Wall clock time and date at job start Fri Apr 10 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00256 * 2 1 4 4 H 1.48500 * 109.47038 * 270.00007 * 3 2 1 5 5 H 1.48498 * 109.46865 * 29.99880 * 3 2 1 6 6 H 1.48499 * 109.47099 * 149.99764 * 3 2 1 7 7 C 1.37878 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00131 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77474 * 298.20878 * 9 7 2 11 11 C 1.55156 * 110.72284 * 174.97650 * 9 7 2 12 12 C 1.55132 * 101.48515 * 205.96621 * 11 9 7 13 13 N 1.47422 * 104.72312 * 37.29117 * 12 11 9 14 14 C 1.34775 * 125.64920 * 155.81594 * 13 12 11 15 15 O 1.21544 * 120.00217 * 185.43889 * 14 13 12 16 16 C 1.47949 * 119.99811 * 5.44097 * 14 13 12 17 17 C 1.39607 * 119.99134 * 204.59935 * 16 14 13 18 18 C 1.37753 * 120.00673 * 180.23203 * 17 16 14 19 19 C 1.39666 * 119.99119 * 359.51811 * 18 17 16 20 20 C 1.47742 * 120.00822 * 180.21142 * 19 18 17 21 21 N 1.34770 * 120.00130 * 35.27097 * 20 19 18 22 22 S 1.71208 * 120.00054 * 215.27360 * 20 19 18 23 23 C 1.39676 * 119.98774 * 0.48605 * 19 18 17 24 24 C 1.37752 * 119.98725 * 359.74608 * 23 19 18 25 25 C 1.47029 * 108.70457 * 335.55419 * 13 12 11 26 26 H 0.97004 * 119.99548 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99721 * 61.78647 * 10 9 7 28 28 H 1.09005 * 110.99820 * 324.20394 * 11 9 7 29 29 H 1.08997 * 111.00507 * 88.01878 * 11 9 7 30 30 H 1.08997 * 110.49470 * 278.45318 * 12 11 9 31 31 H 1.08994 * 110.34092 * 156.05691 * 12 11 9 32 32 H 1.08001 * 120.00224 * 359.96064 * 17 16 14 33 33 H 1.07995 * 120.00460 * 179.74605 * 18 17 16 34 34 H 0.97000 * 120.00141 * 0.02562 * 21 20 19 35 35 H 0.96998 * 120.00584 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.00438 * 179.77120 * 23 19 18 37 37 H 1.08003 * 119.99425 * 180.02562 * 24 23 19 38 38 H 1.09000 * 109.88006 * 120.69842 * 25 13 12 39 39 H 1.08997 * 109.88233 * 241.71166 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4501 -2.6221 1.1777 11 6 2.2284 -3.6975 -0.1259 12 6 1.3164 -4.7732 -0.7720 13 7 0.4651 -4.0254 -1.7151 14 6 -0.1403 -4.5393 -2.8040 15 8 -0.7401 -3.8083 -3.5678 16 6 -0.0750 -5.9933 -3.0696 17 6 -0.2209 -6.4718 -4.3730 18 6 -0.1649 -7.8259 -4.6200 19 6 0.0479 -8.7193 -3.5678 20 6 0.1126 -10.1713 -3.8330 21 7 0.6643 -10.6235 -4.9764 22 16 -0.5132 -11.2794 -2.6877 23 6 0.1936 -8.2402 -2.2639 24 6 0.1328 -6.8864 -2.0169 25 6 0.3809 -2.6274 -1.2676 26 1 -0.4850 0.8401 0.0004 27 1 -0.2297 -1.9397 1.2639 28 1 3.0676 -3.4501 -0.7761 29 1 2.5785 -4.0212 0.8543 30 1 0.7043 -5.2605 -0.0131 31 1 1.9179 -5.5091 -1.3055 32 1 -0.3820 -5.7807 -5.1872 33 1 -0.2818 -8.1963 -5.6277 34 1 1.0192 -9.9957 -5.6251 35 1 0.7072 -11.5768 -5.1504 36 1 0.3545 -8.9311 -1.4495 37 1 0.2459 -6.5158 -1.0088 38 1 0.7605 -1.9655 -2.0460 39 1 -0.6538 -2.3735 -1.0374 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:21 Heat of formation + Delta-G solvation = -32.559010 kcal Electronic energy + Delta-G solvation = -24149.694281 eV Core-core repulsion = 20569.711989 eV Total energy + Delta-G solvation = -3579.982292 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42790 -39.01743 -37.41651 -36.69548 -34.50145 -32.29620 -31.80881 -31.45727 -30.07737 -27.96953 -26.47141 -25.04216 -23.34672 -22.96508 -21.80574 -19.91365 -19.45015 -19.01154 -17.68452 -17.33113 -17.04248 -15.88736 -15.85378 -15.47021 -14.97190 -14.84334 -14.49349 -14.18663 -13.91611 -13.67747 -13.31043 -13.11455 -12.95111 -12.69206 -12.52882 -12.16717 -11.84259 -11.56639 -11.40706 -11.26709 -11.07834 -10.86572 -10.70754 -10.54705 -10.26605 -9.67762 -9.43063 -9.35756 -9.30717 -8.74170 -8.52543 -8.40089 -8.05514 -7.96719 -6.34472 -4.43267 -0.27585 1.00534 1.05406 1.70243 2.74242 3.00386 3.17194 3.25391 3.27587 3.37641 3.63462 3.79649 4.22283 4.42190 4.61122 4.61676 4.93677 4.96938 5.08479 5.22772 5.34586 5.57510 5.65368 5.73111 5.78747 5.83295 5.87475 6.02997 6.07190 6.15084 6.33369 6.39066 6.45592 6.65230 6.74704 6.82443 7.16837 7.27759 7.66762 7.92621 8.02267 8.48106 8.60869 9.21983 9.31408 10.73354 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002766 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.259790 B =10120.365218 C =10544.057093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.093 3.907 13 N -0.601 5.601 14 C 0.555 3.445 15 O -0.541 6.541 16 C -0.081 4.081 17 C -0.072 4.072 18 C -0.093 4.093 19 C -0.103 4.103 20 C 0.400 3.600 21 N -0.762 5.762 22 S -0.554 6.554 23 C -0.053 4.053 24 C -0.104 4.104 25 C 0.103 3.897 26 H 0.271 0.729 27 H 0.383 0.617 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.405 0.595 35 H 0.423 0.577 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -16.014 -9.522 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.029 4.029 13 N -0.332 5.332 14 C 0.342 3.658 15 O -0.420 6.420 16 C -0.086 4.086 17 C -0.091 4.091 18 C -0.116 4.116 19 C -0.108 4.108 20 C 0.145 3.855 21 N -0.295 5.295 22 S -0.418 6.418 23 C -0.074 4.074 24 C -0.122 4.122 25 C -0.018 4.018 26 H 0.081 0.919 27 H 0.233 0.767 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.237 0.763 35 H 0.257 0.743 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.088 0.912 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.798 -16.827 -9.205 19.384 hybrid contribution 0.422 1.837 -1.212 2.241 sum 3.220 -14.990 -10.417 18.537 Atomic orbital electron populations 1.69689 1.06001 1.28021 1.49507 1.25075 0.95060 0.99811 0.93314 0.86398 0.79824 0.82388 0.78290 1.20431 1.20952 1.19667 1.21481 0.93684 0.90016 1.52491 0.91487 1.19498 0.86474 0.92154 0.81087 1.86115 1.51665 1.56694 1.44810 1.22833 0.97414 0.94965 1.00439 1.22713 0.92824 0.95530 0.91847 1.48741 1.47209 1.13287 1.24010 1.17905 0.80109 0.86789 0.80948 1.90774 1.44072 1.60631 1.46566 1.20423 0.99543 0.94138 0.94447 1.21159 0.96608 0.94882 0.96479 1.21132 0.99728 0.92872 0.97826 1.19125 1.06853 0.89282 0.95586 1.24321 0.79174 0.95543 0.86422 1.43480 1.54339 1.13363 1.18300 1.93394 1.54130 1.51904 1.42421 1.21451 0.95238 0.95598 0.95133 1.22016 0.97102 0.92485 1.00606 1.23114 1.01967 0.77785 0.98966 0.91935 0.76687 0.90299 0.90249 0.90992 0.91364 0.83925 0.85191 0.76316 0.74289 0.83343 0.82917 0.91155 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.98 55.43 0.61 -22.47 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.51 8.12 -34.44 -0.28 -13.79 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.25 5.66 0.85 -89.94 -0.08 5.59 16 10 O -0.58 -13.88 13.08 -35.23 -0.46 -14.34 16 11 C -0.12 -2.18 6.24 -24.46 -0.15 -2.33 16 12 C 0.09 1.48 4.98 -2.41 -0.01 1.46 16 13 N -0.60 -11.44 3.32 -171.45 -0.57 -12.01 16 14 C 0.55 10.29 7.64 -12.28 -0.09 10.19 16 15 O -0.54 -11.92 16.93 5.33 0.09 -11.83 16 16 C -0.08 -1.13 5.68 -104.90 -0.60 -1.72 16 17 C -0.07 -0.83 9.57 -39.25 -0.38 -1.20 16 18 C -0.09 -0.80 9.31 -39.23 -0.37 -1.17 16 19 C -0.10 -0.99 5.74 -104.94 -0.60 -1.59 16 20 C 0.40 3.56 7.04 -12.38 -0.09 3.47 16 21 N -0.76 -3.28 8.77 32.71 0.29 -3.00 16 22 S -0.55 -7.39 29.90 -107.50 -3.21 -10.60 16 23 C -0.05 -0.56 9.40 -39.22 -0.37 -0.93 16 24 C -0.10 -1.24 8.05 -39.25 -0.32 -1.56 16 25 C 0.10 2.35 5.24 -3.06 -0.02 2.34 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.38 9.38 7.47 45.56 0.34 9.72 16 28 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.07 6.84 -51.93 -0.35 0.71 16 31 H 0.07 0.88 6.81 -51.93 -0.35 0.52 16 32 H 0.14 1.60 7.83 -52.49 -0.41 1.19 16 33 H 0.13 0.67 7.58 -52.49 -0.40 0.27 16 34 H 0.40 0.65 7.98 -40.82 -0.33 0.32 16 35 H 0.42 1.29 8.81 -40.82 -0.36 0.93 16 36 H 0.15 1.52 7.53 -52.49 -0.40 1.12 16 37 H 0.15 1.78 4.57 -52.48 -0.24 1.54 16 38 H 0.07 1.77 7.81 -51.93 -0.41 1.37 16 39 H 0.07 1.72 7.93 -51.93 -0.41 1.31 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -32.05 340.41 -10.28 -42.33 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.70 Total: 11.44 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.43 Total: 0.46 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.33 Total: -37.48 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.37 Total: -26.17 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -3.21 Total: -10.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.05 -10.28 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.771 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds