Wall clock time and date at job start Fri Apr 10 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47228 * 275.00161 * 3 2 1 5 5 H 1.48497 * 109.47283 * 35.00096 * 3 2 1 6 6 H 1.48503 * 109.47160 * 155.00037 * 3 2 1 7 7 C 1.37876 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00284 * 184.92635 * 7 2 1 9 9 C 1.50704 * 119.99975 * 4.92111 * 7 2 1 10 10 O 1.42901 * 110.87478 * 298.60108 * 9 7 2 11 11 C 1.55143 * 110.99114 * 62.48648 * 9 7 2 12 12 C 1.54316 * 103.01850 * 153.74549 * 11 9 7 13 13 N 1.47449 * 107.23439 * 337.71564 * 12 11 9 14 14 C 1.39093 * 110.99943 * 236.74469 * 13 12 11 15 15 C 1.36561 * 120.69735 * 60.12650 * 14 13 12 16 16 C 1.39663 * 121.75367 * 179.97438 * 15 14 13 17 17 C 1.35581 * 122.71789 * 0.02562 * 16 15 14 18 18 N 1.48073 * 119.95267 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00085 * 0.02562 * 18 17 16 20 20 O 1.21803 * 120.00171 * 180.02562 * 18 17 16 21 21 C 1.40668 * 120.10111 * 359.97438 * 17 16 15 22 22 N 1.31069 * 138.75584 * 179.97438 * 21 17 16 23 23 O 1.21501 * 109.05841 * 180.02562 * 22 21 17 24 24 N 1.21514 * 116.27442 * 359.97438 * 23 22 21 25 25 C 1.30639 * 109.09962 * 359.74107 * 24 23 22 26 26 C 1.47845 * 108.56680 * 359.01213 * 13 12 11 27 27 H 0.97001 * 120.00239 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00526 * 56.15665 * 10 9 7 29 29 H 1.08999 * 110.70039 * 35.36159 * 11 9 7 30 30 H 1.09002 * 110.70503 * 272.12466 * 11 9 7 31 31 H 1.09004 * 109.89042 * 218.31374 * 12 11 9 32 32 H 1.09000 * 109.89292 * 97.12119 * 12 11 9 33 33 H 1.08001 * 119.12438 * 359.95259 * 15 14 13 34 34 H 1.08005 * 118.63986 * 180.02562 * 16 15 14 35 35 H 1.08992 * 110.37582 * 142.92411 * 26 13 12 36 36 H 1.09003 * 110.37399 * 265.26850 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0798 9 6 1.2551 -2.4967 -0.1131 10 8 0.3623 -2.6675 0.9896 11 6 0.4958 -2.5862 -1.4630 12 6 0.3935 -4.1070 -1.7041 13 7 1.4642 -4.7470 -0.9179 14 6 2.2908 -5.5134 -1.7328 15 6 2.9814 -4.9398 -2.7618 16 6 3.8177 -5.6881 -3.5932 17 6 4.0005 -7.0227 -3.4390 18 7 4.9018 -7.7563 -4.3567 19 8 5.4786 -7.1608 -5.2489 20 8 5.0663 -8.9553 -4.2194 21 6 3.3353 -7.7115 -2.4086 22 7 3.2406 -8.9320 -1.9403 23 8 2.4824 -8.9349 -0.9909 24 7 1.9957 -7.8635 -0.6879 25 6 2.4436 -6.9451 -1.5018 26 6 2.2340 -3.6921 -0.2248 27 1 -0.4850 0.8400 0.0004 28 1 -0.2696 -1.9439 1.0998 29 1 1.0666 -2.1074 -2.2586 30 1 -0.4959 -2.1420 -1.3776 31 1 0.5306 -4.3246 -2.7634 32 1 -0.5787 -4.4707 -1.3714 33 1 2.8778 -3.8792 -2.9377 34 1 4.3404 -5.1828 -4.3919 35 1 2.5341 -4.0308 0.7668 36 1 3.1087 -3.4127 -0.8121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:15 Heat of formation + Delta-G solvation = 92.560932 kcal Electronic energy + Delta-G solvation = -26924.808895 eV Core-core repulsion = 22803.958996 eV Total energy + Delta-G solvation = -4120.849899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.12225 -43.36051 -41.49165 -39.26733 -37.79278 -36.93144 -35.99550 -34.71078 -34.15644 -33.00986 -30.65738 -30.09137 -27.80737 -26.74525 -26.38890 -26.14677 -23.17091 -22.05229 -21.64716 -20.71011 -20.37041 -20.02791 -19.59450 -19.26761 -18.93698 -18.73786 -17.65786 -17.00177 -16.88988 -16.25693 -15.64052 -15.15056 -14.82419 -14.54283 -14.39280 -14.20673 -14.05426 -13.77737 -13.56438 -13.23868 -13.15563 -13.14549 -12.93549 -12.81001 -12.62877 -12.43539 -12.37093 -12.32258 -12.26569 -11.93437 -11.48056 -11.22707 -10.60436 -10.17561 -10.11150 -9.76939 -8.24119 -6.39331 -1.99789 -0.55375 -0.39003 0.01879 0.40400 1.42623 1.48392 1.54136 1.55507 1.59405 1.75170 2.05454 2.38906 2.73059 3.00935 3.03394 3.20268 3.38961 3.58985 3.73965 3.89323 3.96085 4.13222 4.15162 4.26461 4.47007 4.59652 4.63514 4.78187 4.93431 5.06278 5.12291 5.39668 5.48883 5.57770 5.78951 5.94729 6.09259 6.36720 6.67019 7.04107 7.33084 7.47344 8.81415 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.003614 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.728681 B = 7746.821481 C = 8702.806028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.038 3.962 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.062 0.938 9 C 0.237 3.763 10 O -0.595 6.595 11 C -0.136 4.136 12 C 0.056 3.944 13 N -0.516 5.516 14 C 0.231 3.769 15 C -0.146 4.146 16 C 0.081 3.919 17 C -0.047 4.047 18 N 0.036 4.964 19 O -0.132 6.132 20 O -0.200 6.200 21 C 0.042 3.958 22 N -0.332 5.332 23 O 0.392 5.608 24 N -0.313 5.313 25 C 0.024 3.976 26 C 0.071 3.929 27 H 0.270 0.730 28 H 0.378 0.622 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.196 0.804 34 H 0.214 0.786 35 H 0.064 0.936 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -7.214 -8.375 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.080 0.920 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.175 4.175 12 C -0.068 4.068 13 N -0.237 5.237 14 C 0.132 3.868 15 C -0.169 4.169 16 C 0.058 3.942 17 C -0.134 4.134 18 N 0.552 4.448 19 O -0.355 6.355 20 O -0.404 6.404 21 C -0.115 4.115 22 N -0.053 5.053 23 O 0.150 5.850 24 N -0.028 5.028 25 C -0.133 4.133 26 C -0.053 4.053 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.213 0.787 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.777 -8.689 -6.842 11.687 hybrid contribution 0.491 2.221 -0.777 2.404 sum 4.268 -6.468 -7.619 10.867 Atomic orbital electron populations 1.69716 1.06881 1.28332 1.49936 1.25586 0.95598 1.02015 0.93159 0.85584 0.78674 0.79357 0.78234 1.19665 1.21511 1.19747 1.21755 0.94105 0.91451 1.52470 0.91950 1.19801 0.86285 0.90668 0.83609 1.86124 1.51289 1.50224 1.52700 1.23141 1.01863 0.92894 0.99623 1.23010 0.93497 0.94255 0.96007 1.60852 1.11255 1.24493 1.27148 1.19174 0.90362 0.86756 0.90498 1.21906 0.96939 1.03602 0.94500 1.21324 0.88683 0.88562 0.95620 1.19526 1.04339 0.92992 0.96541 1.43474 0.99724 1.01206 1.00348 1.94498 1.46631 1.69566 1.24769 1.94642 1.69739 0.97344 1.78709 1.21954 1.00958 0.89407 0.99199 1.75520 1.09663 1.18820 1.01262 1.85496 1.38880 1.27238 1.33351 1.75228 1.15690 0.92612 1.19305 1.23906 0.98588 0.96996 0.93819 1.23215 0.95514 0.88496 0.98103 0.92054 0.77246 0.90975 0.92005 0.89885 0.90998 0.78708 0.76929 0.91733 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.59 10.76 21.45 0.23 -43.36 16 2 C 0.04 1.76 5.26 84.65 0.44 2.21 16 3 Si 0.96 37.52 29.54 68.60 2.03 39.55 16 4 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -25.76 8.26 25.60 0.21 -25.55 16 8 H 0.06 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.24 9.96 0.89 -10.15 -0.01 9.95 16 10 O -0.59 -28.50 13.19 -148.98 -1.96 -30.46 16 11 C -0.14 -4.95 5.49 31.78 0.17 -4.78 16 12 C 0.06 1.69 6.52 86.64 0.56 2.25 16 13 N -0.52 -16.05 5.20 -680.63 -3.54 -19.59 16 14 C 0.23 5.81 4.80 39.56 0.19 6.00 16 15 C -0.15 -2.53 7.74 22.22 0.17 -2.36 16 16 C 0.08 1.22 9.40 22.00 0.21 1.43 16 17 C -0.05 -1.06 6.85 36.34 0.25 -0.81 16 18 N 0.04 0.94 4.46 -46.47 -0.21 0.74 16 19 O -0.13 -3.13 18.36 18.89 0.35 -2.78 16 20 O -0.20 -6.15 18.47 18.88 0.35 -5.81 16 21 C 0.04 1.10 7.19 42.59 0.31 1.40 16 22 N -0.33 -9.26 11.95 -57.38 -0.69 -9.95 16 23 O 0.39 10.35 11.67 139.25 1.63 11.98 16 24 N -0.31 -9.02 12.27 -55.25 -0.68 -9.70 16 25 C 0.02 0.66 7.92 44.02 0.35 1.01 16 26 C 0.07 2.48 5.71 86.77 0.50 2.98 16 27 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 28 H 0.38 18.69 7.18 -74.06 -0.53 18.16 16 29 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 30 H 0.06 2.54 7.70 -2.39 -0.02 2.52 16 31 H 0.08 1.90 7.03 -2.39 -0.02 1.88 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.20 2.67 7.62 -2.91 -0.02 2.64 16 34 H 0.21 1.58 7.47 -2.91 -0.02 1.56 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.52 6.66 -2.39 -0.02 2.50 16 Total: -1.00 -56.59 317.26 1.50 -55.09 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.64 Total: 20.57 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.35 Total: -6.28 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -4.88 Total: -81.86 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.36 Total: -27.07 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -56.59 1.50 -55.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.648 kcal (2) G-P(sol) polarization free energy of solvation -56.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds