Wall clock time and date at job start Fri Apr 10 2020 18:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 N 1.35733 * 126.29158 * 322.62362 * 3 2 1 5 5 C 1.30973 * 109.34512 * 180.02562 * 4 3 2 6 6 N 1.38215 * 125.31553 * 179.97438 * 5 4 3 7 7 N 1.36233 * 109.37252 * 359.97438 * 5 4 3 8 8 C 1.46499 * 126.25998 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 90.02772 * 8 7 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 S 1.81002 * 109.47152 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00092 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00251 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00450 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99698 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46777 * 90.00197 * 16 14 12 18 18 H 1.48501 * 109.46807 * 210.00417 * 16 14 12 19 19 H 1.48504 * 109.46961 * 330.00465 * 16 14 12 20 20 C 1.37586 * 107.47381 * 0.26227 * 7 5 4 21 21 C 1.47678 * 126.80665 * 179.71269 * 20 7 5 22 22 N 1.34284 * 126.71600 * 0.02719 * 21 20 7 23 23 N 1.28980 * 107.24299 * 179.97438 * 22 21 20 24 24 N 1.28710 * 109.01858 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.29955 * 179.97438 * 24 23 22 26 26 N 1.28868 * 109.39106 * 359.76486 * 24 23 22 27 27 H 0.97001 * 120.00117 * 180.02562 * 6 5 4 28 28 H 0.97006 * 119.99891 * 0.02562 * 6 5 4 29 29 H 1.09002 * 109.47391 * 330.02441 * 8 7 5 30 30 H 1.09001 * 109.46813 * 210.02498 * 8 7 5 31 31 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 33 33 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 34 34 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 35 35 H 0.96996 * 120.00276 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3718 -0.8684 0.6641 5 6 4.6245 -0.5641 0.4328 6 7 5.7179 -1.2355 0.9469 7 7 4.6817 0.5174 -0.3936 8 6 5.8983 1.1661 -0.8888 9 6 6.3219 0.5165 -2.2077 10 6 7.5928 1.1936 -2.7246 11 16 8.0944 0.4247 -4.2845 12 6 9.5376 1.3703 -4.6417 13 1 9.8516 2.1523 -3.9662 14 6 10.2704 1.1108 -5.7916 15 7 11.3488 1.8168 -6.0581 16 14 9.7269 -0.2414 -6.9602 17 1 8.8025 0.3239 -7.9756 18 1 10.9159 -0.8166 -7.6389 19 1 9.0301 -1.3065 -6.1950 20 6 3.3879 0.8922 -0.6737 21 6 2.9579 2.0195 -1.5253 22 7 3.7540 2.8807 -2.1794 23 7 2.9886 3.7094 -2.8047 24 7 1.7603 3.4042 -2.5709 25 1 0.9888 3.8742 -2.9243 26 7 1.7151 2.3742 -1.7977 27 1 6.6155 -0.9426 0.7244 28 1 5.5876 -1.9996 1.5302 29 1 6.6959 1.0515 -0.1547 30 1 5.7042 2.2262 -1.0518 31 1 6.5160 -0.5436 -2.0448 32 1 5.5244 0.6312 -2.9418 33 1 7.3992 2.2538 -2.8876 34 1 8.3902 1.0786 -1.9904 35 1 11.8611 1.6353 -6.8615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:13 Heat of formation + Delta-G solvation = 214.449369 kcal Electronic energy + Delta-G solvation = -23261.119954 eV Core-core repulsion = 19652.893907 eV Total energy + Delta-G solvation = -3608.226046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.70223 -42.37533 -36.78846 -35.72692 -35.09064 -34.40915 -33.42169 -32.49616 -32.18317 -29.06563 -26.82476 -25.69819 -25.27715 -24.51273 -22.52888 -22.07769 -20.83713 -19.27990 -19.14160 -17.59522 -17.41319 -17.20951 -16.37482 -16.09564 -15.96605 -15.13574 -15.00987 -14.98791 -14.35731 -14.09959 -13.57735 -13.22268 -12.92556 -12.86636 -12.72373 -12.59871 -12.48280 -11.93679 -11.83979 -11.55082 -11.40618 -11.23335 -11.11927 -10.82002 -10.68424 -10.50032 -10.44403 -9.97269 -9.73896 -9.06056 -8.65091 -7.93055 -7.02015 -6.33672 -4.06911 0.43875 0.97513 1.65161 2.13617 2.14592 2.32166 2.50265 2.92183 3.05896 3.26147 3.33508 3.40329 3.50137 3.51430 3.81629 3.90275 4.26140 4.45008 4.67787 4.73768 4.96333 5.00229 5.05294 5.10904 5.23892 5.37479 5.55148 5.59687 5.82900 5.97400 6.06847 6.11500 6.24143 6.43476 6.82616 7.08304 7.39400 7.73649 7.86843 7.89954 8.38975 9.12081 10.75709 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003360 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.157730 B = 8330.652428 C = 9379.116062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.305 3.695 3 C 0.140 3.860 4 N -0.503 5.503 5 C 0.523 3.477 6 N -0.826 5.826 7 N -0.453 5.453 8 C 0.101 3.899 9 C -0.113 4.113 10 C -0.082 4.082 11 S -0.209 6.209 12 C -0.503 4.503 13 H 0.089 0.911 14 C 0.093 3.907 15 N -0.880 5.880 16 Si 0.860 3.140 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.238 1.238 20 C 0.095 3.905 21 C 0.246 3.754 22 N -0.260 5.260 23 N -0.036 5.036 24 N -0.222 5.222 25 H 0.478 0.522 26 N -0.280 5.280 27 H 0.414 0.586 28 H 0.426 0.574 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -0.566 13.120 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.012 4.012 3 C 0.005 3.995 4 N -0.232 5.232 5 C 0.166 3.834 6 N -0.383 5.383 7 N -0.142 5.142 8 C -0.022 4.022 9 C -0.152 4.152 10 C -0.231 4.231 11 S 0.019 5.981 12 C -0.650 4.650 13 H 0.107 0.893 14 C -0.116 4.116 15 N -0.517 5.517 16 Si 0.685 3.315 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.162 1.162 20 C -0.029 4.029 21 C -0.034 4.034 22 N -0.134 5.134 23 N -0.031 5.031 24 N -0.069 5.069 25 H 0.333 0.667 26 N -0.133 5.133 27 H 0.246 0.754 28 H 0.259 0.741 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.184 -1.398 12.422 21.250 hybrid contribution 1.254 0.935 -0.411 1.617 sum -15.930 -0.463 12.011 19.956 Atomic orbital electron populations 1.81201 1.10952 1.07412 1.07945 1.23630 0.90188 0.93707 0.93701 1.15479 0.86109 0.95913 1.01982 1.70832 0.97253 1.27116 1.27960 1.19069 0.88527 0.85426 0.90378 1.41004 1.03695 1.36597 1.57028 1.45075 1.06005 1.24874 1.38295 1.22346 0.82988 0.99599 0.97254 1.21673 0.98401 1.00141 0.94988 1.22933 0.97569 1.02497 1.00058 1.84241 1.36416 1.51084 1.26378 1.22098 1.09057 1.21653 1.12230 0.89260 1.24776 0.93928 0.95983 0.96864 1.69926 1.15852 1.39390 1.26520 0.86700 0.79232 0.83373 0.82208 1.19367 1.20046 1.16229 1.16727 0.83653 0.97382 1.05107 1.21947 0.85479 0.96731 0.99290 1.76271 1.25095 1.02969 1.09066 1.78969 0.88482 1.18999 1.16617 1.47742 1.09514 1.18976 1.30661 0.66722 1.75058 1.22352 1.03971 1.11904 0.75425 0.74120 0.88518 0.86802 0.90835 0.90443 0.90577 0.91066 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.61 18.54 41.84 0.78 -4.84 16 2 C 0.30 4.01 14.97 -22.47 -0.34 3.67 16 3 C 0.14 1.75 6.95 -84.08 -0.58 1.16 16 4 N -0.50 -5.98 11.33 -11.11 -0.13 -6.11 16 5 C 0.52 5.17 8.97 -320.01 -2.87 2.30 16 6 N -0.83 -5.07 9.05 30.15 0.27 -4.79 16 7 N -0.45 -4.74 2.80 -112.99 -0.32 -5.06 16 8 C 0.10 1.00 5.57 -4.04 -0.02 0.98 16 9 C -0.11 -1.47 5.54 -26.73 -0.15 -1.61 16 10 C -0.08 -1.37 5.67 37.16 0.21 -1.16 16 11 S -0.21 -4.78 19.41 -107.50 -2.09 -6.87 16 12 C -0.50 -13.94 10.04 30.94 0.31 -13.63 16 13 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 14 C 0.09 2.64 5.50 -17.43 -0.10 2.54 16 15 N -0.88 -26.02 13.97 55.49 0.78 -25.24 16 16 Si 0.86 20.97 27.74 -169.99 -4.72 16.26 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 20 C 0.09 1.13 6.99 -81.30 -0.57 0.56 16 21 C 0.25 2.99 8.02 -156.20 -1.25 1.74 16 22 N -0.26 -3.31 10.76 32.06 0.34 -2.96 16 23 N -0.04 -0.40 13.46 60.35 0.81 0.42 16 24 N -0.22 -1.85 7.89 60.35 0.48 -1.38 16 25 H 0.48 1.67 8.96 -340.32 -3.05 -1.38 16 26 N -0.28 -3.07 11.57 32.07 0.37 -2.70 16 27 H 0.41 1.87 8.00 -40.82 -0.33 1.54 16 28 H 0.43 1.90 8.95 -40.82 -0.37 1.54 16 29 H 0.10 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.11 1.21 6.59 -51.93 -0.34 0.87 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 34 H 0.07 1.13 8.14 -51.91 -0.42 0.71 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -34.74 334.57 -9.47 -44.21 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.74 Total: -2.52 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -5.36 Total: -3.46 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 3.39 Total: -52.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.72 Total: 16.26 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -2.09 Total: -6.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.74 -9.47 -44.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.661 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds