Wall clock time and date at job start Fri Apr 10 2020 18:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39932 * 125.73324 * 2 1 4 4 C 1.30499 * 108.95306 * 179.76018 * 3 2 1 5 5 Cl 1.73602 * 125.98836 * 180.24457 * 4 3 2 6 6 C 1.41434 * 108.01433 * 0.40644 * 4 3 2 7 7 C 1.47263 * 126.43998 * 179.85466 * 6 4 3 8 8 O 1.21623 * 120.00126 * 269.68932 * 7 6 4 9 9 N 1.34777 * 119.99630 * 89.68619 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46921 * 120.00143 * 18 16 14 21 21 H 1.48498 * 109.46946 * 240.00460 * 18 16 14 22 22 C 1.34319 * 125.73760 * 180.02562 * 2 1 3 23 23 Cl 1.73605 * 126.30555 * 359.95170 * 22 2 1 24 24 H 1.08998 * 109.46468 * 269.97607 * 1 2 3 25 25 H 1.09000 * 109.47324 * 29.97420 * 1 2 3 26 26 H 1.08993 * 109.47151 * 149.97541 * 1 2 3 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 29 29 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 30 30 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 31 31 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 32 32 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 33 33 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 34 34 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 35 35 H 0.97003 * 120.00466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1359 0.0000 4 6 3.5316 0.7591 0.0052 5 17 4.9138 1.8095 0.0133 6 6 3.5621 -0.6549 -0.0008 7 6 4.7654 -1.5038 -0.0010 8 8 5.2621 -1.8546 -1.0543 9 7 5.3163 -1.8921 1.1662 10 6 6.5098 -2.7416 1.1661 11 6 6.9236 -3.0400 2.6086 12 6 8.1696 -3.9278 2.6084 13 7 8.5655 -4.2139 3.9896 14 6 9.6619 -4.9952 4.2398 15 1 10.2351 -5.4001 3.4188 16 6 10.0373 -5.2660 5.5485 17 7 9.3391 -4.7722 6.5489 18 14 11.5327 -6.3323 5.8897 19 1 12.1391 -6.7605 4.6036 20 1 12.5275 -5.5543 6.6708 21 1 11.1203 -7.5293 6.6658 22 6 2.2495 -1.0903 -0.0005 23 17 1.7143 -2.7417 0.0000 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 4.9200 -1.6126 2.0063 28 1 6.2903 -3.6765 0.6503 29 1 7.3225 -2.2264 0.6542 30 1 7.1430 -2.1052 3.1243 31 1 6.1108 -3.5554 3.1205 32 1 7.9498 -4.8625 2.0928 33 1 8.9826 -3.4128 2.0964 34 1 8.0513 -3.8494 4.7269 35 1 9.6016 -4.9610 7.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168149207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:10 Heat of formation + Delta-G solvation = 16.399971 kcal Electronic energy + Delta-G solvation = -21214.255417 eV Core-core repulsion = 17528.379246 eV Total energy + Delta-G solvation = -3685.876171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.79659 -40.45480 -38.35293 -38.03599 -37.48181 -35.89482 -34.56668 -33.73294 -32.04960 -30.95733 -28.35077 -26.91167 -24.83659 -23.54016 -22.67480 -22.55627 -21.46065 -19.45758 -18.95556 -17.80743 -17.48756 -16.97505 -16.85368 -16.51998 -16.32562 -15.96927 -15.31463 -15.28002 -14.96909 -14.64586 -14.38052 -13.81323 -13.76090 -13.71378 -13.29160 -13.07855 -12.83493 -12.82160 -12.62775 -12.57796 -12.40337 -12.05314 -12.02422 -11.98429 -11.78371 -11.23664 -10.93494 -10.58767 -10.16460 -10.07690 -8.99381 -7.94919 -5.23642 -0.11866 0.01256 0.19152 0.71888 1.32238 1.49150 1.49642 1.57348 1.60054 2.17945 2.57789 3.21322 3.39306 3.69447 3.72542 3.79239 4.09725 4.13494 4.29051 4.32388 4.44635 4.52238 4.58926 4.76292 4.77581 4.91918 5.19498 5.27798 5.35723 5.38660 5.51502 5.82847 6.28102 6.41502 7.07113 7.34589 8.09920 8.33329 9.28891 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002424 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.227360 B =11547.630482 C =12197.588754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.326 5.326 3 N -0.264 5.264 4 C 0.151 3.849 5 Cl 0.033 6.967 6 C -0.268 4.268 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.702 5.702 10 C 0.133 3.867 11 C -0.119 4.119 12 C 0.152 3.848 13 N -0.747 5.747 14 C -0.245 4.245 15 H 0.076 0.924 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.172 3.828 23 Cl 0.044 6.956 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.414 0.586 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.375 0.625 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.472 11.952 -14.662 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.109 5.109 3 N -0.091 5.091 4 C -0.040 4.040 5 Cl 0.061 6.939 6 C -0.285 4.285 7 C 0.383 3.617 8 O -0.439 6.439 9 N -0.353 5.353 10 C 0.009 3.991 11 C -0.157 4.157 12 C 0.025 3.975 13 N -0.390 5.390 14 C -0.377 4.377 15 H 0.093 0.907 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.220 1.220 21 H -0.219 1.219 22 C 0.013 3.987 23 Cl 0.073 6.927 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.250 0.750 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.207 0.793 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.841 12.526 -15.480 31.064 hybrid contribution 1.116 -0.947 1.063 1.809 sum -22.725 11.579 -14.418 29.298 Atomic orbital electron populations 1.22745 0.69048 1.07603 1.06875 1.48716 1.08789 1.00332 1.53100 1.77318 0.99856 1.06333 1.25548 1.22465 0.90295 0.89254 1.01991 1.98445 1.34301 1.64494 1.96649 1.19549 0.92632 0.92463 1.23878 1.17090 0.82148 0.78694 0.83749 1.90800 1.63618 1.56973 1.32519 1.45895 1.29624 1.51308 1.08474 1.21210 0.86577 0.94468 0.96853 1.21710 0.97937 1.00549 0.95536 1.20682 0.94494 0.96279 0.86000 1.42562 1.32800 1.60715 1.02952 1.19683 1.03795 1.22186 0.92063 0.90656 1.25574 1.02597 1.03148 0.95534 1.69809 1.42798 1.51126 0.98255 0.85072 0.78973 0.77867 0.77854 1.19105 1.21985 1.21916 1.21890 0.89423 0.85393 1.01999 1.98483 1.89663 1.08259 1.96344 0.87045 0.86280 0.86555 0.74991 0.91130 0.91356 0.90807 0.90636 0.95761 0.95894 0.79256 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.28 127.77 1.44 1.77 16 2 N -0.33 -4.88 3.98 -357.42 -1.42 -6.31 16 3 N -0.26 -5.31 12.50 -48.94 -0.61 -5.92 16 4 C 0.15 3.38 7.89 85.68 0.68 4.06 16 5 Cl 0.03 0.71 29.19 -2.72 -0.08 0.63 16 6 C -0.27 -6.16 5.89 -20.10 -0.12 -6.28 16 7 C 0.60 16.03 7.39 86.62 0.64 16.67 16 8 O -0.56 -19.15 17.11 -4.10 -0.07 -19.22 16 9 N -0.70 -16.37 5.55 -466.51 -2.59 -18.96 16 10 C 0.13 3.44 5.67 86.38 0.49 3.93 16 11 C -0.12 -3.46 5.44 30.59 0.17 -3.29 16 12 C 0.15 5.91 6.26 86.38 0.54 6.45 16 13 N -0.75 -37.77 5.60 -343.44 -1.92 -39.70 16 14 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 15 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 16 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 17 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 18 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 C 0.17 3.11 7.53 84.33 0.64 3.75 16 23 Cl 0.04 0.66 28.56 -2.72 -0.08 0.58 16 24 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.12 0.11 7.77 -2.39 -0.02 0.10 16 27 H 0.41 7.83 8.46 -92.71 -0.78 7.05 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.38 19.89 7.67 -92.71 -0.71 19.18 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.25 344.44 0.97 -72.28 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.34 Total: 17.01 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.78 Total: 10.20 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -6.27 Total: -129.70 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.07 Total: -19.22 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 17 Polarization: 1.37 SS G_CDS: -0.16 Total: 1.22 kcal Total: -73.25 0.97 -72.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168149207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.680 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds