Wall clock time and date at job start Fri Apr 10 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 110.54492 * 2 1 4 4 O 1.42105 * 110.54194 * 223.24844 * 2 1 3 5 5 N 1.65597 * 104.44805 * 111.62313 * 2 1 3 6 6 C 1.47428 * 125.64744 * 87.53257 * 5 2 1 7 7 C 1.54688 * 104.94139 * 204.07213 * 6 5 2 8 8 C 1.55156 * 101.67831 * 323.27691 * 7 6 5 9 9 C 1.47021 * 125.64909 * 267.83973 * 5 2 1 10 10 H 1.08998 * 109.88295 * 59.48907 * 9 5 2 11 11 C 1.50698 * 109.88431 * 298.47661 * 9 5 2 12 12 O 1.20834 * 119.99866 * 332.42272 * 11 9 5 13 13 O 1.34218 * 120.00431 * 152.42330 * 11 9 5 14 14 C 1.45202 * 117.00494 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47400 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00201 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00088 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99857 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00141 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99735 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00014 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46742 * 90.00418 * 22 20 18 24 24 H 1.48501 * 109.47026 * 209.99863 * 22 20 18 25 25 H 1.48496 * 109.47531 * 330.00474 * 22 20 18 26 26 H 1.09002 * 109.46882 * 312.17005 * 1 2 3 27 27 H 1.08998 * 109.46798 * 72.16908 * 1 2 3 28 28 H 1.08999 * 109.46937 * 192.16411 * 1 2 3 29 29 H 1.08999 * 110.36520 * 323.00179 * 6 5 2 30 30 H 1.09001 * 110.36838 * 85.32420 * 6 5 2 31 31 H 1.08999 * 111.10364 * 205.11099 * 7 6 5 32 32 H 1.08999 * 110.84988 * 81.33480 * 7 6 5 33 33 H 1.09001 * 110.72219 * 276.97153 * 8 7 6 34 34 H 1.09002 * 110.72050 * 153.69764 * 8 7 6 35 35 H 1.09006 * 109.46959 * 299.99596 * 14 13 11 36 36 H 1.08995 * 109.47509 * 59.99543 * 14 13 11 37 37 H 0.97003 * 120.00113 * 359.97438 * 17 15 14 38 38 H 0.96995 * 119.99678 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4907 6 6 2.3916 -2.0150 1.8351 7 6 2.1562 -2.0857 3.3623 8 6 2.8050 -0.7604 3.8419 9 6 2.4846 0.2173 2.6916 10 1 1.6005 0.8046 2.9397 11 6 3.6572 1.1330 2.4515 12 8 4.5164 0.8199 1.6617 13 8 3.7472 2.2962 3.1150 14 6 4.9034 3.1282 2.8332 15 6 4.8341 4.3830 3.6649 16 8 3.9018 4.5591 4.4205 17 7 5.8081 5.3095 3.5691 18 6 5.7448 6.4513 4.3254 19 1 4.9142 6.6084 4.9976 20 6 6.7494 7.4064 4.2271 21 7 7.7597 7.2154 3.4089 22 14 6.6627 8.9624 5.2570 23 1 7.3478 8.7356 6.5550 24 1 7.3304 10.0734 4.5324 25 1 5.2413 9.3151 5.5026 26 1 -0.3633 0.6899 0.7617 27 1 -0.3633 0.3147 -0.9783 28 1 -0.3633 -1.0046 0.2165 29 1 1.6537 -2.6202 1.3086 30 1 3.4004 -2.3497 1.5933 31 1 2.6613 -2.9479 3.7978 32 1 1.0904 -2.1037 3.5901 33 1 3.8822 -0.8786 3.9589 34 1 2.3496 -0.4229 4.7730 35 1 5.8135 2.5804 3.0778 36 1 4.9117 3.3927 1.7758 37 1 6.5540 5.1686 2.9651 38 1 8.4611 7.8819 3.3405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116016549.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:58 Heat of formation + Delta-G solvation = -176.754081 kcal Electronic energy + Delta-G solvation = -25375.896331 eV Core-core repulsion = 21346.519258 eV Total energy + Delta-G solvation = -4029.377074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56528 -38.64560 -37.82160 -37.30390 -36.13645 -35.85959 -33.94359 -31.42163 -31.33431 -30.35915 -29.80262 -28.11776 -24.75014 -23.66128 -21.97966 -21.09246 -19.51480 -19.05544 -18.08124 -18.07748 -17.86906 -16.59718 -16.35170 -16.16058 -15.98495 -15.62066 -15.08422 -14.47820 -14.43332 -14.00036 -13.88318 -13.75478 -13.55514 -13.44550 -13.14045 -12.92449 -12.42957 -12.25997 -12.19459 -12.07043 -11.90362 -11.76832 -11.63798 -11.58122 -11.30395 -11.24572 -11.09870 -10.42663 -10.40888 -10.28822 -10.25274 -9.55809 -9.41274 -8.45641 -8.03300 -6.45273 -3.87198 -0.10832 2.16329 2.40969 2.76710 3.16396 3.25973 3.32285 3.67039 3.68991 3.80053 4.06326 4.13660 4.21878 4.41988 4.52883 4.62622 4.69192 4.83002 5.06018 5.11237 5.18410 5.20510 5.27471 5.40822 5.46338 5.49992 5.61855 5.67491 5.79788 5.82185 5.91422 6.12963 6.73337 7.52004 7.91928 8.02727 8.53985 9.11695 9.44927 9.95014 10.72106 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.002882 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.027257 B = 9712.670855 C =10144.503537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.619 3.381 3 O -0.936 6.936 4 O -0.946 6.946 5 N -0.996 5.996 6 C 0.121 3.879 7 C -0.129 4.129 8 C -0.115 4.115 9 C 0.165 3.835 10 H 0.113 0.887 11 C 0.448 3.552 12 O -0.497 6.497 13 O -0.323 6.323 14 C 0.061 3.939 15 C 0.441 3.559 16 O -0.577 6.577 17 N -0.554 5.554 18 C -0.302 4.302 19 H 0.106 0.894 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 -20.360 -3.269 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.713 3.287 3 O -0.926 6.926 4 O -0.937 6.937 5 N -0.833 5.833 6 C -0.004 4.004 7 C -0.167 4.167 8 C -0.154 4.154 9 C 0.056 3.944 10 H 0.131 0.869 11 C 0.288 3.712 12 O -0.384 6.384 13 O -0.236 6.236 14 C -0.016 4.016 15 C 0.226 3.774 16 O -0.461 6.461 17 N -0.191 5.191 18 C -0.431 4.431 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.193 1.193 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.229 0.771 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.455 -19.866 -3.817 24.295 hybrid contribution 0.056 0.693 0.133 0.708 sum -13.398 -19.173 -3.684 23.679 Atomic orbital electron populations 1.30596 1.28494 1.11541 1.11699 1.04829 0.77525 0.74278 0.72111 1.93681 1.77106 1.37086 1.84718 1.93610 1.77442 1.62038 1.60578 1.58667 1.83720 1.14616 1.26337 1.22023 1.02617 0.79837 0.95917 1.22796 1.01870 0.97667 0.94412 1.22617 1.02995 0.93419 0.96368 1.20789 0.95519 0.91615 0.86445 0.86928 1.23851 0.87693 0.81304 0.78391 1.90648 1.40468 1.74073 1.33260 1.86489 1.45845 1.29357 1.61951 1.22746 0.86569 0.91212 1.01103 1.19330 0.85708 0.85102 0.87292 1.90545 1.34841 1.78958 1.41774 1.41707 1.21279 1.17214 1.38902 1.19726 1.08494 0.94688 1.20185 0.87625 1.25314 0.95183 0.99781 0.97541 1.69620 1.10942 1.36586 1.36657 0.85797 0.78707 0.80243 0.79169 1.20310 1.20854 1.19295 0.85055 0.85252 0.85409 0.90158 0.90473 0.89184 0.90013 0.89686 0.88158 0.89684 0.89288 0.77139 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.84 10.99 101.05 1.11 -2.73 16 2 S 2.62 28.89 6.19 -107.50 -0.67 28.22 16 3 O -0.94 -14.91 15.74 -63.07 -0.99 -15.91 16 4 O -0.95 -13.01 17.64 -57.54 -1.02 -14.02 16 5 N -1.00 -9.96 3.00 -105.76 -0.32 -10.28 16 6 C 0.12 0.86 6.91 -2.65 -0.02 0.84 16 7 C -0.13 -0.64 7.07 -24.70 -0.17 -0.82 16 8 C -0.12 -0.90 6.47 -24.89 -0.16 -1.06 16 9 C 0.16 1.83 3.54 -68.10 -0.24 1.58 16 10 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.45 7.51 5.60 36.00 0.20 7.71 16 12 O -0.50 -9.55 15.75 -23.27 -0.37 -9.91 16 13 O -0.32 -6.31 9.75 -45.87 -0.45 -6.75 16 14 C 0.06 1.26 5.94 36.00 0.21 1.47 16 15 C 0.44 11.01 7.86 -10.99 -0.09 10.93 16 16 O -0.58 -16.27 16.08 -14.11 -0.23 -16.50 16 17 N -0.55 -14.44 5.29 -10.96 -0.06 -14.49 16 18 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.13 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 36 H 0.09 1.77 8.13 -51.93 -0.42 1.35 16 37 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -39.29 343.69 -7.49 -46.79 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.89 Total: 5.71 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 0.60 Total: 9.85 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.35 Total: -48.61 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -3.05 Total: -63.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 28.89 SS G_CDS: -0.67 Total: 28.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -39.29 -7.49 -46.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116016549.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.967 kcal (2) G-P(sol) polarization free energy of solvation -39.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds