Wall clock time and date at job start Fri Apr 10 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38544 * 119.99828 * 2 1 4 4 C 1.40039 * 120.44840 * 0.02562 * 3 2 1 5 5 C 1.38799 * 118.59110 * 179.97438 * 4 3 2 6 6 Cl 1.73608 * 120.33782 * 179.97438 * 5 4 3 7 7 N 1.32203 * 119.32864 * 359.97438 * 5 4 3 8 8 C 1.33426 * 120.85871 * 0.02562 * 7 5 4 9 9 C 1.41576 * 119.23781 * 180.26978 * 8 7 5 10 10 H 1.07997 * 119.99541 * 173.27201 * 9 8 7 11 11 C 1.40053 * 119.99843 * 353.28390 * 9 8 7 12 12 N 1.30692 * 120.00053 * 6.23182 * 11 9 8 13 13 Si 1.86801 * 119.99672 * 186.23921 * 11 9 8 14 14 H 1.48501 * 109.46964 * 94.98559 * 13 11 9 15 15 H 1.48499 * 109.46928 * 214.97751 * 13 11 9 16 16 H 1.48494 * 109.47279 * 334.98101 * 13 11 9 17 17 N 1.32562 * 120.44926 * 179.97438 * 3 2 1 18 18 S 1.65601 * 120.00204 * 179.97438 * 2 1 3 19 19 O 1.42098 * 104.27642 * 26.07007 * 18 2 1 20 20 O 1.42091 * 104.27535 * 153.93052 * 18 2 1 21 21 C 1.81401 * 104.45025 * 270.00243 * 18 2 1 22 22 C 1.52993 * 109.47281 * 179.97438 * 21 18 2 23 23 N 1.46895 * 109.47312 * 179.97438 * 22 21 18 24 24 H 1.08999 * 109.47457 * 90.00293 * 1 2 3 25 25 H 1.09006 * 109.47389 * 210.00206 * 1 2 3 26 26 H 1.09004 * 109.47609 * 329.99851 * 1 2 3 27 27 H 1.08007 * 120.70671 * 359.95274 * 4 3 2 28 28 H 0.97006 * 119.99566 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.46721 * 299.99839 * 21 18 2 30 30 H 1.08999 * 109.47182 * 59.99677 * 21 18 2 31 31 H 1.08996 * 109.47161 * 299.99929 * 22 21 18 32 32 H 1.09004 * 109.46729 * 60.00091 * 22 21 18 33 33 H 1.00900 * 110.99934 * 56.05285 * 23 22 21 34 34 H 1.00906 * 111.00537 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1577 1.1998 0.0000 4 6 1.4670 2.4180 0.0005 5 6 2.1995 3.5970 0.0011 6 17 1.3896 5.1326 0.0011 7 7 3.5202 3.5387 0.0016 8 6 4.1535 2.3643 0.0010 9 6 5.5690 2.3419 0.0074 10 1 6.0937 1.4042 0.1167 11 6 6.2888 3.5356 -0.1277 12 7 5.6592 4.6808 -0.1372 13 14 8.1488 3.4908 -0.2946 14 1 8.5176 3.5196 -1.7328 15 1 8.7358 4.6704 0.3905 16 1 8.6717 2.2471 0.3258 17 7 3.4833 1.2103 0.0005 18 16 2.2930 -1.4341 0.0006 19 8 1.3970 -2.3564 -0.6041 20 8 3.5394 -1.1193 -0.6047 21 6 2.5193 -1.8254 1.7574 22 6 3.2808 -3.1455 1.8920 23 7 3.4646 -3.4620 3.3146 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 0.3871 2.4398 0.0002 28 1 6.1578 5.5076 -0.2312 29 1 3.0866 -1.0277 2.2371 30 1 1.5451 -1.9178 2.2375 31 1 2.7132 -3.9429 1.4124 32 1 4.2551 -3.0534 1.4118 33 1 2.5785 -3.4890 3.7964 34 1 3.9652 -4.3305 3.4302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164286899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:07 Heat of formation + Delta-G solvation = -35.178244 kcal Electronic energy + Delta-G solvation = -23005.936348 eV Core-core repulsion = 19319.867284 eV Total energy + Delta-G solvation = -3686.069064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.050 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14785 -38.22714 -37.84347 -37.34172 -36.99336 -36.50125 -35.40582 -33.31262 -31.65611 -30.50303 -28.59033 -27.54927 -24.62296 -23.71956 -23.38533 -20.75295 -19.49752 -18.92571 -18.31983 -17.94710 -17.35131 -16.73678 -16.59414 -16.28605 -16.00793 -15.77903 -15.47426 -15.28927 -14.99261 -14.67512 -14.62893 -13.58445 -13.46520 -13.28251 -13.22230 -13.14635 -13.05904 -12.90364 -12.77509 -12.70382 -12.67672 -12.07937 -12.00258 -11.90124 -11.73457 -11.03216 -10.91549 -10.31116 -9.77874 -9.52377 -9.46034 -8.50375 -6.82083 -0.89636 0.54887 0.85254 1.04761 1.41382 1.44375 1.51515 1.58439 2.20891 2.64262 2.78311 3.13578 3.18134 3.52114 3.66353 3.77058 3.78880 4.17284 4.23182 4.40218 4.44502 4.53332 4.57652 4.68778 4.73625 4.88688 4.98764 5.10546 5.17327 5.73399 6.05913 6.12655 6.39847 6.53539 6.55853 6.95057 8.04789 8.30103 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.005603 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.212873 B = 4996.260513 C = 6790.969254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.918 5.918 3 C 0.423 3.577 4 C -0.372 4.372 5 C 0.243 3.757 6 Cl -0.048 7.048 7 N -0.548 5.548 8 C 0.400 3.600 9 C -0.415 4.415 10 H 0.095 0.905 11 C 0.025 3.975 12 N -0.733 5.733 13 Si 0.997 3.003 14 H -0.263 1.263 15 H -0.259 1.259 16 H -0.255 1.255 17 N -0.618 5.618 18 S 2.604 3.396 19 O -0.972 6.972 20 O -0.947 6.947 21 C -0.604 4.604 22 C 0.068 3.932 23 N -0.847 5.847 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.157 0.843 28 H 0.288 0.712 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.355 0.645 34 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -9.723 5.428 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.745 5.745 3 C 0.177 3.823 4 C -0.405 4.405 5 C 0.063 3.937 6 Cl -0.020 7.020 7 N -0.270 5.270 8 C 0.164 3.836 9 C -0.450 4.450 10 H 0.113 0.887 11 C -0.200 4.200 12 N -0.354 5.354 13 Si 0.816 3.184 14 H -0.188 1.188 15 H -0.183 1.183 16 H -0.178 1.178 17 N -0.346 5.346 18 S 2.701 3.299 19 O -0.962 6.962 20 O -0.937 6.937 21 C -0.737 4.737 22 C -0.065 4.065 23 N -0.382 5.382 24 H 0.091 0.909 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.175 0.825 28 H 0.099 0.901 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.387 -9.222 4.659 12.147 hybrid contribution -1.091 -0.108 0.164 1.108 sum -7.478 -9.330 4.823 12.893 Atomic orbital electron populations 1.22117 0.74540 1.06151 1.04647 1.55265 1.17222 1.18231 1.83807 1.18243 0.88810 0.85766 0.89517 1.21378 1.01418 0.89617 1.28058 1.21967 0.91359 0.86710 0.93695 1.98299 1.76498 1.30686 1.96489 1.68620 1.06629 1.28963 1.22796 1.19869 0.94755 0.80180 0.88747 1.19760 0.88246 0.95777 1.41194 0.88714 1.27051 1.06551 0.93752 0.92653 1.70187 1.39725 0.99183 1.26293 0.84974 0.74182 0.79727 0.79547 1.18805 1.18257 1.17806 1.68609 1.05437 1.31384 1.29138 1.05360 0.73374 0.72304 0.78909 1.93553 1.65740 1.61962 1.74995 1.93692 1.44309 1.81254 1.74411 1.30431 1.11603 1.08003 1.23653 1.21434 0.99957 0.92461 0.92605 1.58570 1.27470 1.42390 1.09740 0.90855 0.87125 0.88043 0.82514 0.90130 0.85032 0.82056 0.92011 0.90402 0.83134 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 9.67 127.77 1.24 2.79 16 2 N -0.92 -31.01 3.29 -366.00 -1.20 -32.22 16 3 C 0.42 18.61 7.31 133.39 0.98 19.59 16 4 C -0.37 -15.58 9.11 22.84 0.21 -15.37 16 5 C 0.24 11.57 7.33 84.77 0.62 12.19 16 6 Cl -0.05 -1.89 29.15 -2.72 -0.08 -1.97 16 7 N -0.55 -30.36 7.89 -185.02 -1.46 -31.82 16 8 C 0.40 22.81 7.36 135.16 0.99 23.81 16 9 C -0.41 -23.13 9.37 23.53 0.22 -22.91 16 10 H 0.09 5.20 7.85 -2.91 -0.02 5.17 16 11 C 0.02 1.26 5.49 85.30 0.47 1.73 16 12 N -0.73 -38.40 11.45 21.84 0.25 -38.15 16 13 Si 1.00 37.88 29.56 68.60 2.03 39.90 16 14 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 15 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 17 N -0.62 -32.45 7.71 -191.54 -1.48 -33.93 16 18 S 2.60 85.85 5.25 -56.49 -0.30 85.56 16 19 O -0.97 -31.88 17.09 -127.65 -2.18 -34.06 16 20 O -0.95 -42.25 15.50 -127.65 -1.98 -44.23 16 21 C -0.60 -14.61 6.44 71.98 0.46 -14.15 16 22 C 0.07 1.48 6.79 86.30 0.59 2.07 16 23 N -0.85 -15.17 9.62 -186.74 -1.80 -16.96 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.11 1.72 7.79 -2.38 -0.02 1.71 16 26 H 0.10 1.99 6.22 -2.38 -0.01 1.98 16 27 H 0.16 5.20 6.25 -2.91 -0.02 5.18 16 28 H 0.29 13.44 8.29 -92.70 -0.77 12.67 16 29 H 0.13 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 33 H 0.35 4.75 8.99 -89.69 -0.81 3.94 16 34 H 0.36 4.78 9.08 -89.69 -0.81 3.97 16 Total: -1.00 -76.01 321.89 -2.86 -78.88 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.44 Total: 19.26 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.77 Total: 9.74 kcal Atomic # 7 Polarization: -147.38 SS G_CDS: -5.69 Total: -153.07 kcal Atomic # 8 Polarization: -74.13 SS G_CDS: -4.16 Total: -78.29 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 85.85 SS G_CDS: -0.30 Total: 85.56 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -76.01 -2.86 -78.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164286899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.698 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds