Wall clock time and date at job start Fri Apr 10 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38544 * 119.99828 * 2 1 4 4 C 1.40039 * 120.44840 * 0.02562 * 3 2 1 5 5 C 1.38799 * 118.59110 * 179.97438 * 4 3 2 6 6 Cl 1.73608 * 120.33782 * 179.97438 * 5 4 3 7 7 N 1.32203 * 119.32864 * 359.97438 * 5 4 3 8 8 C 1.33426 * 120.85871 * 0.02562 * 7 5 4 9 9 C 1.41576 * 119.23781 * 180.26978 * 8 7 5 10 10 H 1.07997 * 119.99541 * 173.27201 * 9 8 7 11 11 C 1.40053 * 119.99843 * 353.28390 * 9 8 7 12 12 N 1.30692 * 120.00053 * 6.23182 * 11 9 8 13 13 Si 1.86801 * 119.99672 * 186.23921 * 11 9 8 14 14 H 1.48501 * 109.46964 * 94.98559 * 13 11 9 15 15 H 1.48499 * 109.46928 * 214.97751 * 13 11 9 16 16 H 1.48494 * 109.47279 * 334.98101 * 13 11 9 17 17 N 1.32562 * 120.44926 * 179.97438 * 3 2 1 18 18 S 1.65601 * 120.00204 * 179.97438 * 2 1 3 19 19 O 1.42098 * 104.27642 * 26.07007 * 18 2 1 20 20 O 1.42091 * 104.27535 * 153.93052 * 18 2 1 21 21 C 1.81401 * 104.45025 * 270.00243 * 18 2 1 22 22 C 1.52993 * 109.47281 * 179.97438 * 21 18 2 23 23 N 1.46895 * 109.47312 * 179.97438 * 22 21 18 24 24 H 1.08999 * 109.47457 * 90.00293 * 1 2 3 25 25 H 1.09006 * 109.47389 * 210.00206 * 1 2 3 26 26 H 1.09004 * 109.47609 * 329.99851 * 1 2 3 27 27 H 1.08007 * 120.70671 * 359.95274 * 4 3 2 28 28 H 0.97006 * 119.99566 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.46721 * 299.99839 * 21 18 2 30 30 H 1.08999 * 109.47182 * 59.99677 * 21 18 2 31 31 H 1.08996 * 109.47161 * 299.99929 * 22 21 18 32 32 H 1.09004 * 109.46729 * 60.00091 * 22 21 18 33 33 H 1.00900 * 110.99934 * 56.05285 * 23 22 21 34 34 H 1.00906 * 111.00537 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1577 1.1998 0.0000 4 6 1.4670 2.4180 0.0005 5 6 2.1995 3.5970 0.0011 6 17 1.3896 5.1326 0.0011 7 7 3.5202 3.5387 0.0016 8 6 4.1535 2.3643 0.0010 9 6 5.5690 2.3419 0.0074 10 1 6.0937 1.4042 0.1167 11 6 6.2888 3.5356 -0.1277 12 7 5.6592 4.6808 -0.1372 13 14 8.1488 3.4908 -0.2946 14 1 8.5176 3.5196 -1.7328 15 1 8.7358 4.6704 0.3905 16 1 8.6717 2.2471 0.3258 17 7 3.4833 1.2103 0.0005 18 16 2.2930 -1.4341 0.0006 19 8 1.3970 -2.3564 -0.6041 20 8 3.5394 -1.1193 -0.6047 21 6 2.5193 -1.8254 1.7574 22 6 3.2808 -3.1455 1.8920 23 7 3.4646 -3.4620 3.3146 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 0.3871 2.4398 0.0002 28 1 6.1578 5.5076 -0.2312 29 1 3.0866 -1.0277 2.2371 30 1 1.5451 -1.9178 2.2375 31 1 2.7132 -3.9429 1.4124 32 1 4.2551 -3.0534 1.4118 33 1 2.5785 -3.4890 3.7964 34 1 3.9652 -4.3305 3.4302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164286899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:07 Heat of formation + Delta-G solvation = -8.876998 kcal Electronic energy + Delta-G solvation = -23004.795840 eV Core-core repulsion = 19319.867284 eV Total energy + Delta-G solvation = -3684.928556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.050 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.37695 -36.83264 -36.29464 -35.66812 -35.64001 -35.45548 -33.61066 -31.51658 -29.91425 -29.50779 -26.91755 -26.11204 -23.13235 -22.38393 -21.73322 -19.19051 -18.02214 -17.37438 -16.84480 -16.50614 -16.05135 -15.42773 -15.05620 -14.89349 -14.73113 -14.16379 -14.14627 -13.88905 -13.69902 -13.17568 -12.95977 -12.48747 -12.30199 -11.82184 -11.71927 -11.69361 -11.57292 -11.47811 -11.35641 -11.24906 -10.88159 -10.64802 -10.43323 -10.30259 -10.25127 -9.30061 -9.14570 -8.99372 -8.54404 -7.83203 -7.61525 -6.69225 -4.88427 0.41501 2.36643 2.59525 2.68808 2.95137 3.03348 3.07417 3.09702 3.83160 3.99294 4.33316 4.42583 4.50898 4.53453 4.70508 4.83683 5.14423 5.41077 5.47806 5.58352 5.68462 5.78298 5.84018 5.93357 6.15305 6.36947 6.56498 6.79555 6.82973 6.98246 7.15819 7.41776 8.08396 8.27138 8.41064 8.78492 9.90465 10.09017 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.005603 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.212873 B = 4996.260513 C = 6790.969254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.919 5.919 3 C 0.427 3.573 4 C -0.383 4.383 5 C 0.266 3.734 6 Cl -0.075 7.075 7 N -0.514 5.514 8 C 0.424 3.576 9 C -0.376 4.376 10 H 0.103 0.897 11 C 0.062 3.938 12 N -0.698 5.698 13 Si 0.923 3.077 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.256 1.256 17 N -0.595 5.595 18 S 2.603 3.397 19 O -0.966 6.966 20 O -0.889 6.889 21 C -0.631 4.631 22 C 0.076 3.924 23 N -0.840 5.840 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.279 0.721 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.342 0.658 34 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -8.801 4.385 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.746 5.746 3 C 0.181 3.819 4 C -0.417 4.417 5 C 0.084 3.916 6 Cl -0.047 7.047 7 N -0.235 5.235 8 C 0.190 3.810 9 C -0.411 4.411 10 H 0.121 0.879 11 C -0.167 4.167 12 N -0.318 5.318 13 Si 0.746 3.254 14 H -0.191 1.191 15 H -0.199 1.199 16 H -0.180 1.180 17 N -0.322 5.322 18 S 2.695 3.305 19 O -0.957 6.957 20 O -0.878 6.878 21 C -0.759 4.759 22 C -0.056 4.056 23 N -0.371 5.371 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.035 -8.296 3.646 10.366 hybrid contribution -1.235 -0.290 0.428 1.339 sum -6.270 -8.586 4.074 11.385 Atomic orbital electron populations 1.21651 0.77317 1.03526 1.03356 1.55190 1.15419 1.19842 1.84178 1.17913 0.89396 0.83846 0.90725 1.21005 0.99703 0.90579 1.30413 1.21481 0.91568 0.84749 0.93832 1.98307 1.77447 1.32312 1.96626 1.68642 1.05045 1.28810 1.21008 1.19513 0.93912 0.79279 0.88312 1.19518 0.87720 0.95061 1.38756 0.87854 1.26191 1.01891 0.94822 0.93771 1.70136 1.37634 0.98459 1.25580 0.86051 0.80535 0.79331 0.79526 1.19143 1.19888 1.17996 1.68562 1.03582 1.31869 1.28188 1.05616 0.74675 0.72799 0.77409 1.93569 1.66131 1.62379 1.73577 1.93750 1.41984 1.80449 1.71663 1.30729 1.09290 1.07683 1.28195 1.21370 1.00339 0.92681 0.91225 1.58639 1.26350 1.41181 1.10917 0.91395 0.90725 0.89583 0.86224 0.90924 0.83562 0.86020 0.94231 0.89079 0.84566 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 9.67 59.85 0.58 1.70 16 2 N -0.92 -16.15 3.29 -67.04 -0.22 -16.37 16 3 C 0.43 9.44 7.31 -154.99 -1.13 8.30 16 4 C -0.38 -8.22 9.11 -38.70 -0.35 -8.58 16 5 C 0.27 6.33 7.33 -17.18 -0.13 6.21 16 6 Cl -0.07 -1.51 29.15 -51.86 -1.51 -3.02 16 7 N -0.51 -13.87 7.89 -9.83 -0.08 -13.95 16 8 C 0.42 11.63 7.36 -158.34 -1.17 10.46 16 9 C -0.38 -10.02 9.37 -37.63 -0.35 -10.37 16 10 H 0.10 2.67 7.85 -52.49 -0.41 2.26 16 11 C 0.06 1.52 5.49 -17.36 -0.10 1.42 16 12 N -0.70 -17.82 11.45 55.55 0.64 -17.18 16 13 Si 0.92 18.15 29.56 -169.99 -5.03 13.12 16 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 17 N -0.59 -15.17 7.71 -11.89 -0.09 -15.26 16 18 S 2.60 43.94 5.25 -107.50 -0.56 43.38 16 19 O -0.97 -16.68 17.09 -57.54 -0.98 -17.66 16 20 O -0.89 -19.21 15.50 -57.54 -0.89 -20.11 16 21 C -0.63 -8.27 6.44 37.15 0.24 -8.03 16 22 C 0.08 0.90 6.79 -3.83 -0.03 0.88 16 23 N -0.84 -8.55 9.62 -10.37 -0.10 -8.65 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 26 H 0.09 1.00 6.22 -51.93 -0.32 0.68 16 27 H 0.12 2.15 6.25 -52.48 -0.33 1.82 16 28 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 29 H 0.15 2.16 8.14 -51.92 -0.42 1.74 16 30 H 0.12 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.34 2.85 8.99 -39.29 -0.35 2.49 16 34 H 0.35 2.70 9.08 -39.29 -0.36 2.35 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -33.56 321.89 -9.84 -43.40 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.43 Total: 5.47 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.43 Total: 1.99 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: 0.15 Total: -71.42 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.87 Total: -37.77 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 43.94 SS G_CDS: -0.56 Total: 43.38 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.51 Total: -3.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.56 -9.84 -43.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164286899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.521 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds