Wall clock time and date at job start Fri Apr 10 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54353 * 2 1 4 4 O 1.42099 * 110.53717 * 223.24994 * 2 1 3 5 5 N 1.65596 * 104.44931 * 111.62413 * 2 1 3 6 6 C 1.46497 * 120.00256 * 263.72145 * 5 2 1 7 7 C 1.52996 * 109.47139 * 265.00152 * 6 5 2 8 8 N 1.46894 * 109.47366 * 179.97438 * 7 6 5 9 9 C 1.38540 * 119.99999 * 83.72094 * 5 2 1 10 10 C 1.40042 * 120.44942 * 174.36161 * 9 5 2 11 11 C 1.38798 * 118.59066 * 179.97438 * 10 9 5 12 12 Cl 1.73605 * 120.33896 * 180.02562 * 11 10 9 13 13 N 1.32205 * 119.32871 * 0.02562 * 11 10 9 14 14 C 1.33422 * 120.85939 * 359.97438 * 13 11 10 15 15 C 1.41582 * 119.23723 * 179.72006 * 14 13 11 16 16 H 1.08003 * 119.99869 * 180.02562 * 15 14 13 17 17 C 1.40052 * 119.99774 * 0.02562 * 15 14 13 18 18 N 1.30688 * 120.00265 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99727 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47221 * 90.00219 * 19 17 15 21 21 H 1.48497 * 109.47179 * 210.00320 * 19 17 15 22 22 H 1.48500 * 109.47380 * 330.00002 * 19 17 15 23 23 N 1.32572 * 120.44914 * 354.33214 * 9 5 2 24 24 H 1.08997 * 109.46910 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47123 * 59.99980 * 1 2 3 26 26 H 1.08997 * 109.47648 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47075 * 24.99997 * 6 5 2 28 28 H 1.09000 * 109.47431 * 144.99646 * 6 5 2 29 29 H 1.09006 * 109.47010 * 299.99884 * 7 6 5 30 30 H 1.09000 * 109.47372 * 59.99458 * 7 6 5 31 31 H 1.00901 * 111.00379 * 179.97438 * 8 7 6 32 32 H 1.00901 * 111.00355 * 303.95570 * 8 7 6 33 33 H 1.07996 * 120.70454 * 359.97438 * 10 9 5 34 34 H 0.96999 * 120.00123 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2272 -0.5909 1.4907 6 6 2.5444 0.3327 2.5827 7 6 4.0585 0.5420 2.6502 8 7 4.3765 1.4686 3.7447 9 6 2.2730 -1.9589 1.7053 10 6 2.7339 -2.4710 2.9245 11 6 2.7629 -3.8478 3.0981 12 17 3.3251 -4.5316 4.5915 13 7 2.3581 -4.6332 2.1147 14 6 1.9235 -4.1189 0.9628 15 6 1.5036 -4.9920 -0.0696 16 1 1.1500 -4.5890 -1.0071 17 6 1.5469 -6.3783 0.1250 18 7 1.9743 -6.8659 1.2597 19 14 0.9922 -7.5303 -1.2369 20 1 2.1503 -7.8659 -2.1036 21 1 0.4436 -8.7744 -0.6400 22 1 -0.0584 -6.8663 -2.0497 23 7 1.8806 -2.8008 0.7593 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0530 1.2892 2.4039 28 1 2.1930 -0.0854 3.5260 29 1 4.5498 -0.4145 2.8290 30 1 4.4099 0.9601 1.7069 31 1 5.3715 1.6229 3.8103 32 1 3.8814 2.3409 3.6354 33 1 3.0598 -1.8088 3.7128 34 1 2.0045 -7.8261 1.3943 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162124871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:05 Heat of formation + Delta-G solvation = -38.551397 kcal Electronic energy + Delta-G solvation = -23260.737671 eV Core-core repulsion = 19574.522336 eV Total energy + Delta-G solvation = -3686.215335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.050 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19437 -38.53801 -38.09665 -37.38822 -36.96663 -35.70681 -34.98079 -33.17540 -31.60967 -30.36241 -28.71590 -28.10937 -24.53525 -24.03912 -22.88536 -20.82960 -19.43950 -18.97028 -18.32670 -17.47126 -17.31849 -16.75886 -16.62593 -16.37704 -15.85797 -15.62775 -15.54519 -14.90122 -14.68706 -14.66283 -14.19925 -14.01131 -13.73557 -13.24964 -13.23940 -13.15299 -13.11020 -12.98207 -12.79523 -12.74772 -12.24680 -12.08332 -12.01430 -11.91109 -11.78782 -11.03336 -10.96955 -10.33033 -9.67416 -9.54729 -9.47955 -8.48366 -6.81979 -0.79861 0.56184 0.85762 1.06360 1.40389 1.44056 1.52718 1.59142 2.21007 2.67126 2.86152 3.10210 3.22009 3.70690 3.77880 3.98131 4.03237 4.07042 4.15041 4.25329 4.41699 4.51580 4.62163 4.87129 4.88905 4.96029 4.96795 5.16138 5.20726 5.73953 6.11798 6.14144 6.40284 6.56401 6.61015 6.94471 8.04556 8.31172 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.005795 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.969744 B = 4830.272839 C = 6679.206048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.597 3.403 3 O -0.974 6.974 4 O -0.963 6.963 5 N -0.911 5.911 6 C 0.112 3.888 7 C 0.044 3.956 8 N -0.840 5.840 9 C 0.433 3.567 10 C -0.368 4.368 11 C 0.245 3.755 12 Cl -0.050 7.050 13 N -0.548 5.548 14 C 0.403 3.597 15 C -0.415 4.415 16 H 0.097 0.903 17 C 0.025 3.975 18 N -0.733 5.733 19 Si 0.998 3.002 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.253 1.253 23 N -0.626 5.626 24 H 0.156 0.844 25 H 0.156 0.844 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.354 0.646 32 H 0.352 0.648 33 H 0.150 0.850 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 11.738 2.602 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.696 3.304 3 O -0.964 6.964 4 O -0.953 6.953 5 N -0.737 5.737 6 C -0.012 4.012 7 C -0.089 4.089 8 N -0.373 5.373 9 C 0.187 3.813 10 C -0.401 4.401 11 C 0.064 3.936 12 Cl -0.022 7.022 13 N -0.269 5.269 14 C 0.167 3.833 15 C -0.450 4.450 16 H 0.116 0.884 17 C -0.200 4.200 18 N -0.354 5.354 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.186 1.186 22 H -0.176 1.176 23 N -0.354 5.354 24 H 0.174 0.826 25 H 0.175 0.825 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.598 10.617 1.893 11.093 hybrid contribution 0.318 0.297 0.002 0.435 sum -2.280 10.915 1.895 11.310 Atomic orbital electron populations 1.30235 1.22799 1.12729 1.13859 1.05298 0.79996 0.72683 0.72457 1.93556 1.79636 1.37655 1.85581 1.93650 1.78773 1.61075 1.61770 1.55337 1.78491 1.08652 1.31229 1.21658 0.96421 0.92653 0.90514 1.22056 0.96107 0.97701 0.92994 1.58574 1.14585 1.17946 1.46160 1.18077 0.89368 0.84107 0.89711 1.21339 1.23781 0.93894 1.01058 1.21955 0.93077 0.89256 0.89272 1.98301 1.87015 1.86923 1.29956 1.68631 1.19390 1.37706 1.01213 1.19813 0.88913 0.85179 0.89368 1.19767 1.35518 0.90625 0.99101 0.88447 1.27048 0.93673 1.00021 0.99267 1.70191 1.26241 1.15142 1.23864 0.84969 0.79476 0.76691 0.77185 1.18854 1.18573 1.17627 1.68358 1.30557 1.04850 1.31651 0.82611 0.82548 0.85461 0.86312 0.87566 0.91798 0.95799 0.83202 0.83445 0.83239 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -14.02 10.99 113.37 1.25 -12.77 16 2 S 2.60 82.39 5.79 -56.49 -0.33 82.06 16 3 O -0.97 -30.54 16.76 -127.65 -2.14 -32.68 16 4 O -0.96 -41.71 15.97 -127.65 -2.04 -43.75 16 5 N -0.91 -30.20 2.90 -344.55 -1.00 -31.20 16 6 C 0.11 2.81 4.86 86.38 0.42 3.23 16 7 C 0.04 1.14 6.92 86.30 0.60 1.74 16 8 N -0.84 -16.13 9.62 -186.73 -1.80 -17.93 16 9 C 0.43 18.61 7.22 133.39 0.96 19.57 16 10 C -0.37 -15.50 8.59 22.84 0.20 -15.30 16 11 C 0.24 11.63 7.33 84.77 0.62 12.25 16 12 Cl -0.05 -2.01 29.15 -2.72 -0.08 -2.09 16 13 N -0.55 -29.93 7.86 -185.03 -1.45 -31.38 16 14 C 0.40 22.37 7.37 135.16 1.00 23.37 16 15 C -0.42 -22.42 9.37 23.54 0.22 -22.20 16 16 H 0.10 5.10 7.85 -2.91 -0.02 5.08 16 17 C 0.03 1.23 5.50 85.30 0.47 1.70 16 18 N -0.73 -37.88 11.42 21.84 0.25 -37.63 16 19 Si 1.00 36.79 29.56 68.60 2.03 38.82 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 22 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 23 N -0.63 -31.63 8.09 -191.53 -1.55 -33.18 16 24 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.16 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 27 H 0.12 2.23 7.42 -2.38 -0.02 2.21 16 28 H 0.11 2.52 6.77 -2.39 -0.02 2.51 16 29 H 0.06 1.92 7.22 -2.38 -0.02 1.91 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.35 5.79 9.08 -89.69 -0.81 4.98 16 32 H 0.35 5.28 8.99 -89.69 -0.81 4.47 16 33 H 0.15 5.35 5.99 -2.91 -0.02 5.33 16 34 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 Total: -1.00 -72.28 320.76 -2.81 -75.09 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.44 Total: 22.28 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.73 Total: 11.58 kcal Atomic # 7 Polarization: -145.77 SS G_CDS: -5.55 Total: -151.31 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -4.18 Total: -76.43 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 82.39 SS G_CDS: -0.33 Total: 82.06 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -72.28 -2.81 -75.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162124871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.541 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds