Wall clock time and date at job start Fri Apr 10 2020 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47007 * 275.57976 * 3 2 1 5 5 H 1.48498 * 109.47235 * 35.57938 * 3 2 1 6 6 H 1.48498 * 109.47013 * 155.58235 * 3 2 1 7 7 C 1.38954 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 33.66947 * 7 2 1 9 9 N 1.37096 * 120.00045 * 213.66393 * 7 2 1 10 10 C 1.46508 * 119.99799 * 40.41873 * 9 7 2 11 11 C 1.50696 * 109.47092 * 96.73134 * 10 9 7 12 12 C 1.38237 * 119.99964 * 95.53896 * 11 10 9 13 13 C 1.38231 * 120.00243 * 179.97438 * 12 11 10 14 14 C 1.38237 * 119.99919 * 0.02578 * 13 12 11 15 15 C 1.38243 * 119.99916 * 0.25301 * 14 13 12 16 16 C 1.38234 * 120.00125 * 275.55628 * 11 10 9 17 17 C 1.34774 * 120.00171 * 220.41259 * 9 7 2 18 18 O 1.21290 * 120.00153 * 179.97438 * 17 9 7 19 19 C 1.50697 * 119.99853 * 0.02562 * 17 9 7 20 20 H 1.08995 * 108.87143 * 318.58877 * 19 17 9 21 21 C 1.52829 * 108.88735 * 77.08513 * 19 17 9 22 22 S 1.82062 * 108.21844 * 172.57392 * 21 19 17 23 23 C 1.81842 * 101.22858 * 298.57583 * 22 21 19 24 24 C 1.50149 * 109.06576 * 44.10681 * 23 22 21 25 25 O 1.21277 * 116.82802 * 159.45286 * 24 23 22 26 26 N 1.31764 * 126.34045 * 339.42605 * 24 23 22 27 27 H 0.96996 * 119.99368 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46939 * 336.72856 * 10 9 7 29 29 H 1.09002 * 109.46714 * 216.73336 * 10 9 7 30 30 H 1.08002 * 119.99968 * 359.97438 * 12 11 10 31 31 H 1.07995 * 120.00203 * 179.97438 * 13 12 11 32 32 H 1.07997 * 120.00205 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.99815 * 179.73124 * 15 14 13 34 34 H 1.07998 * 119.99969 * 0.02562 * 16 11 10 35 35 H 1.09004 * 109.71019 * 292.25326 * 21 19 17 36 36 H 1.08999 * 109.71838 * 52.89180 * 21 19 17 37 37 H 1.09008 * 109.53889 * 284.23057 * 23 22 21 38 38 H 1.08996 * 109.54199 * 163.98405 * 23 22 21 39 39 H 0.97003 * 115.08578 * 186.49413 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3778 2.1144 -1.3934 5 1 1.5096 2.6158 0.8146 6 1 3.5997 1.4089 0.5788 7 6 2.0089 -1.2034 0.0005 8 1 1.6048 -2.0604 -0.5176 9 7 3.2074 -1.3027 0.6587 10 6 3.3828 -0.6579 1.9625 11 6 3.1502 -1.6669 3.0573 12 6 4.2217 -2.3319 3.6234 13 6 4.0085 -3.2571 4.6281 14 6 2.7236 -3.5178 5.0663 15 6 1.6515 -2.8570 4.4962 16 6 1.8653 -1.9278 3.4953 17 6 4.2243 -1.9937 0.1065 18 8 5.2848 -2.0811 0.6886 19 6 4.0441 -2.6566 -1.2348 20 1 3.0571 -3.1178 -1.2703 21 6 4.1302 -1.5923 -2.3282 22 16 4.1332 -2.4338 -3.9427 23 6 5.6473 -3.4333 -3.8182 24 6 5.6997 -4.0774 -2.4629 25 8 6.4117 -5.0524 -2.3475 26 7 5.0478 -3.6862 -1.3867 27 1 -0.4849 0.8401 -0.0004 28 1 2.6677 0.1587 2.0630 29 1 4.3965 -0.2648 2.0400 30 1 5.2256 -2.1286 3.2808 31 1 4.8456 -3.7770 5.0701 32 1 2.5569 -4.2410 5.8509 33 1 0.6473 -3.0639 4.8355 34 1 1.0280 -1.4088 3.0525 35 1 3.2695 -0.9267 -2.2621 36 1 5.0494 -1.0183 -2.2111 37 1 6.5190 -2.7925 -3.9513 38 1 5.6393 -4.2046 -4.5883 39 1 5.2761 -4.1611 -0.5723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180551519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:13 Heat of formation + Delta-G solvation = -24.425927 kcal Electronic energy + Delta-G solvation = -25141.836677 eV Core-core repulsion = 21562.207062 eV Total energy + Delta-G solvation = -3579.629615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27272 -39.27457 -38.29143 -35.59602 -34.94059 -32.48362 -31.41868 -30.42300 -30.07867 -29.90724 -26.25313 -25.37552 -23.96334 -22.06917 -21.17999 -20.04371 -19.40617 -18.06352 -17.16560 -16.71257 -16.38644 -15.97267 -15.78385 -15.25506 -15.15401 -14.81643 -14.53378 -14.34770 -14.01847 -13.73418 -13.29675 -13.02391 -12.94761 -12.79432 -12.61926 -12.46253 -12.09702 -11.87414 -11.54086 -11.47353 -11.24158 -11.05855 -10.62278 -10.60362 -10.43391 -10.23154 -9.84961 -9.46085 -9.18940 -8.72557 -8.46112 -8.27306 -8.06861 -7.70470 -6.85502 -4.37074 1.55980 1.74317 1.86732 2.27085 2.75928 2.88339 3.04265 3.09566 3.23464 3.38557 3.88485 3.99204 4.36318 4.50462 4.59878 4.91766 5.05440 5.21018 5.29560 5.30794 5.36879 5.41176 5.59515 5.62756 5.81485 5.91959 5.98306 6.00198 6.10770 6.26129 6.44422 6.53781 6.80793 6.89452 6.92624 7.00812 7.18788 7.45978 7.53689 7.74033 7.94895 8.21318 8.62981 8.99143 9.34368 10.23207 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.005863 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.858675 B = 4774.733267 C = 6504.583968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.088 3.912 3 Si 0.842 3.158 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.376 4.376 8 H 0.105 0.895 9 N -0.437 5.437 10 C 0.152 3.848 11 C -0.091 4.091 12 C -0.097 4.097 13 C -0.134 4.134 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.089 4.089 17 C 0.467 3.533 18 O -0.582 6.582 19 C 0.142 3.858 20 H 0.112 0.888 21 C -0.080 4.080 22 S -0.235 6.235 23 C -0.105 4.105 24 C 0.525 3.475 25 O -0.561 6.561 26 N -0.687 5.687 27 H 0.279 0.721 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -0.822 0.875 3.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.124 4.124 3 Si 0.666 3.334 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.502 4.502 8 H 0.122 0.878 9 N -0.156 5.156 10 C 0.029 3.971 11 C -0.092 4.092 12 C -0.116 4.116 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.107 4.107 17 C 0.253 3.747 18 O -0.467 6.467 19 C 0.032 3.968 20 H 0.130 0.870 21 C -0.229 4.229 22 S -0.008 6.008 23 C -0.256 4.256 24 C 0.310 3.690 25 O -0.442 6.442 26 N -0.337 5.337 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.165 0.835 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.140 -0.999 0.083 3.296 hybrid contribution 0.911 0.810 1.183 1.698 sum 4.051 -0.189 1.266 4.249 Atomic orbital electron populations 1.69958 1.06790 1.28942 1.39550 1.25293 0.94558 0.98458 0.94130 0.87398 0.82212 0.84234 0.79603 1.19608 1.20306 1.17842 1.18949 0.95801 0.98627 1.36778 0.87779 1.43578 1.11293 1.46710 1.14010 1.20594 1.01420 0.93146 0.81926 1.20294 0.93323 0.98966 0.96608 1.21194 0.99227 0.95735 0.95427 1.21048 0.96717 0.99094 0.98324 1.21046 0.93054 1.00134 1.00338 1.21089 0.98485 0.97606 0.97711 1.21203 0.96979 0.97181 0.95383 1.20280 0.83701 0.84087 0.86605 1.90590 1.26808 1.64960 1.64302 1.20604 0.92932 0.88856 0.94369 0.87004 1.23650 1.08711 0.99474 0.91065 1.87222 1.32699 1.55918 1.24957 1.23560 1.00764 1.02956 0.98269 1.19185 0.79606 0.84491 0.85731 1.90777 1.41193 1.27061 1.85124 1.44728 1.40532 1.36623 1.11857 0.91037 0.90378 0.90859 0.85791 0.86813 0.86926 0.86616 0.85342 0.83529 0.89065 0.86410 0.84524 0.75798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.41 13.96 55.50 0.77 -18.63 16 2 C 0.09 1.96 4.95 -17.46 -0.09 1.87 16 3 Si 0.84 17.02 26.45 -169.99 -4.50 12.52 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.25 -5.11 6.15 56.52 0.35 -4.77 16 7 C -0.38 -8.12 7.72 -14.93 -0.12 -8.23 16 8 H 0.10 2.39 6.83 -52.49 -0.36 2.03 16 9 N -0.44 -8.91 2.09 -116.09 -0.24 -9.15 16 10 C 0.15 2.98 3.74 -5.19 -0.02 2.96 16 11 C -0.09 -1.69 5.40 -104.63 -0.56 -2.25 16 12 C -0.10 -1.70 9.31 -39.58 -0.37 -2.07 16 13 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 14 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 15 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 16 C -0.09 -1.59 9.72 -39.58 -0.38 -1.97 16 17 C 0.47 9.27 6.67 -10.99 -0.07 9.19 16 18 O -0.58 -12.53 15.03 5.55 0.08 -12.45 16 19 C 0.14 2.46 2.68 -70.19 -0.19 2.27 16 20 H 0.11 1.98 6.72 -51.93 -0.35 1.63 16 21 C -0.08 -1.27 5.75 37.07 0.21 -1.06 16 22 S -0.24 -3.38 22.40 -107.50 -2.41 -5.79 16 23 C -0.10 -1.39 6.61 35.74 0.24 -1.15 16 24 C 0.53 8.75 7.65 -12.57 -0.10 8.66 16 25 O -0.56 -10.96 17.60 5.56 0.10 -10.86 16 26 N -0.69 -11.72 4.64 -57.16 -0.27 -11.99 16 27 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 28 H 0.08 1.54 5.08 -51.93 -0.26 1.28 16 29 H 0.07 1.44 7.54 -51.93 -0.39 1.04 16 30 H 0.12 2.21 7.58 -52.49 -0.40 1.81 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.15 2.46 7.08 -51.93 -0.37 2.09 16 36 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 37 H 0.12 1.36 8.14 -51.92 -0.42 0.94 16 38 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.41 7.26 7.86 -40.82 -0.32 6.94 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -25.87 336.51 -8.62 -34.50 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -4.60 Total: 15.72 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.64 Total: 1.06 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.27 Total: -39.77 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -4.50 Total: 12.52 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.41 Total: -5.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.87 -8.62 -34.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180551519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.069 kcal (2) G-P(sol) polarization free energy of solvation -25.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds