Wall clock time and date at job start Fri Apr 10 2020 18:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46774 * 2 1 4 4 C 1.46497 * 119.99957 * 274.99542 * 3 2 1 5 5 C 1.50698 * 109.47339 * 275.00045 * 4 3 2 6 6 H 1.07998 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00107 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00045 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00156 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47181 * 90.00577 * 9 7 5 11 11 H 1.48501 * 109.47709 * 210.00375 * 9 7 5 12 12 H 1.48496 * 109.47310 * 330.00694 * 9 7 5 13 13 S 1.65597 * 119.99943 * 95.00080 * 3 2 1 14 14 O 1.42099 * 106.40499 * 336.45500 * 13 3 2 15 15 O 1.42107 * 106.40356 * 203.53501 * 13 3 2 16 16 N 1.65604 * 107.21867 * 89.99794 * 13 3 2 17 17 C 1.46852 * 125.38993 * 90.00071 * 16 13 3 18 18 C 1.54472 * 107.56081 * 181.08749 * 17 16 13 19 19 H 1.09007 * 111.85439 * 219.16956 * 18 17 16 20 20 C 1.54342 * 107.55493 * 95.04271 * 18 17 16 21 21 S 1.82798 * 104.35297 * 215.76890 * 20 18 17 22 22 C 1.82787 * 97.95553 * 18.56152 * 21 20 18 23 23 C 1.52828 * 105.52868 * 0.78528 * 22 21 20 24 24 H 1.09000 * 110.15526 * 216.59677 * 23 22 21 25 25 C 1.47087 * 125.38692 * 269.99689 * 16 13 3 26 26 H 1.08994 * 109.47302 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.46864 * 60.00193 * 1 2 3 28 28 H 1.09005 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47241 * 239.99944 * 2 1 3 30 30 H 1.09001 * 109.46864 * 119.99807 * 2 1 3 31 31 H 1.08999 * 109.47044 * 35.00687 * 4 3 2 32 32 H 1.09001 * 109.47363 * 155.00488 * 4 3 2 33 33 H 0.97006 * 119.99945 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.85064 * 300.61992 * 17 16 13 35 35 H 1.08997 * 109.85100 * 61.55091 * 17 16 13 36 36 H 1.09007 * 110.36629 * 97.08328 * 20 18 17 37 37 H 1.09002 * 110.63065 * 334.58377 * 20 18 17 38 38 H 1.09007 * 110.23593 * 241.77089 * 22 21 20 39 39 H 1.08996 * 110.30988 * 119.84273 * 22 21 20 40 40 H 1.08995 * 110.17918 * 317.89274 * 25 16 13 41 41 H 1.08998 * 110.17167 * 79.70766 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8822 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8516 10 1 5.3730 0.7804 -4.7386 11 1 5.9780 3.1269 -4.6467 12 1 6.4928 1.6680 -2.7793 13 16 2.4121 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 5.1336 2.6512 1.2638 18 6 6.4406 1.9715 1.7287 19 1 7.1762 2.6989 2.0722 20 6 6.9598 1.1110 0.5574 21 16 7.6898 -0.3584 1.3635 22 6 6.8611 -0.1955 2.9845 23 6 5.9733 1.0430 2.8676 24 1 5.9606 1.5865 3.8124 25 6 4.5416 0.6596 2.4577 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1802 -1.0757 33 1 3.2795 3.5880 -4.5379 34 1 5.1236 2.7296 0.1767 35 1 5.0547 3.6439 1.7071 36 1 7.7195 1.6541 -0.0048 37 1 6.1391 0.8182 -0.0974 38 1 7.6002 -0.0564 3.7736 39 1 6.2535 -1.0770 3.1891 40 1 3.9340 0.4737 3.3433 41 1 4.5572 -0.2238 1.8194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885613411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:33 Heat of formation + Delta-G solvation = -79.062438 kcal Electronic energy + Delta-G solvation = -24939.634474 eV Core-core repulsion = 21493.079593 eV Total energy + Delta-G solvation = -3446.554881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31085 -36.73537 -36.05317 -35.27071 -33.01809 -32.75482 -31.18531 -29.97082 -26.69027 -26.52601 -25.84175 -23.16345 -22.08824 -21.66243 -19.83125 -18.60646 -17.43238 -16.98597 -16.54293 -16.33198 -15.97033 -15.47873 -14.74439 -14.38822 -14.15429 -13.81863 -13.43618 -13.24294 -13.16323 -12.97712 -12.80767 -12.62940 -12.11758 -12.04623 -12.00066 -11.73016 -11.63143 -11.39979 -11.38032 -11.25686 -11.10947 -10.99165 -10.94800 -10.85181 -10.53813 -10.44105 -10.10074 -9.87827 -9.78387 -8.70419 -8.54253 -8.10136 -7.66358 -6.16092 -4.22988 1.16144 1.83649 2.35566 3.20229 3.27522 3.28973 3.42126 4.03149 4.27362 4.31372 4.38988 4.54281 4.85444 4.97266 5.00395 5.17876 5.21262 5.30907 5.37269 5.43278 5.51095 5.63088 5.72303 5.77024 5.79031 5.86725 5.93439 5.99835 6.08146 6.21421 6.29784 6.38433 6.55576 6.63649 6.73599 7.31959 7.40335 7.61504 7.81013 8.10786 8.81916 9.42940 10.91822 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.007840 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.997015 B = 3570.780826 C = 5311.805796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S 2.798 3.202 14 O -0.994 6.994 15 O -0.973 6.973 16 N -1.013 6.013 17 C 0.126 3.874 18 C -0.094 4.094 19 H 0.106 0.894 20 C -0.065 4.065 21 S -0.296 6.296 22 C -0.061 4.061 23 C -0.101 4.101 24 H 0.099 0.901 25 C 0.125 3.875 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -5.486 11.508 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.122 3.878 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.808 3.192 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.851 5.851 17 C -0.001 4.001 18 C -0.115 4.115 19 H 0.124 0.876 20 C -0.213 4.213 21 S -0.070 6.070 22 C -0.210 4.210 23 C -0.122 4.122 24 H 0.118 0.882 25 C -0.001 4.001 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.511 -5.648 11.458 13.913 hybrid contribution 0.401 0.382 -0.545 0.777 sum 5.912 -5.266 10.914 13.483 Atomic orbital electron populations 1.22205 0.96877 1.01423 1.02381 1.20973 0.93679 0.82886 1.02057 1.57791 1.78068 1.22987 1.24267 1.19202 0.97379 0.92192 0.78982 1.21525 1.02246 1.27979 1.06063 0.91934 1.24946 0.97158 0.94807 0.96855 1.69933 1.35963 1.29681 1.17008 0.86644 0.84028 0.77994 0.79622 1.20623 1.21138 1.19568 1.01408 0.71649 0.73339 0.72815 1.93532 1.69918 1.76588 1.57841 1.93577 1.85466 1.30726 1.85994 1.58982 1.23831 1.34151 1.68144 1.21839 0.83363 0.93124 1.01742 1.22860 0.97825 0.97770 0.93031 0.87620 1.24313 1.03674 0.93915 0.99396 1.87374 1.63325 1.41123 1.15182 1.23633 1.00359 1.00436 0.96570 1.22338 0.94990 0.94845 1.00057 0.88244 1.21745 0.93262 0.89124 0.95986 0.92683 0.92047 0.92311 0.90200 0.92072 0.94355 0.93208 0.92554 0.88765 0.91337 0.88024 0.87547 0.88738 0.88382 0.90207 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.13 2.23 6.06 -4.04 -0.02 2.21 16 3 N -0.99 -19.89 2.82 -115.67 -0.33 -20.21 16 4 C 0.24 5.87 5.43 -5.20 -0.03 5.84 16 5 C -0.54 -13.39 8.90 -34.44 -0.31 -13.70 16 6 H 0.06 1.49 7.69 -52.49 -0.40 1.09 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 S 2.80 54.74 6.30 -107.50 -0.68 54.06 16 14 O -0.99 -19.83 16.48 -57.17 -0.94 -20.78 16 15 O -0.97 -22.27 16.26 -57.17 -0.93 -23.20 16 16 N -1.01 -16.40 3.75 -112.38 -0.42 -16.82 16 17 C 0.13 1.92 6.31 -3.08 -0.02 1.90 16 18 C -0.09 -1.12 3.73 -88.52 -0.33 -1.45 16 19 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.07 -0.89 6.41 37.86 0.24 -0.65 16 21 S -0.30 -3.86 23.27 -107.50 -2.50 -6.37 16 22 C -0.06 -0.60 6.74 37.07 0.25 -0.36 16 23 C -0.10 -1.08 3.28 -89.68 -0.29 -1.38 16 24 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 25 C 0.13 1.63 6.24 -3.32 -0.02 1.61 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.06 0.94 7.61 -51.93 -0.40 0.54 16 31 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.09 1.66 7.08 -51.93 -0.37 1.29 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.11 1.71 7.50 -51.93 -0.39 1.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.88 7.86 -51.93 -0.41 0.47 16 40 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 41 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.32 351.96 -11.53 -41.85 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.50 Total: 1.82 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.25 Total: -6.63 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.01 Total: -61.00 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.87 Total: -43.98 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -3.18 Total: 47.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.32 -11.53 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885613411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.208 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds