Wall clock time and date at job start Fri Apr 10 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47228 * 275.00161 * 3 2 1 5 5 H 1.48497 * 109.47283 * 35.00096 * 3 2 1 6 6 H 1.48503 * 109.47160 * 155.00037 * 3 2 1 7 7 C 1.37876 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00284 * 184.92635 * 7 2 1 9 9 C 1.50704 * 119.99975 * 4.92111 * 7 2 1 10 10 O 1.42901 * 110.87478 * 298.60108 * 9 7 2 11 11 C 1.55143 * 110.99114 * 62.48648 * 9 7 2 12 12 C 1.54316 * 103.01850 * 153.74549 * 11 9 7 13 13 N 1.47449 * 107.23439 * 337.71564 * 12 11 9 14 14 C 1.39093 * 110.99943 * 236.74469 * 13 12 11 15 15 C 1.36561 * 120.69735 * 60.12650 * 14 13 12 16 16 C 1.39663 * 121.75367 * 179.97438 * 15 14 13 17 17 C 1.35581 * 122.71789 * 0.02562 * 16 15 14 18 18 N 1.48073 * 119.95267 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00085 * 0.02562 * 18 17 16 20 20 O 1.21803 * 120.00171 * 180.02562 * 18 17 16 21 21 C 1.40668 * 120.10111 * 359.97438 * 17 16 15 22 22 N 1.31069 * 138.75584 * 179.97438 * 21 17 16 23 23 O 1.21501 * 109.05841 * 180.02562 * 22 21 17 24 24 N 1.21514 * 116.27442 * 359.97438 * 23 22 21 25 25 C 1.30639 * 109.09962 * 359.74107 * 24 23 22 26 26 C 1.47845 * 108.56680 * 359.01213 * 13 12 11 27 27 H 0.97001 * 120.00239 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00526 * 56.15665 * 10 9 7 29 29 H 1.08999 * 110.70039 * 35.36159 * 11 9 7 30 30 H 1.09002 * 110.70503 * 272.12466 * 11 9 7 31 31 H 1.09004 * 109.89042 * 218.31374 * 12 11 9 32 32 H 1.09000 * 109.89292 * 97.12119 * 12 11 9 33 33 H 1.08001 * 119.12438 * 359.95259 * 15 14 13 34 34 H 1.08005 * 118.63986 * 180.02562 * 16 15 14 35 35 H 1.08992 * 110.37582 * 142.92411 * 26 13 12 36 36 H 1.09003 * 110.37399 * 265.26850 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0798 9 6 1.2551 -2.4967 -0.1131 10 8 0.3623 -2.6675 0.9896 11 6 0.4958 -2.5862 -1.4630 12 6 0.3935 -4.1070 -1.7041 13 7 1.4642 -4.7470 -0.9179 14 6 2.2908 -5.5134 -1.7328 15 6 2.9814 -4.9398 -2.7618 16 6 3.8177 -5.6881 -3.5932 17 6 4.0005 -7.0227 -3.4390 18 7 4.9018 -7.7563 -4.3567 19 8 5.4786 -7.1608 -5.2489 20 8 5.0663 -8.9553 -4.2194 21 6 3.3353 -7.7115 -2.4086 22 7 3.2406 -8.9320 -1.9403 23 8 2.4824 -8.9349 -0.9909 24 7 1.9957 -7.8635 -0.6879 25 6 2.4436 -6.9451 -1.5018 26 6 2.2340 -3.6921 -0.2248 27 1 -0.4850 0.8400 0.0004 28 1 -0.2696 -1.9439 1.0998 29 1 1.0666 -2.1074 -2.2586 30 1 -0.4959 -2.1420 -1.3776 31 1 0.5306 -4.3246 -2.7634 32 1 -0.5787 -4.4707 -1.3714 33 1 2.8778 -3.8792 -2.9377 34 1 4.3404 -5.1828 -4.3919 35 1 2.5341 -4.0308 0.7668 36 1 3.1087 -3.4127 -0.8121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:15 Heat of formation + Delta-G solvation = 109.512544 kcal Electronic energy + Delta-G solvation = -26924.073818 eV Core-core repulsion = 22803.958996 eV Total energy + Delta-G solvation = -4120.114822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.06670 -42.29928 -40.30078 -38.03497 -36.71561 -35.52917 -34.78739 -33.69864 -32.36085 -31.75534 -29.38303 -28.61291 -26.57790 -25.67403 -25.18138 -24.79890 -21.93681 -20.93188 -20.08740 -19.59297 -19.29406 -18.96526 -18.54023 -18.02316 -17.67944 -17.55080 -16.33335 -15.74981 -15.15131 -14.93701 -14.10925 -14.05328 -13.65938 -13.43804 -13.27526 -13.05033 -12.77059 -12.33681 -12.17110 -12.00671 -11.91158 -11.71166 -11.58219 -11.45350 -11.30963 -11.26676 -11.05875 -10.76052 -10.64223 -10.52018 -10.30678 -9.61177 -9.09535 -8.84189 -8.54143 -8.38160 -6.47831 -4.57464 -0.99367 0.52224 0.59366 1.04565 1.46049 2.52625 2.58449 2.80216 3.05490 3.11579 3.15602 3.17998 3.85895 4.00625 4.09828 4.11447 4.39331 4.53948 4.79422 4.84586 5.00262 5.19809 5.35423 5.46693 5.50729 5.60225 5.67684 5.96345 6.12419 6.17750 6.39318 6.60025 6.83338 7.07931 7.09389 7.16873 7.47201 7.54654 7.79404 8.07678 8.45451 9.12531 9.29790 10.59436 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.003614 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.728681 B = 7746.821481 C = 8702.806028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.257 3.743 10 O -0.579 6.579 11 C -0.147 4.147 12 C 0.047 3.953 13 N -0.505 5.505 14 C 0.257 3.743 15 C -0.176 4.176 16 C 0.051 3.949 17 C -0.037 4.037 18 N 0.035 4.965 19 O -0.165 6.165 20 O -0.145 6.145 21 C 0.046 3.954 22 N -0.318 5.318 23 O 0.384 5.616 24 N -0.294 5.294 25 C 0.029 3.971 26 C 0.061 3.939 27 H 0.271 0.729 28 H 0.385 0.615 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.083 0.917 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -8.181 -6.391 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.217 3.783 10 O -0.389 6.389 11 C -0.186 4.186 12 C -0.077 4.077 13 N -0.227 5.227 14 C 0.158 3.842 15 C -0.201 4.201 16 C 0.028 3.972 17 C -0.123 4.123 18 N 0.554 4.446 19 O -0.377 6.377 20 O -0.363 6.363 21 C -0.110 4.110 22 N -0.039 5.039 23 O 0.142 5.858 24 N -0.009 5.009 25 C -0.129 4.129 26 C -0.063 4.063 27 H 0.081 0.919 28 H 0.236 0.764 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.568 -9.522 -4.901 11.013 hybrid contribution 0.830 2.433 -1.349 2.903 sum 3.397 -7.090 -6.251 10.044 Atomic orbital electron populations 1.69627 1.06043 1.27975 1.49419 1.24989 0.94987 0.99620 0.93216 0.86409 0.79993 0.82445 0.78229 1.20407 1.20869 1.19617 1.21474 0.94008 0.90261 1.52560 0.91714 1.19488 0.85767 0.89942 0.83150 1.86125 1.51028 1.50503 1.51217 1.23368 1.03604 0.90811 1.00865 1.23124 0.93793 0.96600 0.94178 1.61160 1.10707 1.24918 1.25914 1.19180 0.88695 0.87281 0.89081 1.21670 0.99094 1.02777 0.96509 1.20928 0.90386 0.89977 0.95899 1.19342 1.04048 0.92247 0.96681 1.43327 0.99727 1.01300 1.00282 1.94535 1.47807 1.69944 1.25424 1.94612 1.67726 0.96576 1.77383 1.21766 1.00829 0.89605 0.98847 1.75548 1.09267 1.18208 1.00897 1.85510 1.39055 1.27648 1.33548 1.75266 1.14936 0.92114 1.18596 1.23777 0.98543 0.96689 0.93850 1.23415 0.95550 0.89160 0.98135 0.91927 0.76401 0.91779 0.89563 0.93287 0.89999 0.80987 0.80957 0.89840 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.35 10.76 55.43 0.60 -20.76 16 2 C 0.08 1.78 5.26 -17.82 -0.09 1.68 16 3 Si 0.90 18.65 29.54 -169.99 -5.02 13.62 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -12.75 8.26 -34.44 -0.28 -13.03 16 8 H 0.06 1.50 7.79 -52.49 -0.41 1.09 16 9 C 0.26 5.48 0.89 -89.63 -0.08 5.41 16 10 O -0.58 -13.65 13.19 -35.23 -0.46 -14.11 16 11 C -0.15 -2.78 5.49 -24.91 -0.14 -2.91 16 12 C 0.05 0.75 6.52 -2.83 -0.02 0.73 16 13 N -0.50 -8.30 5.20 -166.48 -0.86 -9.16 16 14 C 0.26 3.57 4.80 -82.14 -0.39 3.18 16 15 C -0.18 -1.94 7.74 -39.66 -0.31 -2.25 16 16 C 0.05 0.51 9.40 -40.00 -0.38 0.14 16 17 C -0.04 -0.47 6.85 -79.95 -0.55 -1.01 16 18 N 0.04 0.50 4.46 33.96 0.15 0.65 16 19 O -0.17 -2.26 18.36 -29.46 -0.54 -2.80 16 20 O -0.15 -2.27 18.47 -29.46 -0.54 -2.81 16 21 C 0.05 0.65 7.19 -83.05 -0.60 0.05 16 22 N -0.32 -4.49 11.95 31.89 0.38 -4.10 16 23 O 0.38 5.06 11.67 26.92 0.31 5.37 16 24 N -0.29 -4.28 12.27 32.74 0.40 -3.88 16 25 C 0.03 0.42 7.92 -81.12 -0.64 -0.23 16 26 C 0.06 1.11 5.71 -2.30 -0.01 1.10 16 27 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 28 H 0.38 9.25 7.18 45.56 0.33 9.58 16 29 H 0.06 1.17 8.03 -51.93 -0.42 0.76 16 30 H 0.09 1.78 7.70 -51.93 -0.40 1.38 16 31 H 0.05 0.65 7.03 -51.93 -0.36 0.29 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.17 1.69 7.62 -52.49 -0.40 1.29 16 34 H 0.17 1.23 7.47 -52.48 -0.39 0.84 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.02 6.66 -51.93 -0.35 0.68 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -25.81 317.26 -6.68 -32.49 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.38 Total: 7.85 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.49 Total: -7.15 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.25 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.24 Total: -14.36 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.81 -6.68 -32.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.006 kcal (2) G-P(sol) polarization free energy of solvation -25.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds