Wall clock time and date at job start Fri Apr 10 2020 18:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39932 * 125.73324 * 2 1 4 4 C 1.30499 * 108.95306 * 179.76018 * 3 2 1 5 5 Cl 1.73602 * 125.98836 * 180.24457 * 4 3 2 6 6 C 1.41434 * 108.01433 * 0.40644 * 4 3 2 7 7 C 1.47263 * 126.43998 * 179.85466 * 6 4 3 8 8 O 1.21623 * 120.00126 * 269.68932 * 7 6 4 9 9 N 1.34777 * 119.99630 * 89.68619 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46921 * 120.00143 * 18 16 14 21 21 H 1.48498 * 109.46946 * 240.00460 * 18 16 14 22 22 C 1.34319 * 125.73760 * 180.02562 * 2 1 3 23 23 Cl 1.73605 * 126.30555 * 359.95170 * 22 2 1 24 24 H 1.08998 * 109.46468 * 269.97607 * 1 2 3 25 25 H 1.09000 * 109.47324 * 29.97420 * 1 2 3 26 26 H 1.08993 * 109.47151 * 149.97541 * 1 2 3 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 29 29 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 30 30 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 31 31 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 32 32 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 33 33 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 34 34 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 35 35 H 0.97003 * 120.00466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1359 0.0000 4 6 3.5316 0.7591 0.0052 5 17 4.9138 1.8095 0.0133 6 6 3.5621 -0.6549 -0.0008 7 6 4.7654 -1.5038 -0.0010 8 8 5.2621 -1.8546 -1.0543 9 7 5.3163 -1.8921 1.1662 10 6 6.5098 -2.7416 1.1661 11 6 6.9236 -3.0400 2.6086 12 6 8.1696 -3.9278 2.6084 13 7 8.5655 -4.2139 3.9896 14 6 9.6619 -4.9952 4.2398 15 1 10.2351 -5.4001 3.4188 16 6 10.0373 -5.2660 5.5485 17 7 9.3391 -4.7722 6.5489 18 14 11.5327 -6.3323 5.8897 19 1 12.1391 -6.7605 4.6036 20 1 12.5275 -5.5543 6.6708 21 1 11.1203 -7.5293 6.6658 22 6 2.2495 -1.0903 -0.0005 23 17 1.7143 -2.7417 0.0000 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 4.9200 -1.6126 2.0063 28 1 6.2903 -3.6765 0.6503 29 1 7.3225 -2.2264 0.6542 30 1 7.1430 -2.1052 3.1243 31 1 6.1108 -3.5554 3.1205 32 1 7.9498 -4.8625 2.0928 33 1 8.9826 -3.4128 2.0964 34 1 8.0513 -3.8494 4.7269 35 1 9.6016 -4.9610 7.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168149207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:11 Heat of formation + Delta-G solvation = 41.429337 kcal Electronic energy + Delta-G solvation = -21213.170062 eV Core-core repulsion = 17528.379246 eV Total energy + Delta-G solvation = -3684.790816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.02807 -39.37430 -37.62488 -37.23433 -36.00326 -34.32480 -33.91203 -32.04854 -30.97738 -29.45747 -27.70654 -25.35188 -23.39411 -22.24616 -21.95677 -21.19665 -20.42090 -18.45571 -17.15678 -16.84371 -16.61619 -15.94322 -15.83822 -15.53910 -14.98009 -14.62883 -14.04911 -13.87152 -13.81863 -13.39648 -13.26957 -13.04387 -12.97864 -12.44439 -12.32812 -12.06822 -11.93393 -11.64958 -11.20138 -10.94742 -10.91761 -10.79218 -10.60632 -10.18309 -9.98192 -9.86541 -9.70062 -9.28167 -9.06836 -8.87248 -6.92078 -5.76269 -3.04954 0.60539 0.75896 0.95859 1.57282 2.22395 2.35999 3.17623 3.44466 3.50288 3.52518 3.87794 4.48718 4.52510 4.58498 4.59592 4.61816 4.78801 5.11908 5.27255 5.33677 5.58814 5.65213 5.78507 5.99153 6.08612 6.20877 6.34051 6.42640 6.58433 6.81134 6.85354 7.41473 7.71937 8.09520 8.42781 9.54007 10.11383 10.45963 11.46853 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002424 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.227360 B =11547.630482 C =12197.588754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.339 5.339 3 N -0.254 5.254 4 C 0.160 3.840 5 Cl 0.036 6.964 6 C -0.243 4.243 7 C 0.594 3.406 8 O -0.521 6.521 9 N -0.712 5.712 10 C 0.122 3.878 11 C -0.138 4.138 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.166 3.834 23 Cl 0.030 6.970 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.402 0.598 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.276 12.064 -14.215 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.123 5.123 3 N -0.080 5.080 4 C -0.031 4.031 5 Cl 0.064 6.936 6 C -0.260 4.260 7 C 0.376 3.624 8 O -0.397 6.397 9 N -0.363 5.363 10 C -0.001 4.001 11 C -0.176 4.176 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C 0.009 3.991 23 Cl 0.058 6.942 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.237 0.763 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.217 0.783 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.612 12.617 -15.016 29.933 hybrid contribution 0.869 -0.982 0.976 1.635 sum -21.743 11.635 -14.041 28.377 Atomic orbital electron populations 1.22231 0.71883 1.05894 1.04987 1.48307 1.07461 1.01352 1.55158 1.77359 1.00003 1.05284 1.25360 1.22435 0.89985 0.89380 1.01322 1.98454 1.34040 1.64476 1.96605 1.19705 0.92500 0.92464 1.21360 1.16906 0.81996 0.79194 0.84281 1.90826 1.62320 1.55321 1.31197 1.46022 1.30252 1.51975 1.08062 1.21437 0.86141 0.94284 0.98249 1.21952 0.99902 1.01367 0.94402 1.20521 0.92540 0.95313 0.88790 1.42349 1.33404 1.61061 1.01015 1.19293 1.03242 1.22548 0.91841 0.91032 1.24753 0.99537 1.01286 0.95568 1.69667 1.41061 1.49467 0.98137 0.86101 0.82405 0.79827 0.77787 1.20501 1.21861 1.21869 1.21888 0.89745 0.84491 1.02972 1.98475 1.89899 1.09334 1.96483 0.89071 0.87745 0.88427 0.76329 0.91031 0.90958 0.91164 0.91242 0.96015 0.95981 0.78303 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.28 59.85 0.67 1.00 16 2 N -0.34 -2.87 3.98 -64.32 -0.26 -3.13 16 3 N -0.25 -2.72 12.50 33.18 0.41 -2.30 16 4 C 0.16 1.85 7.89 -16.90 -0.13 1.72 16 5 Cl 0.04 0.39 29.19 -51.86 -1.51 -1.12 16 6 C -0.24 -2.90 5.89 -104.99 -0.62 -3.51 16 7 C 0.59 8.11 7.39 -12.59 -0.09 8.02 16 8 O -0.52 -8.92 17.11 5.26 0.09 -8.83 16 9 N -0.71 -8.66 5.55 -61.43 -0.34 -9.00 16 10 C 0.12 1.65 5.67 -4.04 -0.02 1.62 16 11 C -0.14 -2.08 5.44 -26.73 -0.15 -2.23 16 12 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 13 N -0.73 -18.63 5.60 -59.90 -0.34 -18.96 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 C 0.17 1.63 7.53 -16.44 -0.12 1.51 16 23 Cl 0.03 0.25 28.56 -51.86 -1.48 -1.23 16 24 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.10 0.20 7.77 -51.93 -0.40 -0.21 16 27 H 0.40 4.08 8.46 -40.82 -0.35 3.73 16 28 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -34.49 344.44 -7.25 -41.74 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.99 Total: 3.98 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.73 Total: 3.77 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.21 Total: -61.00 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -2.99 Total: -2.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.49 -7.25 -41.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168149207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.170 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds