5.487 28 H 0.437 0.563 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.280 0.720 35 H 0.148 0.852 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 7.524 0.445 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.391 6.391 5 C -0.005 4.005 6 N -0.142 5.142 7 C -0.491 4.491 8 H 0.108 0.892 9 C -0.151 4.151 10 N -0.481 5.481 11 Si 0.728 3.272 12 H -0.177 1.177 13 H -0.194 1.194 14 H -0.197 1.197 15 C 0.351 3.649 16 O -0.461 6.461 17 C -0.079 4.079 18 C -0.176 4.176 19 C -0.173 4.173 20 C -0.065 4.065 21 C -0.018 4.018 22 N -0.150 5.150 23 N -0.048 5.048 24 N -0.078 5.078 25 H 0.327 0.673 26 N -0.144 5.144 27 N -0.092 5.092 28 H 0.291 0.709 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.166 0.834 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.497 7.543 0.002 7.559 hybrid contribution -0.136 0.751 -1.062 1.308 sum -0.633 8.294 -1.060 8.385 Atomic orbital electron populations 1.23091 0.78095 1.02626 1.01984 1.86548 1.22202 1.34811 1.84921 1.25298 0.93564 0.80871 0.71539 1.90585 1.67046 1.36408 1.45086 1.21185 0.84225 0.87771 1.07349 1.42740 1.57532 1.08874 1.05077 1.19361 1.30560 1.06903 0.92322 0.89163 1.25735 0.93508 0.95953 0.99915 1.69608 1.28281 1.16077 1.34174 0.86173 0.79548 0.80579 0.80939 1.17669 1.19448 1.19677 1.17358 0.78737 0.84678 0.84101 1.90713 1.57477 1.65979 1.31950 1.20625 1.09024 0.92228 0.86020 1.21082 1.06645 0.92160 0.97739 1.20904 1.07192 0.98244 0.90954 1.17056 1.15010 0.83405 0.91045 1.22599 0.99768 0.90881 0.88565 1.76261 1.17771 1.10664 1.10284 1.78850 1.14003 0.97316 1.14623 1.47692 1.44517 1.14707 1.00905 0.67286 1.74981 1.21777 1.04555 1.13114 1.43802 1.47967 1.06072 1.11362 0.70947 0.92493 0.88900 0.92524 0.83575 0.87705 0.90908 0.83404 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.95 10.56 -39.24 -0.41 -7.37 16 3 C 0.45 9.90 8.01 36.01 0.29 10.19 16 4 O -0.51 -12.45 16.13 -18.75 -0.30 -12.75 16 5 C 0.12 2.74 5.69 -5.19 -0.03 2.71 16 6 N -0.42 -10.40 1.95 -117.66 -0.23 -10.63 16 7 C -0.36 -8.82 6.46 -15.03 -0.10 -8.92 16 8 H 0.09 2.21 6.08 -52.49 -0.32 1.89 16 9 C 0.06 1.40 5.36 -17.45 -0.09 1.30 16 10 N -0.85 -20.39 11.28 55.50 0.63 -19.76 16 11 Si 0.90 18.61 29.48 -169.99 -5.01 13.60 16 12 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.56 13.86 7.60 -12.96 -0.10 13.76 16 16 O -0.58 -14.99 16.39 5.13 0.08 -14.90 16 17 C 0.04 0.94 6.76 -81.95 -0.55 0.38 16 18 C -0.15 -2.88 10.61 -39.20 -0.42 -3.29 16 19 C -0.14 -2.47 10.78 -39.33 -0.42 -2.89 16 20 C 0.06 1.03 7.12 -82.01 -0.58 0.44 16 21 C 0.26 4.48 8.21 -156.23 -1.28 3.19 16 22 N -0.28 -4.91 12.54 32.08 0.40 -4.50 16 23 N -0.05 -0.75 13.46 60.35 0.81 0.06 16 24 N -0.23 -2.52 7.89 60.35 0.48 -2.05 16 25 H 0.47 2.47 8.96 -340.33 -3.05 -0.58 16 26 N -0.29 -4.07 12.39 32.10 0.40 -3.67 16 27 N -0.49 -10.19 5.39 -5.79 -0.03 -10.22 16 28 H 0.44 9.50 5.04 -40.82 -0.21 9.30 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.82 8.13 -51.92 -0.42 0.40 16 32 H 0.15 3.39 5.79 -51.93 -0.30 3.09 16 33 H 0.11 2.33 7.28 -51.93 -0.38 1.95 16 34 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 35 H 0.15 2.59 8.06 -52.48 -0.42 2.17 16 36 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -31.16 327.96 -5.98 -37.14 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.50 Total: 11.64 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: -2.23 Total: 18.48 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 2.45 Total: -50.77 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.63 Total: -35.03 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.01 Total: 13.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.16 -5.98 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826138344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.311 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds