Wall clock time and date at job start Fri Apr 10 2020 18:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47244 * 239.99545 * 3 2 1 5 5 H 1.48498 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47012 * 119.99739 * 3 2 1 7 7 C 1.38800 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00127 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47336 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99854 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00162 * 179.97438 * 11 10 9 14 14 C 1.47047 * 121.35333 * 353.96655 * 13 11 10 15 15 C 1.50436 * 108.88846 * 137.23551 * 14 13 11 16 16 O 1.21282 * 118.48470 * 192.70198 * 15 14 13 17 17 N 1.33375 * 123.02412 * 12.71017 * 15 14 13 18 18 C 1.45648 * 124.59180 * 355.67597 * 17 15 14 19 19 C 1.47267 * 121.35027 * 173.93809 * 13 11 10 20 20 H 1.09003 * 109.72000 * 121.85564 * 19 13 11 21 21 C 1.50694 * 109.72389 * 1.24799 * 19 13 11 22 22 C 1.38237 * 120.00051 * 276.28297 * 21 19 13 23 23 C 1.38229 * 120.00329 * 179.81080 * 22 21 19 24 24 C 1.38239 * 120.00049 * 0.39257 * 23 22 21 25 25 C 1.38238 * 119.99649 * 359.85530 * 24 23 22 26 26 C 1.38232 * 120.00170 * 96.55197 * 21 19 13 27 27 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47308 * 60.00256 * 10 9 7 29 29 H 1.08996 * 109.47449 * 299.99885 * 10 9 7 30 30 H 1.08996 * 109.56558 * 257.05931 * 14 13 11 31 31 H 1.08997 * 109.56720 * 17.41433 * 14 13 11 32 32 H 0.97001 * 117.70688 * 175.65300 * 17 15 14 33 33 H 1.08995 * 109.21864 * 261.57047 * 18 17 15 34 34 H 1.09006 * 109.21861 * 142.22992 * 18 17 15 35 35 H 1.08006 * 119.99671 * 359.97438 * 22 21 19 36 36 H 1.08003 * 120.00651 * 180.23096 * 23 22 21 37 37 H 1.07999 * 120.00324 * 179.83494 * 24 23 22 38 38 H 1.07999 * 119.99719 * 179.97438 * 25 24 23 39 39 H 1.08000 * 120.00257 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0037 14 6 4.2945 -6.1400 -0.1283 15 6 5.0031 -7.0401 0.8468 16 8 6.1831 -6.8526 1.0548 17 7 4.3934 -8.0348 1.4931 18 6 2.9676 -8.3214 1.4133 19 6 2.3657 -7.7295 0.1374 20 1 2.6856 -8.3138 -0.7255 21 6 0.8617 -7.7418 0.2303 22 6 0.2427 -7.5276 1.4476 23 6 -1.1370 -7.5350 1.5323 24 6 -1.8977 -7.7646 0.4011 25 6 -1.2786 -7.9839 -0.8153 26 6 0.1012 -7.9728 -0.9006 27 1 -0.4850 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8925 29 1 3.1251 -3.7318 -0.8874 30 1 4.6064 -6.3844 -1.1437 31 1 4.5389 -5.1006 0.0903 32 1 4.9377 -8.6079 2.0554 33 1 2.4660 -7.8907 2.2798 34 1 2.8181 -9.4012 1.4130 35 1 0.8370 -7.3519 2.3322 36 1 -1.6208 -7.3640 2.4826 37 1 -2.9756 -7.7730 0.4676 38 1 -1.8728 -8.1637 -1.6990 39 1 0.5848 -8.1440 -1.8510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886853892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:36 Heat of formation + Delta-G solvation = -40.074482 kcal Electronic energy + Delta-G solvation = -24652.662761 eV Core-core repulsion = 21072.354573 eV Total energy + Delta-G solvation = -3580.308188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14439 -40.43039 -39.36451 -37.50607 -35.35909 -34.58370 -33.56627 -31.66484 -30.68330 -29.47051 -28.08534 -27.61851 -25.25536 -23.40014 -22.59623 -21.69775 -20.11067 -19.56578 -18.48149 -18.22884 -17.68162 -17.38064 -16.91660 -16.87284 -16.44543 -16.24359 -15.93891 -15.72294 -15.33013 -14.81997 -14.77192 -14.50855 -14.22794 -14.06238 -13.80529 -13.52822 -13.34870 -13.23969 -13.12974 -12.94443 -12.87776 -12.61973 -11.89877 -11.77574 -11.73623 -11.60774 -11.13220 -11.01067 -10.26781 -10.21339 -9.83284 -9.54028 -9.06208 -8.63967 -8.34941 -6.11247 0.52733 0.70769 1.24570 1.40456 1.42526 1.43668 1.53237 1.58687 1.92790 2.20042 2.27356 2.99367 3.03290 3.20222 3.24520 3.55349 3.65587 3.89478 3.93697 4.06858 4.23880 4.25946 4.30719 4.36145 4.38322 4.46321 4.48698 4.65368 4.78168 4.95982 5.16926 5.25704 5.30232 5.41653 5.68240 5.69484 5.76296 5.80093 6.06589 6.12052 6.19342 6.30764 7.02295 7.07102 7.12634 8.73588 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.004529 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.113901 B = 6181.496391 C = 8097.200542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.079 0.921 9 S -0.132 6.132 10 C -0.134 4.134 11 C 0.538 3.462 12 O -0.504 6.504 13 N -0.612 5.612 14 C 0.096 3.904 15 C 0.516 3.484 16 O -0.587 6.587 17 N -0.703 5.703 18 C 0.101 3.899 19 C 0.171 3.829 20 H 0.118 0.882 21 C -0.050 4.050 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -21.392 0.734 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.698 4.698 8 H 0.097 0.903 9 S 0.095 5.905 10 C -0.285 4.285 11 C 0.325 3.675 12 O -0.378 6.378 13 N -0.350 5.350 14 C -0.029 4.029 15 C 0.303 3.697 16 O -0.467 6.467 17 N -0.354 5.354 18 C -0.023 4.023 19 C 0.069 3.931 20 H 0.135 0.865 21 C -0.051 4.051 22 C -0.128 4.128 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.133 4.133 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.441 -21.351 0.705 21.639 hybrid contribution 1.639 1.415 0.269 2.182 sum 5.080 -19.936 0.974 20.596 Atomic orbital electron populations 1.70157 1.07824 1.28616 1.47986 1.26026 0.95887 1.03038 0.93753 0.85093 0.77918 0.76144 0.79426 1.18725 1.20294 1.18921 1.23181 0.95281 0.92452 1.58903 0.90329 1.85439 1.09570 0.98479 1.96966 1.23468 1.03862 0.95276 1.05871 1.19921 0.86305 0.85664 0.75610 1.90856 1.15636 1.83753 1.47521 1.48240 1.06262 1.05541 1.74975 1.22039 0.78342 1.01671 1.00849 1.20379 0.86787 0.81232 0.81342 1.90802 1.17736 1.72001 1.66170 1.45273 1.10212 1.31659 1.48208 1.22059 0.79266 1.03509 0.97513 1.20594 0.91193 0.81696 0.99648 0.86469 1.19201 0.92952 0.98738 0.94178 1.20948 0.94974 0.99569 0.97352 1.21202 0.94299 1.00005 0.99018 1.21281 1.00278 1.00564 0.93250 1.21230 0.94978 1.00247 0.97936 1.20957 0.94180 1.00601 0.97517 0.92004 0.88500 0.87677 0.84885 0.86239 0.75157 0.90753 0.85185 0.86246 0.85817 0.85487 0.85226 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 2 C 0.02 1.02 5.49 84.86 0.47 1.49 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.55 -31.15 9.50 67.95 0.65 -30.50 16 8 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 9 S -0.13 -7.07 20.57 -56.49 -1.16 -8.23 16 10 C -0.13 -5.12 4.56 71.24 0.32 -4.80 16 11 C 0.54 18.00 7.61 87.66 0.67 18.67 16 12 O -0.50 -19.86 11.16 -3.03 -0.03 -19.89 16 13 N -0.61 -14.24 2.98 -803.58 -2.39 -16.63 16 14 C 0.10 1.91 6.42 85.45 0.55 2.45 16 15 C 0.52 10.92 7.84 87.79 0.69 11.60 16 16 O -0.59 -16.98 17.80 -3.04 -0.05 -17.03 16 17 N -0.70 -10.46 5.42 -467.10 -2.53 -12.99 16 18 C 0.10 1.28 6.44 86.54 0.56 1.83 16 19 C 0.17 3.04 3.19 44.09 0.14 3.18 16 20 H 0.12 1.54 8.05 -2.39 -0.02 1.52 16 21 C -0.05 -1.15 2.85 -19.87 -0.06 -1.21 16 22 C -0.11 -2.77 7.59 22.27 0.17 -2.60 16 23 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 24 C -0.14 -3.49 10.05 22.27 0.22 -3.26 16 25 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 26 C -0.11 -2.75 8.89 22.27 0.20 -2.55 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.10 3.53 7.81 -2.39 -0.02 3.51 16 29 H 0.11 3.67 7.94 -2.40 -0.02 3.66 16 30 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 2.57 6.24 -2.39 -0.01 2.55 16 32 H 0.41 4.86 8.80 -92.71 -0.82 4.04 16 33 H 0.07 1.09 5.85 -2.39 -0.01 1.07 16 34 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.12 2.72 6.09 -2.91 -0.02 2.70 16 36 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.85 337.96 1.43 -76.42 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.28 Total: 19.48 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.02 Total: -11.73 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.64 Total: -84.61 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.09 Total: -36.92 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.16 Total: -8.23 kcal Total: -77.85 1.43 -76.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886853892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.348 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds