Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47243 * 240.00597 * 3 2 1 5 5 H 1.48506 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46984 * 120.00049 * 3 2 1 7 7 C 1.37877 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99889 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.87661 * 62.39066 * 9 7 2 11 11 C 1.55143 * 110.98998 * 298.53970 * 9 7 2 12 12 C 1.54314 * 103.02009 * 206.22293 * 11 9 7 13 13 N 1.47445 * 107.23300 * 22.28347 * 12 11 9 14 14 C 1.39094 * 110.99648 * 123.26086 * 13 12 11 15 15 C 1.36570 * 120.69552 * 299.75472 * 14 13 12 16 16 C 1.39661 * 121.75201 * 179.68594 * 15 14 13 17 17 C 1.35589 * 122.71396 * 0.22716 * 16 15 14 18 18 N 1.48074 * 119.94600 * 179.97438 * 17 16 15 19 19 O 1.21805 * 120.00153 * 0.02562 * 18 17 16 20 20 O 1.21807 * 120.00192 * 180.02562 * 18 17 16 21 21 C 1.40661 * 120.10530 * 359.97438 * 17 16 15 22 22 N 1.31076 * 138.75649 * 180.02562 * 21 17 16 23 23 O 1.21499 * 109.05551 * 179.97438 * 22 21 17 24 24 N 1.21508 * 116.27548 * 0.02562 * 23 22 21 25 25 C 1.30634 * 109.10309 * 359.97438 * 24 23 22 26 26 C 1.47846 * 108.56897 * 0.99060 * 13 12 11 27 27 H 0.97003 * 119.99898 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99810 * 297.60520 * 10 9 7 29 29 H 1.09005 * 110.70049 * 87.83596 * 11 9 7 30 30 H 1.09000 * 110.85285 * 324.67861 * 11 9 7 31 31 H 1.08997 * 109.88689 * 262.87707 * 12 11 9 32 32 H 1.08997 * 110.02028 * 141.76755 * 12 11 9 33 33 H 1.08003 * 119.11999 * 359.90727 * 15 14 13 34 34 H 1.08003 * 118.63918 * 180.24903 * 16 15 14 35 35 H 1.09007 * 110.36809 * 94.72829 * 26 13 12 36 36 H 1.08990 * 110.37615 * 217.07267 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4609 -2.6300 -1.1852 11 6 0.3732 -2.6352 1.2703 12 6 0.2522 -4.1634 1.4474 13 7 1.3905 -4.7768 0.7388 14 6 2.1415 -5.5728 1.5972 15 6 2.7376 -5.0364 2.7027 16 6 3.4911 -5.8163 3.5828 17 6 3.6855 -7.1458 3.4011 18 7 4.4965 -7.9139 4.3731 19 8 4.9879 -7.3514 5.3353 20 8 4.6722 -9.1082 4.2106 21 6 3.1181 -7.7965 2.2906 22 7 3.0655 -9.0002 1.7744 23 8 2.3990 -8.9676 0.7591 24 7 1.9440 -7.8845 0.4488 25 6 2.3105 -6.9971 1.3347 26 6 2.2178 -3.6992 0.1555 27 1 -0.4850 0.8401 0.0004 28 1 -0.2247 -1.9542 -1.2771 29 1 -0.6075 -2.1867 1.1116 30 1 0.8664 -2.1852 2.1320 31 1 -0.6855 -4.5135 1.0159 32 1 0.2920 -4.4207 2.5058 33 1 2.6202 -3.9817 2.9036 34 1 3.9370 -5.3407 4.4439 35 1 3.0355 -3.4420 0.8288 36 1 2.6066 -4.0031 -0.8163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = 92.871346 kcal Electronic energy + Delta-G solvation = -26925.691388 eV Core-core repulsion = 22804.854949 eV Total energy + Delta-G solvation = -4120.836438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.12429 -43.35846 -41.49240 -39.27130 -37.79161 -36.92627 -35.99284 -34.71092 -34.18593 -32.99298 -30.63885 -30.09614 -27.79989 -26.74573 -26.38409 -26.14776 -23.16834 -22.05059 -21.65968 -20.70984 -20.37157 -20.02827 -19.59198 -19.24113 -18.92686 -18.73702 -17.66998 -17.00297 -16.86366 -16.26552 -15.67931 -15.14744 -14.82332 -14.54098 -14.39739 -14.20514 -14.04686 -13.78532 -13.57080 -13.23886 -13.15272 -13.11337 -12.92775 -12.81060 -12.64375 -12.43397 -12.37119 -12.31924 -12.26659 -11.91214 -11.48074 -11.19942 -10.61860 -10.18764 -10.10396 -9.76899 -8.22157 -6.37703 -1.99887 -0.55462 -0.39092 0.01815 0.40366 1.44281 1.48447 1.52962 1.54479 1.59343 1.75161 2.05459 2.39383 2.73170 3.00836 3.04893 3.20205 3.38959 3.58916 3.73955 3.88250 3.96251 4.13263 4.16064 4.26769 4.47125 4.60027 4.63557 4.78528 4.94240 5.06185 5.12097 5.38764 5.49284 5.59859 5.79459 5.94690 6.11835 6.36592 6.67884 7.04113 7.34169 7.43336 8.82659 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003601 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.406028 B = 7773.153182 C = 8702.397322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.039 3.961 3 Si 0.953 3.047 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.237 3.763 10 O -0.592 6.592 11 C -0.133 4.133 12 C 0.055 3.945 13 N -0.515 5.515 14 C 0.231 3.769 15 C -0.146 4.146 16 C 0.081 3.919 17 C -0.047 4.047 18 N 0.036 4.964 19 O -0.132 6.132 20 O -0.200 6.200 21 C 0.041 3.959 22 N -0.332 5.332 23 O 0.392 5.608 24 N -0.313 5.313 25 C 0.024 3.976 26 C 0.071 3.929 27 H 0.269 0.731 28 H 0.375 0.625 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.195 0.805 34 H 0.214 0.786 35 H 0.083 0.917 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -7.659 8.203 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.163 4.163 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.598 4.598 8 H 0.079 0.921 9 C 0.197 3.803 10 O -0.400 6.400 11 C -0.172 4.172 12 C -0.069 4.069 13 N -0.237 5.237 14 C 0.132 3.868 15 C -0.170 4.170 16 C 0.058 3.942 17 C -0.134 4.134 18 N 0.552 4.448 19 O -0.355 6.355 20 O -0.404 6.404 21 C -0.115 4.115 22 N -0.053 5.053 23 O 0.151 5.849 24 N -0.028 5.028 25 C -0.133 4.133 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.224 0.776 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.230 0.770 35 H 0.101 0.899 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.065 -9.038 6.536 11.567 hybrid contribution 0.408 2.173 0.876 2.379 sum 3.473 -6.864 7.412 10.682 Atomic orbital electron populations 1.69789 1.06760 1.28258 1.49823 1.25560 0.95633 1.01884 0.93196 0.85691 0.78475 0.79173 0.78744 1.20621 1.21237 1.19099 1.21702 0.93709 0.91470 1.52897 0.92094 1.19780 0.87414 0.90698 0.82411 1.86156 1.51557 1.56652 1.45617 1.23127 1.01796 0.92515 0.99810 1.23031 0.92139 0.94643 0.97080 1.60862 1.09173 1.22605 1.31072 1.19173 0.90189 0.86801 0.90605 1.21903 0.98232 1.03522 0.93307 1.21321 0.86767 0.88196 0.97917 1.19522 1.08109 0.92931 0.92827 1.43480 0.99290 1.01253 1.00737 1.94501 1.49146 1.71825 1.20023 1.94642 1.66161 0.97806 1.81794 1.21951 1.01696 0.89468 0.98410 1.75523 1.11652 1.19257 0.98827 1.85493 1.43039 1.26698 1.29712 1.75223 1.15127 0.92488 1.19977 1.23897 1.00309 0.97129 0.91960 1.23206 0.94919 0.88042 0.99140 0.92183 0.77636 0.91707 0.91194 0.90936 0.89977 0.78770 0.76957 0.89862 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.37 10.75 21.45 0.23 -43.14 16 2 C 0.04 1.82 5.29 84.65 0.45 2.26 16 3 Si 0.95 37.72 29.54 68.60 2.03 39.75 16 4 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -25.81 8.27 25.60 0.21 -25.60 16 8 H 0.06 2.76 7.79 -2.91 -0.02 2.74 16 9 C 0.24 9.94 0.87 -10.15 -0.01 9.93 16 10 O -0.59 -28.03 13.16 -148.98 -1.96 -29.99 16 11 C -0.13 -4.85 5.37 31.77 0.17 -4.68 16 12 C 0.06 1.64 6.52 86.64 0.56 2.21 16 13 N -0.52 -15.99 5.20 -680.65 -3.54 -19.52 16 14 C 0.23 5.81 4.80 39.56 0.19 6.00 16 15 C -0.15 -2.56 7.75 22.22 0.17 -2.39 16 16 C 0.08 1.23 9.40 22.00 0.21 1.43 16 17 C -0.05 -1.06 6.85 36.34 0.25 -0.81 16 18 N 0.04 0.94 4.46 -46.47 -0.21 0.74 16 19 O -0.13 -3.15 18.36 18.88 0.35 -2.81 16 20 O -0.20 -6.14 18.47 18.88 0.35 -5.80 16 21 C 0.04 1.10 7.19 42.58 0.31 1.40 16 22 N -0.33 -9.25 11.95 -57.38 -0.69 -9.94 16 23 O 0.39 10.33 11.67 139.26 1.63 11.96 16 24 N -0.31 -8.99 12.27 -55.28 -0.68 -9.67 16 25 C 0.02 0.67 7.92 44.02 0.35 1.01 16 26 C 0.07 2.49 5.71 86.77 0.50 2.98 16 27 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 28 H 0.37 18.14 7.56 -74.06 -0.56 17.58 16 29 H 0.06 2.66 7.53 -2.38 -0.02 2.64 16 30 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.08 1.89 7.04 -2.39 -0.02 1.87 16 33 H 0.20 2.72 7.61 -2.91 -0.02 2.69 16 34 H 0.21 1.62 7.47 -2.91 -0.02 1.60 16 35 H 0.08 2.51 6.65 -2.38 -0.02 2.49 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -56.33 317.34 1.48 -54.85 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.62 Total: 19.79 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.35 Total: -6.24 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -4.88 Total: -81.52 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: 0.36 Total: -26.63 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -56.33 1.48 -54.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.726 kcal (2) G-P(sol) polarization free energy of solvation -56.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds