Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48500 * 109.46891 * 239.99473 * 3 2 1 5 5 H 1.48494 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46960 * 119.99564 * 3 2 1 7 7 C 1.38819 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.46782 * 125.36235 * 359.97438 * 9 7 2 11 11 C 1.53912 * 107.62391 * 178.80422 * 10 9 7 12 12 H 1.09003 * 109.52064 * 101.56971 * 11 10 9 13 13 O 1.40854 * 110.30564 * 221.40516 * 11 10 9 14 14 C 1.41317 * 118.30917 * 68.01110 * 13 11 10 15 15 C 1.51963 * 111.60738 * 56.89032 * 14 13 11 16 16 N 1.44964 * 111.94092 * 319.69783 * 15 14 13 17 17 C 1.34767 * 117.33785 * 203.73509 * 16 15 14 18 18 O 1.21526 * 120.00098 * 176.78609 * 17 16 15 19 19 C 1.48152 * 120.00524 * 356.78714 * 17 16 15 20 20 C 1.39900 * 121.11655 * 318.60612 * 19 17 16 21 21 N 1.31762 * 119.78427 * 179.97438 * 20 19 17 22 22 N 1.28275 * 122.41843 * 0.02562 * 21 20 19 23 23 C 1.32275 * 122.44102 * 359.97438 * 22 21 20 24 24 O 1.35695 * 120.08366 * 180.02562 * 23 22 21 25 25 C 1.39240 * 119.83351 * 359.72819 * 23 22 21 26 26 C 1.44545 * 125.32115 * 23.75474 * 16 15 14 27 27 H 1.08996 * 109.30278 * 106.18102 * 26 16 15 28 28 C 1.46866 * 125.36319 * 179.97438 * 9 7 2 29 29 H 0.97008 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.82469 * 59.27660 * 10 9 7 31 31 H 1.08996 * 109.82068 * 298.33312 * 10 9 7 32 32 H 1.09006 * 109.05595 * 296.34617 * 14 13 11 33 33 H 1.08998 * 109.05574 * 177.44102 * 14 13 11 34 34 H 1.08993 * 108.98782 * 199.06232 * 15 14 13 35 35 H 1.09006 * 108.98423 * 80.32712 * 15 14 13 36 36 H 1.07994 * 120.11102 * 0.02562 * 20 19 17 37 37 H 0.96704 * 113.99882 * 90.00400 * 24 23 22 38 38 H 1.07998 * 121.11983 * 180.30490 * 25 23 22 39 39 H 1.08996 * 110.06747 * 317.04101 * 28 9 7 40 40 H 1.09004 * 110.06268 * 78.50502 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6961 -1.2124 5 1 1.2855 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1360 -2.5252 0.0005 11 6 -0.4630 -4.0288 -0.0301 12 1 -0.7398 -4.3618 0.9703 13 8 -1.5368 -4.2778 -0.9070 14 6 -1.3296 -4.0855 -2.2917 15 6 -0.1718 -4.9245 -2.8061 16 7 0.9379 -4.9460 -1.8735 17 6 2.1610 -5.2117 -2.3731 18 8 3.1338 -5.1843 -1.6451 19 6 2.3200 -5.5373 -3.8096 20 6 1.4111 -6.3740 -4.4661 21 7 1.5774 -6.6457 -5.7447 22 7 2.5531 -6.1694 -6.4277 23 6 3.4650 -5.3697 -5.9000 24 8 4.4774 -4.8927 -6.6673 25 6 3.3799 -5.0135 -4.5566 26 6 0.8393 -4.7060 -0.4516 27 1 0.9505 -5.6501 0.0817 28 6 1.9375 -3.7231 0.0005 29 1 -0.4850 0.8402 -0.0004 30 1 -0.5530 -2.0381 -0.8809 31 1 -0.5494 -2.0752 0.9031 32 1 -1.1159 -3.0327 -2.4767 33 1 -2.2365 -4.3629 -2.8290 34 1 0.1706 -4.5124 -3.7553 35 1 -0.5182 -5.9452 -2.9686 36 1 0.5755 -6.7952 -3.9271 37 1 4.2786 -4.0525 -7.1028 38 1 4.1102 -4.3581 -4.1056 39 1 2.7745 -3.7508 -0.6971 40 1 2.2789 -3.9780 1.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083113835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = 14.013235 kcal Electronic energy + Delta-G solvation = -28112.477440 eV Core-core repulsion = 24124.054552 eV Total energy + Delta-G solvation = -3988.422888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82486 -40.70015 -38.60614 -37.90510 -36.06640 -35.21191 -33.59929 -32.39365 -31.67778 -30.15658 -28.21364 -27.75599 -25.62955 -24.96533 -24.46752 -23.39787 -21.63526 -20.43053 -19.36270 -18.74418 -18.47179 -17.48800 -17.05843 -16.79380 -16.61172 -16.30013 -15.64697 -15.47391 -14.81005 -14.79957 -14.47656 -14.25903 -14.08504 -13.84390 -13.46960 -12.94156 -12.67971 -12.55531 -12.27529 -12.09439 -11.67649 -11.59141 -11.16709 -11.08144 -10.78738 -10.72740 -10.69572 -10.56516 -10.20574 -10.10588 -10.00662 -9.81030 -9.53414 -9.05782 -8.68038 -8.47660 -6.89723 -5.79626 -3.13083 0.06719 0.40675 2.38703 2.62409 2.97209 3.25908 3.34640 3.39610 3.40518 3.80856 3.91139 3.99302 4.14441 4.42379 4.52146 4.62467 4.67550 4.90242 4.95567 5.10211 5.21118 5.27046 5.42663 5.47112 5.54720 5.57922 5.59684 5.71301 5.84880 5.93662 6.13539 6.29516 6.66391 6.94526 6.95457 7.14707 7.30803 7.43399 7.62813 7.76864 7.95294 8.17199 8.25867 9.13609 9.73760 10.36400 11.31558 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.004739 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.578292 B = 5907.421686 C = 7047.802229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.151 3.849 11 C 0.069 3.931 12 H 0.114 0.886 13 O -0.368 6.368 14 C 0.058 3.942 15 C 0.072 3.928 16 N -0.570 5.570 17 C 0.552 3.448 18 O -0.502 6.502 19 C -0.102 4.102 20 C 0.053 3.947 21 N -0.214 5.214 22 N -0.250 5.250 23 C 0.261 3.739 24 O -0.471 6.471 25 C -0.082 4.082 26 C 0.109 3.891 27 H 0.078 0.922 28 C 0.109 3.891 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.186 0.814 37 H 0.409 0.591 38 H 0.166 0.834 39 H 0.085 0.915 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -10.963 -8.959 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.010 3.990 12 H 0.131 0.869 13 O -0.285 6.285 14 C -0.019 4.019 15 C -0.052 4.052 16 N -0.303 5.303 17 C 0.338 3.662 18 O -0.377 6.377 19 C -0.116 4.116 20 C -0.113 4.113 21 N -0.057 5.057 22 N -0.102 5.102 23 C 0.075 3.925 24 O -0.277 6.277 25 C -0.113 4.113 26 C 0.005 3.995 27 H 0.096 0.904 28 C -0.017 4.017 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.203 0.797 37 H 0.268 0.732 38 H 0.184 0.816 39 H 0.102 0.898 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.568 -11.990 -9.643 15.397 hybrid contribution 1.033 2.239 0.969 2.649 sum 0.465 -9.751 -8.673 13.059 Atomic orbital electron populations 1.69934 1.04834 1.25234 1.57109 1.24793 0.95740 0.97667 1.02170 0.86187 0.78453 0.83092 0.77965 1.21274 1.21545 1.21045 1.19006 0.90456 0.82181 1.43774 0.90414 1.44235 1.01087 1.00208 1.87369 1.21702 0.85237 0.88048 1.02418 1.23021 0.84512 0.98684 0.92766 0.86878 1.86909 1.37139 1.88906 1.15518 1.22236 0.97052 0.99695 0.82963 1.21990 0.88969 1.01304 0.92926 1.46500 1.06756 1.68516 1.08512 1.18002 0.83672 0.78556 0.85995 1.90752 1.38576 1.49537 1.58845 1.21295 0.95900 0.98384 0.96039 1.24892 0.98681 0.94710 0.92971 1.73077 1.11391 1.15680 1.05593 1.72764 0.98648 1.07447 1.31359 1.20730 0.88655 0.94340 0.88794 1.84805 1.33959 1.43629 1.65259 1.22762 0.96864 0.97932 0.93745 1.21852 0.99397 0.99485 0.78795 0.90393 1.22100 0.95635 0.84638 0.99324 0.93633 0.92567 0.92876 0.91814 0.87535 0.90211 0.90979 0.79706 0.73217 0.81606 0.89795 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.26 55.49 0.57 -25.69 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.18 10.25 -15.06 -0.15 -6.34 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -14.90 3.39 -171.44 -0.58 -15.48 16 10 C 0.15 3.48 5.02 -3.41 -0.02 3.47 16 11 C 0.07 1.23 3.83 -26.40 -0.10 1.13 16 12 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 13 O -0.37 -5.95 10.24 -34.45 -0.35 -6.31 16 14 C 0.06 0.78 6.72 36.63 0.25 1.02 16 15 C 0.07 0.84 4.90 -5.39 -0.03 0.82 16 16 N -0.57 -8.54 3.09 -169.82 -0.52 -9.06 16 17 C 0.55 8.44 6.86 -12.19 -0.08 8.36 16 18 O -0.50 -9.19 13.84 5.34 0.07 -9.12 16 19 C -0.10 -1.27 4.88 -104.60 -0.51 -1.78 16 20 C 0.05 0.57 9.09 -16.96 -0.15 0.42 16 21 N -0.21 -2.65 11.48 30.79 0.35 -2.30 16 22 N -0.25 -3.24 11.50 30.49 0.35 -2.89 16 23 C 0.26 3.00 7.85 -16.99 -0.13 2.87 16 24 O -0.47 -4.44 13.57 -18.79 -0.26 -4.69 16 25 C -0.08 -0.98 9.85 -38.61 -0.38 -1.36 16 26 C 0.11 1.85 3.41 -68.51 -0.23 1.62 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.11 2.29 6.30 -3.23 -0.02 2.26 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.43 5.74 -51.93 -0.30 1.14 16 31 H 0.05 1.37 7.49 -51.93 -0.39 0.98 16 32 H 0.06 1.02 6.82 -51.93 -0.35 0.67 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.87 6.28 -51.93 -0.33 0.54 16 35 H 0.07 0.63 6.29 -51.93 -0.33 0.30 16 36 H 0.19 1.50 5.66 -52.49 -0.30 1.20 16 37 H 0.41 1.73 9.06 45.56 0.41 2.14 16 38 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.08 1.87 4.78 -52.57 -0.25 1.62 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -33.80 321.58 -5.70 -39.50 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.49 Total: 2.30 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -1.66 Total: 12.17 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.17 Total: -55.42 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.53 Total: -20.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.80 -5.70 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083113835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.512 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds