Wall clock time and date at job start Fri Apr 10 2020 18:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 C 1.46505 * 120.00155 * 299.99972 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00096 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 N 1.65604 * 107.21800 * 89.99874 * 14 12 2 18 18 C 1.47120 * 125.39907 * 269.69810 * 17 14 12 19 19 C 1.53952 * 105.64746 * 160.98778 * 18 17 14 20 20 H 1.09003 * 111.26341 * 273.32669 * 19 18 17 21 21 C 1.53206 * 110.86240 * 150.10166 * 19 18 17 22 22 S 1.82848 * 104.23205 * 278.26028 * 21 19 18 23 23 C 1.82661 * 98.00390 * 342.07874 * 22 21 19 24 24 C 1.53824 * 105.80240 * 359.09051 * 23 22 21 25 25 H 1.09004 * 111.88927 * 255.11971 * 24 23 22 26 26 C 1.46873 * 125.39870 * 90.00023 * 17 14 12 27 27 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 28 28 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 32 32 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 33 33 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 34 34 H 1.08999 * 110.18973 * 280.17723 * 18 17 14 35 35 H 1.08995 * 110.19772 * 42.03900 * 18 17 14 36 36 H 1.08999 * 110.48379 * 36.95218 * 21 19 18 37 37 H 1.09000 * 110.48106 * 159.44358 * 21 19 18 38 38 H 1.09003 * 110.18604 * 240.00863 * 23 22 21 39 39 H 1.08997 * 110.18559 * 118.17479 * 23 22 21 40 40 H 1.09001 * 109.85947 * 298.04609 * 26 17 14 41 41 H 1.08994 * 109.85600 * 58.99748 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8180 18 6 5.2918 0.7760 -0.9072 19 6 6.4815 -0.0616 -0.4040 20 1 6.2079 -0.6512 0.4711 21 6 7.6845 0.8333 -0.0891 22 16 8.4714 1.1173 -1.7149 23 6 7.6911 -0.2643 -2.6199 24 6 6.7979 -0.9847 -1.5955 25 1 7.2368 -1.9260 -1.2646 26 6 5.4154 -1.2043 -2.2511 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9026 -0.5281 4.4376 31 1 0.7375 -2.1445 -1.9992 32 1 2.4628 -2.5821 -1.9862 33 1 1.5295 -2.5969 -0.4706 34 1 5.6476 1.6562 -1.4426 35 1 4.6615 1.0737 -0.0693 36 1 7.3545 1.7771 0.3450 37 1 8.3723 0.3241 0.5860 38 1 8.4541 -0.9448 -2.9979 39 1 7.0868 0.1184 -3.4423 40 1 4.9985 -2.1574 -1.9257 41 1 5.5126 -1.1942 -3.3367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885612567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:28 Heat of formation + Delta-G solvation = -62.814988 kcal Electronic energy + Delta-G solvation = -24801.446954 eV Core-core repulsion = 21355.596616 eV Total energy + Delta-G solvation = -3445.850339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.37107 -36.89783 -36.44134 -35.42890 -33.09155 -32.59404 -31.28682 -30.09345 -26.66405 -25.93279 -25.74634 -25.11321 -22.14836 -20.89316 -19.87029 -18.68361 -17.54961 -17.32536 -16.63336 -16.58224 -15.97387 -15.55846 -14.94692 -14.39590 -14.21583 -13.75054 -13.39022 -13.27091 -13.23663 -12.97381 -12.89292 -12.76958 -12.37889 -12.19074 -12.11221 -12.00056 -11.75736 -11.58800 -11.43818 -11.32866 -11.28575 -11.02149 -11.00464 -10.90216 -10.61746 -10.20678 -9.99131 -9.66259 -9.51835 -8.82250 -8.72407 -8.17840 -7.73929 -6.24734 -4.26073 0.99322 1.75130 2.26087 3.17699 3.27229 3.30816 3.33226 3.92061 4.24179 4.26479 4.30272 4.45124 4.78044 4.89186 4.90861 5.07327 5.20849 5.28636 5.40197 5.43236 5.48021 5.55562 5.59584 5.69471 5.87203 5.94608 6.02226 6.10322 6.12325 6.17425 6.24873 6.36600 6.44963 6.52911 6.60565 6.82225 7.22173 7.29542 7.55888 8.34493 8.77350 9.36487 10.87296 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.005613 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.174914 B = 4987.077784 C = 5978.335359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.056 0.944 4 C -0.527 4.527 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.984 5.984 13 C 0.105 3.895 14 S 2.796 3.204 15 O -0.988 6.988 16 O -0.976 6.976 17 N -1.014 6.014 18 C 0.129 3.871 19 C -0.100 4.100 20 H 0.113 0.887 21 C -0.060 4.060 22 S -0.294 6.294 23 C -0.067 4.067 24 C -0.097 4.097 25 H 0.106 0.894 26 C 0.132 3.868 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 -1.347 -8.519 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.073 0.927 4 C -0.566 4.566 5 H 0.101 0.899 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.705 3.295 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.825 5.825 13 C -0.041 4.041 14 S 2.807 3.193 15 O -0.973 6.973 16 O -0.960 6.960 17 N -0.852 5.852 18 C 0.004 3.996 19 C -0.121 4.121 20 H 0.131 0.869 21 C -0.208 4.208 22 S -0.068 6.068 23 C -0.215 4.215 24 C -0.118 4.118 25 H 0.124 0.876 26 C 0.005 3.995 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.307 -0.012 -9.484 13.288 hybrid contribution -1.346 -0.420 1.101 1.789 sum 7.961 -0.432 -8.383 11.569 Atomic orbital electron populations 1.22412 0.98767 1.01377 0.99190 1.19098 0.91047 0.93319 0.83222 0.92664 1.21183 1.32941 1.14236 0.88231 0.89950 1.24876 0.95478 0.96519 0.95740 1.69869 1.45077 1.40036 0.97997 0.87046 0.80936 0.83956 0.77592 1.20272 1.22113 1.18605 1.57570 1.64212 1.21686 1.39014 1.21249 0.99074 0.81566 1.02248 1.01457 0.71557 0.73306 0.73014 1.93548 1.85724 1.76362 1.41629 1.93579 1.83509 1.32116 1.86809 1.58990 1.29050 1.36040 1.61149 1.21798 0.92406 0.92329 0.93109 1.22487 0.94618 0.96042 0.98984 0.86918 1.23817 0.97913 1.03504 0.95588 1.87350 1.63258 1.44468 1.11724 1.24077 1.00765 0.96752 0.99919 1.22685 0.95183 1.00098 0.93832 0.87605 1.21801 0.88912 0.90041 0.98767 0.94704 0.92258 0.93298 0.92415 0.93694 0.92984 0.89708 0.91000 0.89433 0.87491 0.88649 0.88609 0.88553 0.91356 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.67 37.16 0.32 -3.02 16 2 C 0.24 5.31 2.21 -69.08 -0.15 5.16 16 3 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 4 C -0.53 -13.18 8.57 -34.44 -0.30 -13.47 16 5 H 0.08 2.19 7.57 -52.49 -0.40 1.79 16 6 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 8 Si 0.88 20.61 24.37 -169.99 -4.14 16.47 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 12 N -0.98 -19.10 3.12 -115.85 -0.36 -19.46 16 13 C 0.10 1.76 9.28 59.85 0.56 2.31 16 14 S 2.80 52.37 6.29 -107.50 -0.68 51.70 16 15 O -0.99 -19.22 16.78 -57.17 -0.96 -20.18 16 16 O -0.98 -21.02 16.27 -57.17 -0.93 -21.95 16 17 N -1.01 -15.77 3.75 -112.18 -0.42 -16.19 16 18 C 0.13 1.90 6.19 -3.21 -0.02 1.88 16 19 C -0.10 -1.19 3.38 -89.49 -0.30 -1.49 16 20 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 21 C -0.06 -0.64 6.68 37.26 0.25 -0.39 16 22 S -0.29 -3.46 22.86 -107.50 -2.46 -5.91 16 23 C -0.07 -0.67 6.62 37.59 0.25 -0.43 16 24 C -0.10 -1.01 3.66 -88.84 -0.33 -1.33 16 25 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 26 C 0.13 1.62 6.35 -3.01 -0.02 1.60 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 29 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 33 H 0.08 1.49 7.01 -51.93 -0.36 1.12 16 34 H 0.07 1.04 7.65 -51.93 -0.40 0.64 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.11 1.11 8.03 -51.93 -0.42 0.69 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.01 7.26 -51.93 -0.38 0.64 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.84 7.35 -51.93 -0.38 0.46 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -30.70 338.00 -10.10 -40.80 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.18 Total: 1.11 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 0.16 Total: -7.22 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.01 Total: -59.90 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.89 Total: -42.13 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.14 Total: 16.47 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -3.13 Total: 45.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.70 -10.10 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885612567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.016 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds