Wall clock time and date at job start Fri Apr 10 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46774 * 2 1 4 4 C 1.46497 * 119.99957 * 274.99542 * 3 2 1 5 5 C 1.50698 * 109.47339 * 275.00045 * 4 3 2 6 6 H 1.07998 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00107 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00045 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00156 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47181 * 90.00577 * 9 7 5 11 11 H 1.48501 * 109.47709 * 210.00375 * 9 7 5 12 12 H 1.48496 * 109.47310 * 330.00694 * 9 7 5 13 13 S 1.65597 * 119.99943 * 95.00080 * 3 2 1 14 14 O 1.42099 * 106.40499 * 336.45500 * 13 3 2 15 15 O 1.42107 * 106.40356 * 203.53501 * 13 3 2 16 16 N 1.65604 * 107.21867 * 89.99794 * 13 3 2 17 17 C 1.46852 * 125.38993 * 90.00071 * 16 13 3 18 18 C 1.54472 * 107.56081 * 181.08749 * 17 16 13 19 19 H 1.09007 * 111.85439 * 219.16956 * 18 17 16 20 20 C 1.54342 * 107.55493 * 95.04271 * 18 17 16 21 21 S 1.82798 * 104.35297 * 215.76890 * 20 18 17 22 22 C 1.82787 * 97.95553 * 18.56152 * 21 20 18 23 23 C 1.52828 * 105.52868 * 0.78528 * 22 21 20 24 24 H 1.09000 * 110.15526 * 216.59677 * 23 22 21 25 25 C 1.47087 * 125.38692 * 269.99689 * 16 13 3 26 26 H 1.08994 * 109.47302 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.46864 * 60.00193 * 1 2 3 28 28 H 1.09005 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47241 * 239.99944 * 2 1 3 30 30 H 1.09001 * 109.46864 * 119.99807 * 2 1 3 31 31 H 1.08999 * 109.47044 * 35.00687 * 4 3 2 32 32 H 1.09001 * 109.47363 * 155.00488 * 4 3 2 33 33 H 0.97006 * 119.99945 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.85064 * 300.61992 * 17 16 13 35 35 H 1.08997 * 109.85100 * 61.55091 * 17 16 13 36 36 H 1.09007 * 110.36629 * 97.08328 * 20 18 17 37 37 H 1.09002 * 110.63065 * 334.58377 * 20 18 17 38 38 H 1.09007 * 110.23593 * 241.77089 * 22 21 20 39 39 H 1.08996 * 110.30988 * 119.84273 * 22 21 20 40 40 H 1.08995 * 110.17918 * 317.89274 * 25 16 13 41 41 H 1.08998 * 110.17167 * 79.70766 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8822 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8516 10 1 5.3730 0.7804 -4.7386 11 1 5.9780 3.1269 -4.6467 12 1 6.4928 1.6680 -2.7793 13 16 2.4121 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 5.1336 2.6512 1.2638 18 6 6.4406 1.9715 1.7287 19 1 7.1762 2.6989 2.0722 20 6 6.9598 1.1110 0.5574 21 16 7.6898 -0.3584 1.3635 22 6 6.8611 -0.1955 2.9845 23 6 5.9733 1.0430 2.8676 24 1 5.9606 1.5865 3.8124 25 6 4.5416 0.6596 2.4577 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1802 -1.0757 33 1 3.2795 3.5880 -4.5379 34 1 5.1236 2.7296 0.1767 35 1 5.0547 3.6439 1.7071 36 1 7.7195 1.6541 -0.0048 37 1 6.1391 0.8182 -0.0974 38 1 7.6002 -0.0564 3.7736 39 1 6.2535 -1.0770 3.1891 40 1 3.9340 0.4737 3.3433 41 1 4.5572 -0.2238 1.8194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885613411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:32 Heat of formation + Delta-G solvation = -98.818430 kcal Electronic energy + Delta-G solvation = -24940.491158 eV Core-core repulsion = 21493.079593 eV Total energy + Delta-G solvation = -3447.411565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36611 -38.37647 -37.69184 -36.93399 -34.70608 -34.12762 -32.18225 -31.54923 -28.51059 -27.61797 -26.88393 -24.93984 -23.35638 -23.06078 -20.80214 -20.04051 -18.86859 -18.71123 -18.18011 -17.61017 -17.21385 -16.90040 -16.43995 -15.75450 -15.37650 -15.08011 -14.80567 -14.72958 -14.33165 -14.12141 -14.04245 -13.84853 -13.78899 -13.62854 -13.38058 -13.26365 -13.08214 -13.02453 -12.75509 -12.70532 -12.54603 -12.37681 -12.28227 -12.12398 -11.95155 -11.79531 -11.75635 -11.59828 -10.84705 -10.58853 -9.99364 -9.78044 -8.65267 -8.17467 -6.30556 -0.38386 0.90373 1.40745 1.42576 1.43315 1.51471 1.93928 2.40666 2.53146 3.14120 3.16732 3.33560 3.54126 3.68512 3.94911 3.95115 4.08781 4.28745 4.35434 4.40859 4.44839 4.51555 4.62135 4.63990 4.67476 4.73572 4.74917 4.94742 4.96989 5.00635 5.09524 5.11284 5.17711 5.25816 5.35596 5.43013 5.55715 5.75912 5.96118 6.10500 6.81600 7.39382 8.90805 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.007840 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.997015 B = 3570.780826 C = 5311.805796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.261 3.739 5 C -0.533 4.533 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.253 1.253 13 S 2.810 3.190 14 O -0.997 6.997 15 O -1.013 7.013 16 N -1.012 6.012 17 C 0.121 3.879 18 C -0.082 4.082 19 H 0.135 0.865 20 C -0.064 4.064 21 S -0.329 6.329 22 C -0.047 4.047 23 C -0.092 4.092 24 H 0.129 0.871 25 C 0.115 3.885 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -7.061 13.611 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.137 3.863 5 C -0.572 4.572 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.176 1.176 13 S 2.820 3.180 14 O -0.982 6.982 15 O -0.997 6.997 16 N -0.852 5.852 17 C -0.006 4.006 18 C -0.103 4.103 19 H 0.153 0.847 20 C -0.212 4.212 21 S -0.103 6.103 22 C -0.195 4.195 23 C -0.113 4.113 24 H 0.147 0.853 25 C -0.010 4.010 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.376 -7.257 13.585 17.077 hybrid contribution -0.220 0.823 -1.131 1.416 sum 7.156 -6.434 12.454 15.739 Atomic orbital electron populations 1.22191 0.95802 1.03296 1.01334 1.21228 0.94700 0.81325 1.03057 1.57724 1.78974 1.24052 1.22914 1.18715 0.96630 0.90696 0.80216 1.21761 1.02398 1.27270 1.05787 0.91038 1.25739 1.00482 0.94713 0.97538 1.70066 1.38006 1.31219 1.17553 0.85678 0.80379 0.77441 0.79018 1.20506 1.21412 1.17621 1.00815 0.72354 0.72339 0.72451 1.93517 1.70722 1.76354 1.57565 1.93523 1.86455 1.33312 1.86434 1.58690 1.22842 1.35459 1.68224 1.21915 0.84767 0.93870 1.00059 1.22907 0.96385 0.98106 0.92895 0.84699 1.24199 1.02704 0.94549 0.99780 1.87516 1.63828 1.41099 1.17880 1.23748 1.00563 1.00376 0.94785 1.22356 0.93118 0.95218 1.00565 0.85345 1.22058 0.95080 0.87814 0.96026 0.93373 0.93420 0.88988 0.90362 0.89797 0.96283 0.96585 0.92653 0.91867 0.90873 0.87859 0.90594 0.85949 0.87094 0.88902 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 10.24 71.98 0.74 -4.38 16 2 C 0.12 4.11 6.06 86.38 0.52 4.63 16 3 N -1.00 -40.69 2.82 -519.86 -1.47 -42.16 16 4 C 0.26 13.07 5.43 85.63 0.47 13.53 16 5 C -0.53 -27.08 8.90 25.60 0.23 -26.85 16 6 H 0.07 3.44 7.69 -2.91 -0.02 3.42 16 7 C 0.01 0.78 5.46 84.65 0.46 1.25 16 8 N -0.93 -53.35 13.29 21.45 0.28 -53.07 16 9 Si 0.95 41.31 29.54 68.60 2.03 43.33 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 13 S 2.81 110.22 6.30 -56.49 -0.36 109.86 16 14 O -1.00 -38.76 16.48 -128.00 -2.11 -40.87 16 15 O -1.01 -47.76 16.26 -128.00 -2.08 -49.84 16 16 N -1.01 -31.68 3.75 -509.45 -1.91 -33.59 16 17 C 0.12 3.57 6.31 86.81 0.55 4.12 16 18 C -0.08 -1.74 3.73 -9.43 -0.04 -1.78 16 19 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 20 C -0.06 -1.65 6.41 72.44 0.46 -1.19 16 21 S -0.33 -7.76 23.27 -56.49 -1.31 -9.07 16 22 C -0.05 -0.72 6.74 71.92 0.48 -0.23 16 23 C -0.09 -1.60 3.28 -10.18 -0.03 -1.63 16 24 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 25 C 0.12 2.69 6.24 86.53 0.54 3.23 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 30 H 0.08 2.42 7.61 -2.39 -0.02 2.41 16 31 H 0.02 1.01 8.11 -2.39 -0.02 0.99 16 32 H 0.02 0.91 6.91 -2.39 -0.02 0.90 16 33 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 34 H 0.06 2.27 7.08 -2.39 -0.02 2.25 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.08 2.41 7.50 -2.39 -0.02 2.39 16 38 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.11 1.49 7.86 -2.39 -0.02 1.47 16 40 H 0.09 1.95 7.87 -2.39 -0.02 1.93 16 41 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 Total: -1.00 -67.39 351.96 -1.54 -68.92 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.01 Total: 15.78 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.38 Total: -9.30 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -3.09 Total: -128.82 kcal Atomic # 8 Polarization: -86.52 SS G_CDS: -4.19 Total: -90.71 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 102.46 SS G_CDS: -1.67 Total: 100.79 kcal Total: -67.39 -1.54 -68.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885613411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.896 kcal (2) G-P(sol) polarization free energy of solvation -67.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds