Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47243 * 240.00597 * 3 2 1 5 5 H 1.48506 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46984 * 120.00049 * 3 2 1 7 7 C 1.37877 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99889 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.87661 * 62.39066 * 9 7 2 11 11 C 1.55143 * 110.98998 * 298.53970 * 9 7 2 12 12 C 1.54314 * 103.02009 * 206.22293 * 11 9 7 13 13 N 1.47445 * 107.23300 * 22.28347 * 12 11 9 14 14 C 1.39094 * 110.99648 * 123.26086 * 13 12 11 15 15 C 1.36570 * 120.69552 * 299.75472 * 14 13 12 16 16 C 1.39661 * 121.75201 * 179.68594 * 15 14 13 17 17 C 1.35589 * 122.71396 * 0.22716 * 16 15 14 18 18 N 1.48074 * 119.94600 * 179.97438 * 17 16 15 19 19 O 1.21805 * 120.00153 * 0.02562 * 18 17 16 20 20 O 1.21807 * 120.00192 * 180.02562 * 18 17 16 21 21 C 1.40661 * 120.10530 * 359.97438 * 17 16 15 22 22 N 1.31076 * 138.75649 * 180.02562 * 21 17 16 23 23 O 1.21499 * 109.05551 * 179.97438 * 22 21 17 24 24 N 1.21508 * 116.27548 * 0.02562 * 23 22 21 25 25 C 1.30634 * 109.10309 * 359.97438 * 24 23 22 26 26 C 1.47846 * 108.56897 * 0.99060 * 13 12 11 27 27 H 0.97003 * 119.99898 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99810 * 297.60520 * 10 9 7 29 29 H 1.09005 * 110.70049 * 87.83596 * 11 9 7 30 30 H 1.09000 * 110.85285 * 324.67861 * 11 9 7 31 31 H 1.08997 * 109.88689 * 262.87707 * 12 11 9 32 32 H 1.08997 * 110.02028 * 141.76755 * 12 11 9 33 33 H 1.08003 * 119.11999 * 359.90727 * 15 14 13 34 34 H 1.08003 * 118.63918 * 180.24903 * 16 15 14 35 35 H 1.09007 * 110.36809 * 94.72829 * 26 13 12 36 36 H 1.08990 * 110.37615 * 217.07267 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4609 -2.6300 -1.1852 11 6 0.3732 -2.6352 1.2703 12 6 0.2522 -4.1634 1.4474 13 7 1.3905 -4.7768 0.7388 14 6 2.1415 -5.5728 1.5972 15 6 2.7376 -5.0364 2.7027 16 6 3.4911 -5.8163 3.5828 17 6 3.6855 -7.1458 3.4011 18 7 4.4965 -7.9139 4.3731 19 8 4.9879 -7.3514 5.3353 20 8 4.6722 -9.1082 4.2106 21 6 3.1181 -7.7965 2.2906 22 7 3.0655 -9.0002 1.7744 23 8 2.3990 -8.9676 0.7591 24 7 1.9440 -7.8845 0.4488 25 6 2.3105 -6.9971 1.3347 26 6 2.2178 -3.6992 0.1555 27 1 -0.4850 0.8401 0.0004 28 1 -0.2247 -1.9542 -1.2771 29 1 -0.6075 -2.1867 1.1116 30 1 0.8664 -2.1852 2.1320 31 1 -0.6855 -4.5135 1.0159 32 1 0.2920 -4.4207 2.5058 33 1 2.6202 -3.9817 2.9036 34 1 3.9370 -5.3407 4.4439 35 1 3.0355 -3.4420 0.8288 36 1 2.6066 -4.0031 -0.8163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = 109.824828 kcal Electronic energy + Delta-G solvation = -26924.956230 eV Core-core repulsion = 22804.854949 eV Total energy + Delta-G solvation = -4120.101280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.06870 -42.29576 -40.30114 -38.03933 -36.71282 -35.53065 -34.78580 -33.69811 -32.39006 -31.74309 -29.36373 -28.61945 -26.56918 -25.67417 -25.17939 -24.79377 -21.93462 -20.92925 -20.10072 -19.59247 -19.29567 -18.96472 -18.53852 -18.02003 -17.67712 -17.52172 -16.33589 -15.75101 -15.12999 -14.94422 -14.15203 -14.04721 -13.65811 -13.43660 -13.27286 -13.04347 -12.75415 -12.36134 -12.18446 -12.01548 -11.91219 -11.71035 -11.54547 -11.44499 -11.30794 -11.26538 -11.04123 -10.75947 -10.64427 -10.52281 -10.28983 -9.59067 -9.09611 -8.85151 -8.54025 -8.38811 -6.45425 -4.55633 -0.99337 0.52258 0.59399 1.04648 1.46059 2.52680 2.58483 2.80218 3.08569 3.11604 3.15433 3.17906 3.85983 4.00622 4.10363 4.12341 4.39437 4.54085 4.80681 4.84989 5.00553 5.20184 5.35640 5.45839 5.51108 5.60144 5.68165 5.96723 6.12471 6.17943 6.39629 6.61004 6.82830 7.06001 7.10818 7.17755 7.47235 7.55474 7.82141 8.07666 8.46733 9.13583 9.23698 10.61532 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003601 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.406028 B = 7773.153182 C = 8702.397322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.257 3.743 10 O -0.577 6.577 11 C -0.145 4.145 12 C 0.046 3.954 13 N -0.505 5.505 14 C 0.257 3.743 15 C -0.176 4.176 16 C 0.051 3.949 17 C -0.037 4.037 18 N 0.035 4.965 19 O -0.165 6.165 20 O -0.145 6.145 21 C 0.046 3.954 22 N -0.318 5.318 23 O 0.384 5.616 24 N -0.294 5.294 25 C 0.029 3.971 26 C 0.061 3.939 27 H 0.270 0.730 28 H 0.381 0.619 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.063 0.937 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -8.503 6.176 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.217 3.783 10 O -0.386 6.386 11 C -0.184 4.184 12 C -0.078 4.078 13 N -0.227 5.227 14 C 0.158 3.842 15 C -0.200 4.200 16 C 0.028 3.972 17 C -0.123 4.123 18 N 0.554 4.446 19 O -0.377 6.377 20 O -0.363 6.363 21 C -0.110 4.110 22 N -0.039 5.039 23 O 0.142 5.858 24 N -0.009 5.009 25 C -0.129 4.129 26 C -0.062 4.062 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.190 0.810 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.076 -9.752 4.555 10.962 hybrid contribution 0.681 2.348 1.456 2.845 sum 2.757 -7.404 6.011 9.927 Atomic orbital electron populations 1.69699 1.05998 1.27985 1.49342 1.24978 0.95007 0.99560 0.93214 0.86488 0.79603 0.82063 0.78936 1.19913 1.20998 1.20025 1.21403 0.93576 0.90219 1.53017 0.91865 1.19489 0.86626 0.90036 0.82182 1.86158 1.51485 1.56882 1.44052 1.23369 1.03679 0.90425 1.00973 1.23148 0.92437 0.96988 0.95258 1.61162 1.08857 1.23050 1.29650 1.19179 0.88314 0.87354 0.89400 1.21676 1.00525 1.02709 0.95114 1.20932 0.88847 0.89679 0.97729 1.19342 1.07615 0.92205 0.93156 1.43333 0.99363 1.01331 1.00617 1.94537 1.50545 1.72201 1.20428 1.94612 1.63921 0.97014 1.80748 1.21764 1.01601 0.89677 0.98003 1.75551 1.11242 1.18656 0.98476 1.85507 1.43208 1.27108 1.29932 1.75261 1.14375 0.91998 1.19297 1.23773 1.00261 0.96825 0.91998 1.23407 0.95042 0.88651 0.99140 0.91980 0.76911 0.89344 0.91753 0.90057 0.93288 0.80973 0.80953 0.91911 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.32 10.75 55.43 0.60 -20.73 16 2 C 0.08 1.80 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -12.75 8.27 -34.44 -0.28 -13.04 16 8 H 0.06 1.47 7.79 -52.49 -0.41 1.06 16 9 C 0.26 5.47 0.87 -89.63 -0.08 5.39 16 10 O -0.58 -13.46 13.16 -35.23 -0.46 -13.93 16 11 C -0.15 -2.73 5.37 -24.91 -0.13 -2.87 16 12 C 0.05 0.73 6.52 -2.84 -0.02 0.71 16 13 N -0.51 -8.28 5.20 -166.49 -0.86 -9.14 16 14 C 0.26 3.57 4.80 -82.14 -0.39 3.18 16 15 C -0.18 -1.94 7.75 -39.65 -0.31 -2.25 16 16 C 0.05 0.52 9.40 -40.00 -0.38 0.14 16 17 C -0.04 -0.47 6.85 -79.95 -0.55 -1.01 16 18 N 0.04 0.50 4.46 33.96 0.15 0.65 16 19 O -0.17 -2.27 18.36 -29.46 -0.54 -2.81 16 20 O -0.15 -2.27 18.47 -29.46 -0.54 -2.82 16 21 C 0.05 0.65 7.19 -83.05 -0.60 0.05 16 22 N -0.32 -4.48 11.95 31.88 0.38 -4.10 16 23 O 0.38 5.06 11.67 26.92 0.31 5.37 16 24 N -0.29 -4.27 12.27 32.74 0.40 -3.87 16 25 C 0.03 0.42 7.92 -81.12 -0.64 -0.23 16 26 C 0.06 1.11 5.71 -2.30 -0.01 1.10 16 27 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 28 H 0.38 8.97 7.56 45.56 0.34 9.31 16 29 H 0.09 1.82 7.53 -51.93 -0.39 1.43 16 30 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.65 7.04 -51.93 -0.37 0.29 16 33 H 0.17 1.70 7.61 -52.48 -0.40 1.31 16 34 H 0.17 1.24 7.47 -52.48 -0.39 0.85 16 35 H 0.06 1.03 6.65 -51.92 -0.35 0.68 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -25.80 317.34 -6.65 -32.45 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.35 Total: 7.56 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.49 Total: -7.13 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.66 Total: -37.20 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.23 Total: -14.18 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.80 -6.65 -32.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.275 kcal (2) G-P(sol) polarization free energy of solvation -25.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds