Wall clock time and date at job start Fri Apr 10 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99835 * 2 1 4 4 H 1.48498 * 109.46717 * 95.14817 * 3 2 1 5 5 H 1.48503 * 109.46982 * 215.14580 * 3 2 1 6 6 H 1.48495 * 109.47360 * 335.14647 * 3 2 1 7 7 C 1.38810 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00027 * 32.56345 * 7 2 1 9 9 N 1.36938 * 119.99920 * 212.56361 * 7 2 1 10 10 C 1.46769 * 125.36327 * 355.89203 * 9 7 2 11 11 C 1.53923 * 107.62032 * 178.66435 * 10 9 7 12 12 H 1.09002 * 108.57742 * 101.54004 * 11 10 9 13 13 O 1.40853 * 110.46149 * 221.67459 * 11 10 9 14 14 C 1.41331 * 118.30746 * 68.19006 * 13 11 10 15 15 C 1.51957 * 111.60763 * 56.89345 * 14 13 11 16 16 N 1.44966 * 111.94379 * 319.70161 * 15 14 13 17 17 C 1.34775 * 117.34151 * 203.73170 * 16 15 14 18 18 O 1.21544 * 120.00154 * 179.69624 * 17 16 15 19 19 C 1.47936 * 119.99632 * 359.70072 * 17 16 15 20 20 C 1.39982 * 120.11279 * 172.74742 * 19 17 16 21 21 C 1.38419 * 117.96680 * 179.97438 * 20 19 17 22 22 C 1.39345 * 118.03685 * 359.97438 * 21 20 19 23 23 O 1.35522 * 120.02758 * 180.02562 * 22 21 20 24 24 N 1.32677 * 119.94476 * 0.02562 * 22 21 20 25 25 N 1.28356 * 122.19507 * 359.73285 * 24 22 21 26 26 C 1.44546 * 125.32055 * 23.74629 * 16 15 14 27 27 H 1.09003 * 109.64424 * 105.97490 * 26 16 15 28 28 C 1.46874 * 125.35693 * 176.19692 * 9 7 2 29 29 H 0.96998 * 120.00242 * 174.97812 * 1 2 3 30 30 H 1.09002 * 109.82434 * 298.33663 * 10 9 7 31 31 H 1.08998 * 109.82123 * 59.28826 * 10 9 7 32 32 H 1.09004 * 109.04834 * 296.34806 * 14 13 11 33 33 H 1.09000 * 108.99375 * 177.40600 * 14 13 11 34 34 H 1.08995 * 108.98953 * 199.06068 * 15 14 13 35 35 H 1.09002 * 108.98838 * 80.32811 * 15 14 13 36 36 H 1.07992 * 121.01666 * 359.94834 * 20 19 17 37 37 H 1.08004 * 120.98064 * 180.02562 * 21 20 19 38 38 H 0.96698 * 113.99530 * 90.00130 * 23 22 21 39 39 H 1.08994 * 110.06964 * 317.02666 * 28 9 7 40 40 H 1.08996 * 110.06597 * 78.55789 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6064 1.9836 1.3944 5 1 3.4891 1.4741 -0.8060 6 1 1.3975 2.6817 -0.5884 7 6 2.0103 -1.2021 -0.0005 8 1 1.5976 -2.0637 -0.5043 9 7 3.2182 -1.2956 0.6377 10 6 3.9261 -0.1837 1.2832 11 6 5.2191 -0.7488 1.8980 12 1 6.0532 -0.5001 1.2418 13 8 5.4414 -0.1938 3.1734 14 6 4.5559 -0.5408 4.2188 15 6 4.4972 -2.0450 4.4263 16 7 4.4981 -2.7658 3.1685 17 6 3.9712 -4.0063 3.1656 18 8 3.9420 -4.6518 2.1362 19 6 3.4281 -4.5821 4.4154 20 6 2.7452 -5.8037 4.3871 21 6 2.2561 -6.3018 5.5824 22 6 2.4738 -5.5576 6.7401 23 8 2.0129 -6.0077 7.9324 24 7 3.1327 -4.4078 6.6742 25 7 3.5916 -3.9450 5.5685 26 6 5.0183 -2.2626 1.9174 27 1 5.9643 -2.7540 1.6897 28 6 4.0123 -2.5231 0.7787 29 1 -0.4850 -0.8368 -0.0735 30 1 4.1686 0.5793 0.5435 31 1 3.3030 0.2454 2.0679 32 1 3.5580 -0.1759 3.9756 33 1 4.8929 -0.0673 5.1410 34 1 3.5890 -2.2920 4.9760 35 1 5.3612 -2.3560 5.0137 36 1 2.6038 -6.3409 3.4610 37 1 1.7223 -7.2401 5.6168 38 1 2.6403 -6.5668 8.4108 39 1 3.3640 -3.3604 1.0367 40 1 4.5439 -2.7331 -0.1494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082988532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:15 Heat of formation + Delta-G solvation = -2.299673 kcal Electronic energy + Delta-G solvation = -28187.838883 eV Core-core repulsion = 24198.708614 eV Total energy + Delta-G solvation = -3989.130269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.85526 -41.86527 -39.96737 -38.69002 -37.82399 -36.44619 -34.66663 -34.39007 -32.90924 -31.93882 -29.73117 -29.59381 -26.75791 -26.01656 -25.59892 -24.76703 -22.95670 -22.17775 -20.73617 -20.22110 -19.51030 -19.33084 -18.72252 -18.33210 -17.54588 -17.30636 -17.06266 -16.60092 -16.33995 -16.06255 -15.90232 -15.41176 -15.33194 -15.10218 -14.78968 -14.64487 -14.54649 -14.11674 -13.72231 -13.57246 -13.31686 -13.16875 -13.03949 -12.66299 -12.32155 -12.18319 -12.00410 -11.73685 -11.47836 -11.43410 -11.15796 -10.92773 -10.72982 -10.53463 -10.40285 -9.72179 -9.15503 -8.76874 -5.41252 -0.85313 -0.46632 1.29850 1.36216 1.46280 1.55116 1.65112 2.12870 2.31812 2.46837 2.58266 2.74095 2.92158 3.14131 3.37631 3.43539 3.48941 3.54254 3.64905 3.79620 3.85206 3.98839 4.11694 4.16063 4.35429 4.39175 4.46630 4.65186 4.67197 4.76110 4.80878 4.88969 4.91616 4.95026 5.02113 5.45918 5.56682 5.95020 6.03104 6.23559 6.44005 6.73522 6.79892 7.25832 7.44558 8.07512 8.75778 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.004425 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.426830 B = 6325.457480 C = 6724.284278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.070 4.070 3 Si 1.103 2.897 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.302 1.302 7 C -0.331 4.331 8 H 0.044 0.956 9 N -0.622 5.622 10 C 0.071 3.929 11 C 0.101 3.899 12 H 0.154 0.846 13 O -0.363 6.363 14 C 0.048 3.952 15 C 0.077 3.923 16 N -0.570 5.570 17 C 0.561 3.439 18 O -0.543 6.543 19 C -0.003 4.003 20 C -0.051 4.051 21 C -0.117 4.117 22 C 0.282 3.718 23 O -0.474 6.474 24 N -0.289 5.289 25 N -0.186 5.186 26 C 0.116 3.884 27 H 0.113 0.887 28 C 0.111 3.889 29 H 0.248 0.752 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.149 0.851 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.205 0.795 38 H 0.434 0.566 39 H 0.065 0.935 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -12.579 16.682 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.265 4.265 3 Si 0.930 3.070 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.230 1.230 7 C -0.459 4.459 8 H 0.062 0.938 9 N -0.350 5.350 10 C -0.054 4.054 11 C 0.042 3.958 12 H 0.171 0.829 13 O -0.280 6.280 14 C -0.028 4.028 15 C -0.046 4.046 16 N -0.301 5.301 17 C 0.347 3.653 18 O -0.420 6.420 19 C -0.149 4.149 20 C -0.079 4.079 21 C -0.147 4.147 22 C 0.097 3.903 23 O -0.284 6.284 24 N -0.142 5.142 25 N -0.036 5.036 26 C 0.011 3.989 27 H 0.131 0.869 28 C -0.014 4.014 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.167 0.833 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.193 0.807 37 H 0.222 0.778 38 H 0.298 0.702 39 H 0.083 0.917 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.331 -9.607 16.931 23.043 hybrid contribution -1.066 -3.317 -1.222 3.693 sum 11.265 -12.924 15.709 23.253 Atomic orbital electron populations 1.71042 1.07132 1.29263 1.50998 1.26907 0.95980 1.04245 0.99344 0.83382 0.73611 0.72349 0.77651 1.20019 1.19534 1.23006 1.19775 0.94947 0.97842 1.33347 0.93823 1.44582 1.21054 1.04809 1.64603 1.22446 0.94208 0.92443 0.96295 1.22524 0.98080 0.89593 0.85595 0.82882 1.86926 1.54084 1.69857 1.17117 1.22684 0.94070 0.94118 0.91975 1.22495 1.05999 0.92501 0.83612 1.46713 1.58237 1.14864 1.10271 1.17961 0.78299 0.82040 0.86981 1.90720 1.57860 1.61217 1.32247 1.22735 1.01397 0.96317 0.94468 1.22581 0.91174 0.92657 1.01481 1.22928 0.98683 1.02855 0.90197 1.21173 0.90100 0.90491 0.88505 1.84717 1.43721 1.70464 1.29510 1.73036 1.09433 1.12886 1.18851 1.73706 1.12819 1.22890 0.94176 1.21702 0.97764 0.96206 0.83221 0.86937 1.22094 0.93728 0.90317 0.95250 0.94228 0.93967 0.95435 0.95236 0.83317 0.87071 0.88395 0.80702 0.77788 0.70225 0.91701 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.95 13.70 21.65 0.30 -61.65 16 2 C -0.07 -4.29 5.43 84.86 0.46 -3.82 16 3 Si 1.10 55.39 24.65 68.60 1.69 57.08 16 4 H -0.27 -12.85 6.37 99.48 0.63 -12.22 16 5 H -0.27 -12.38 6.43 99.48 0.64 -11.74 16 6 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 7 C -0.33 -20.21 10.39 84.03 0.87 -19.34 16 8 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 9 N -0.62 -32.00 3.37 -696.32 -2.35 -34.35 16 10 C 0.07 3.14 4.49 86.64 0.39 3.53 16 11 C 0.10 3.37 3.82 30.81 0.12 3.49 16 12 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 13 O -0.36 -11.07 10.25 -146.20 -1.50 -12.57 16 14 C 0.05 1.34 6.72 71.64 0.48 1.82 16 15 C 0.08 2.11 5.06 86.32 0.44 2.55 16 16 N -0.57 -18.64 3.09 -809.72 -2.50 -21.14 16 17 C 0.56 18.74 7.08 86.81 0.61 19.36 16 18 O -0.54 -20.55 13.40 -3.85 -0.05 -20.61 16 19 C 0.00 -0.08 6.61 42.00 0.28 0.19 16 20 C -0.05 -1.03 9.71 22.74 0.22 -0.81 16 21 C -0.12 -1.64 10.14 22.58 0.23 -1.41 16 22 C 0.28 4.85 7.85 84.83 0.67 5.51 16 23 O -0.47 -5.55 13.56 -88.25 -1.20 -6.75 16 24 N -0.29 -6.82 11.54 -170.01 -1.96 -8.78 16 25 N -0.19 -4.87 6.99 -48.50 -0.34 -5.21 16 26 C 0.12 3.94 3.39 45.66 0.15 4.10 16 27 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 28 C 0.11 4.87 6.29 86.70 0.55 5.41 16 29 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 30 H 0.04 1.89 4.48 -2.39 -0.01 1.88 16 31 H 0.03 1.34 5.15 -2.39 -0.01 1.33 16 32 H 0.03 0.99 6.84 -2.39 -0.02 0.98 16 33 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.11 3.26 5.09 -20.91 -0.11 3.15 16 35 H 0.10 2.27 8.00 -2.39 -0.02 2.25 16 36 H 0.18 3.25 7.73 -2.91 -0.02 3.23 16 37 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.43 0.05 9.06 -74.06 -0.67 -0.62 16 39 H 0.07 3.16 4.89 -3.79 -0.02 3.14 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -82.92 316.12 -2.27 -85.18 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.17 Total: 8.20 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 5.47 Total: 20.58 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -6.85 Total: -131.13 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -2.75 Total: -39.92 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 1.69 Total: 57.08 kcal Total: -82.92 -2.27 -85.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082988532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.884 kcal (2) G-P(sol) polarization free energy of solvation -82.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds