Wall clock time and date at job start Fri Apr 10 2020 18:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47007 * 275.57976 * 3 2 1 5 5 H 1.48498 * 109.47235 * 35.57938 * 3 2 1 6 6 H 1.48498 * 109.47013 * 155.58235 * 3 2 1 7 7 C 1.38954 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 33.66947 * 7 2 1 9 9 N 1.37096 * 120.00045 * 213.66393 * 7 2 1 10 10 C 1.46508 * 119.99799 * 40.41873 * 9 7 2 11 11 C 1.50696 * 109.47092 * 96.73134 * 10 9 7 12 12 C 1.38237 * 119.99964 * 95.53896 * 11 10 9 13 13 C 1.38231 * 120.00243 * 179.97438 * 12 11 10 14 14 C 1.38237 * 119.99919 * 0.02578 * 13 12 11 15 15 C 1.38243 * 119.99916 * 0.25301 * 14 13 12 16 16 C 1.38234 * 120.00125 * 275.55628 * 11 10 9 17 17 C 1.34774 * 120.00171 * 220.41259 * 9 7 2 18 18 O 1.21290 * 120.00153 * 179.97438 * 17 9 7 19 19 C 1.50697 * 119.99853 * 0.02562 * 17 9 7 20 20 H 1.08995 * 108.87143 * 318.58877 * 19 17 9 21 21 C 1.52829 * 108.88735 * 77.08513 * 19 17 9 22 22 S 1.82062 * 108.21844 * 172.57392 * 21 19 17 23 23 C 1.81842 * 101.22858 * 298.57583 * 22 21 19 24 24 C 1.50149 * 109.06576 * 44.10681 * 23 22 21 25 25 O 1.21277 * 116.82802 * 159.45286 * 24 23 22 26 26 N 1.31764 * 126.34045 * 339.42605 * 24 23 22 27 27 H 0.96996 * 119.99368 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46939 * 336.72856 * 10 9 7 29 29 H 1.09002 * 109.46714 * 216.73336 * 10 9 7 30 30 H 1.08002 * 119.99968 * 359.97438 * 12 11 10 31 31 H 1.07995 * 120.00203 * 179.97438 * 13 12 11 32 32 H 1.07997 * 120.00205 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.99815 * 179.73124 * 15 14 13 34 34 H 1.07998 * 119.99969 * 0.02562 * 16 11 10 35 35 H 1.09004 * 109.71019 * 292.25326 * 21 19 17 36 36 H 1.08999 * 109.71838 * 52.89180 * 21 19 17 37 37 H 1.09008 * 109.53889 * 284.23057 * 23 22 21 38 38 H 1.08996 * 109.54199 * 163.98405 * 23 22 21 39 39 H 0.97003 * 115.08578 * 186.49413 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3778 2.1144 -1.3934 5 1 1.5096 2.6158 0.8146 6 1 3.5997 1.4089 0.5788 7 6 2.0089 -1.2034 0.0005 8 1 1.6048 -2.0604 -0.5176 9 7 3.2074 -1.3027 0.6587 10 6 3.3828 -0.6579 1.9625 11 6 3.1502 -1.6669 3.0573 12 6 4.2217 -2.3319 3.6234 13 6 4.0085 -3.2571 4.6281 14 6 2.7236 -3.5178 5.0663 15 6 1.6515 -2.8570 4.4962 16 6 1.8653 -1.9278 3.4953 17 6 4.2243 -1.9937 0.1065 18 8 5.2848 -2.0811 0.6886 19 6 4.0441 -2.6566 -1.2348 20 1 3.0571 -3.1178 -1.2703 21 6 4.1302 -1.5923 -2.3282 22 16 4.1332 -2.4338 -3.9427 23 6 5.6473 -3.4333 -3.8182 24 6 5.6997 -4.0774 -2.4629 25 8 6.4117 -5.0524 -2.3475 26 7 5.0478 -3.6862 -1.3867 27 1 -0.4849 0.8401 -0.0004 28 1 2.6677 0.1587 2.0630 29 1 4.3965 -0.2648 2.0400 30 1 5.2256 -2.1286 3.2808 31 1 4.8456 -3.7770 5.0701 32 1 2.5569 -4.2410 5.8509 33 1 0.6473 -3.0639 4.8355 34 1 1.0280 -1.4088 3.0525 35 1 3.2695 -0.9267 -2.2621 36 1 5.0494 -1.0183 -2.2111 37 1 6.5190 -2.7925 -3.9513 38 1 5.6393 -4.2046 -4.5883 39 1 5.2761 -4.1611 -0.5723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180551519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:12 Heat of formation + Delta-G solvation = -38.544101 kcal Electronic energy + Delta-G solvation = -25142.448887 eV Core-core repulsion = 21562.207062 eV Total energy + Delta-G solvation = -3580.241825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73666 -40.71195 -39.67280 -37.11935 -36.51088 -34.16813 -32.84529 -31.70890 -31.42869 -31.08650 -27.70943 -27.03684 -25.39715 -23.36754 -22.52383 -21.47748 -20.91769 -19.58624 -18.60779 -18.16155 -17.76200 -17.37183 -17.15504 -16.78840 -16.48038 -16.18922 -15.92361 -15.81730 -15.48143 -15.13717 -14.73380 -14.44650 -14.31568 -14.19729 -13.99248 -13.88202 -13.42750 -13.28118 -13.12318 -12.84953 -12.72920 -12.59797 -12.04327 -11.93969 -11.88909 -11.74754 -11.35134 -10.97180 -10.68758 -10.23210 -9.78029 -9.72669 -9.61521 -8.87082 -8.60519 -6.12346 0.38336 0.44063 0.56801 1.01687 1.24304 1.38528 1.44934 1.47108 1.72963 1.91958 2.20941 2.51793 2.88068 3.03669 3.21018 3.54909 3.86311 3.92435 4.00696 4.05639 4.07177 4.21696 4.34318 4.36059 4.38263 4.53208 4.59958 4.66831 4.76794 4.81686 5.15253 5.23070 5.33246 5.38813 5.62833 5.65252 5.82306 6.04217 6.15736 6.18202 6.22301 6.83923 6.92479 7.31454 7.68118 8.51544 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.005863 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.858675 B = 4774.733267 C = 6504.583968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.065 3.935 3 Si 0.885 3.115 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.442 5.442 10 C 0.151 3.849 11 C -0.109 4.109 12 C -0.111 4.111 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.130 4.130 16 C -0.107 4.107 17 C 0.466 3.534 18 O -0.599 6.599 19 C 0.153 3.847 20 H 0.107 0.893 21 C -0.081 4.081 22 S -0.221 6.221 23 C -0.097 4.097 24 C 0.524 3.476 25 O -0.591 6.591 26 N -0.688 5.688 27 H 0.282 0.718 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -1.463 1.028 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.145 4.145 3 Si 0.708 3.292 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.104 0.896 9 N -0.161 5.161 10 C 0.029 3.971 11 C -0.111 4.111 12 C -0.130 4.130 13 C -0.149 4.149 14 C -0.137 4.137 15 C -0.148 4.148 16 C -0.126 4.126 17 C 0.253 3.747 18 O -0.485 6.485 19 C 0.043 3.957 20 H 0.124 0.876 21 C -0.230 4.230 22 S 0.007 5.993 23 C -0.247 4.247 24 C 0.310 3.690 25 O -0.473 6.473 26 N -0.337 5.337 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.115 0.885 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.811 -1.624 0.224 4.149 hybrid contribution 0.721 0.913 1.198 1.670 sum 4.532 -0.711 1.422 4.803 Atomic orbital electron populations 1.69993 1.07803 1.29623 1.41470 1.25620 0.94736 1.00221 0.93948 0.86728 0.81191 0.81759 0.79504 1.19249 1.20481 1.17899 1.18740 0.95872 0.98011 1.36444 0.89554 1.43626 1.11048 1.46976 1.14408 1.20569 1.00809 0.93532 0.82215 1.20231 0.94139 0.99624 0.97066 1.21202 0.98390 0.96802 0.96577 1.21391 0.98240 0.98071 0.97225 1.21458 0.92120 0.99804 1.00334 1.21393 1.00257 0.96518 0.96635 1.21155 0.96095 0.98519 0.96809 1.20665 0.83223 0.83528 0.87256 1.90574 1.27402 1.65468 1.65009 1.20471 0.92665 0.89064 0.93541 0.87570 1.23545 1.08572 0.99053 0.91879 1.87227 1.33555 1.55657 1.22873 1.23656 1.01103 1.03514 0.96428 1.19775 0.78607 0.84039 0.86584 1.90767 1.42410 1.28454 1.85707 1.44780 1.40505 1.36357 1.12030 0.90753 0.91013 0.91333 0.86763 0.84092 0.83197 0.84235 0.87182 0.84492 0.88535 0.83959 0.82266 0.76581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.20 13.96 21.67 0.30 -40.89 16 2 C 0.06 2.91 4.95 84.93 0.42 3.33 16 3 Si 0.89 35.32 26.45 68.60 1.81 37.13 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.26 -10.12 6.15 99.48 0.61 -9.51 16 7 C -0.36 -16.09 7.72 84.04 0.65 -15.44 16 8 H 0.09 4.09 6.83 -2.91 -0.02 4.07 16 9 N -0.44 -18.34 2.09 -639.59 -1.34 -19.67 16 10 C 0.15 6.09 3.74 85.63 0.32 6.41 16 11 C -0.11 -4.12 5.40 -19.87 -0.11 -4.23 16 12 C -0.11 -3.85 9.31 22.27 0.21 -3.64 16 13 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 14 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 15 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 16 C -0.11 -3.85 9.72 22.27 0.22 -3.63 16 17 C 0.47 18.69 6.67 87.66 0.59 19.27 16 18 O -0.60 -26.00 15.03 -3.06 -0.05 -26.04 16 19 C 0.15 5.27 2.68 44.54 0.12 5.39 16 20 H 0.11 3.81 6.72 -2.39 -0.02 3.79 16 21 C -0.08 -2.53 5.75 71.93 0.41 -2.11 16 22 S -0.22 -5.91 22.40 -56.49 -1.27 -7.18 16 23 C -0.10 -2.31 6.61 71.06 0.47 -1.84 16 24 C 0.52 16.75 7.65 87.95 0.67 17.42 16 25 O -0.59 -22.47 17.60 -3.02 -0.05 -22.52 16 26 N -0.69 -23.16 4.64 -454.78 -2.11 -25.27 16 27 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 28 H 0.07 2.91 5.08 -2.39 -0.01 2.90 16 29 H 0.07 2.76 7.54 -2.39 -0.02 2.74 16 30 H 0.11 4.12 7.58 -2.91 -0.02 4.09 16 31 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.14 4.56 7.08 -2.38 -0.02 4.54 16 36 H 0.10 2.88 8.13 -2.39 -0.02 2.86 16 37 H 0.14 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.40 14.33 7.86 -92.71 -0.73 13.60 16 Total: -1.00 -55.40 336.51 2.22 -53.19 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: 0.27 Total: 40.37 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.64 Total: 10.90 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.14 Total: -85.84 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.10 Total: -48.57 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 1.81 Total: 37.13 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.27 Total: -7.18 kcal Total: -55.40 2.22 -53.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180551519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.643 kcal (2) G-P(sol) polarization free energy of solvation -55.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds