Wall clock time and date at job start Fri Apr 10 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48500 * 109.46891 * 239.99473 * 3 2 1 5 5 H 1.48494 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46960 * 119.99564 * 3 2 1 7 7 C 1.38819 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.46782 * 125.36235 * 359.97438 * 9 7 2 11 11 C 1.53912 * 107.62391 * 178.80422 * 10 9 7 12 12 H 1.09003 * 109.52064 * 101.56971 * 11 10 9 13 13 O 1.40854 * 110.30564 * 221.40516 * 11 10 9 14 14 C 1.41317 * 118.30917 * 68.01110 * 13 11 10 15 15 C 1.51963 * 111.60738 * 56.89032 * 14 13 11 16 16 N 1.44964 * 111.94092 * 319.69783 * 15 14 13 17 17 C 1.34767 * 117.33785 * 203.73509 * 16 15 14 18 18 O 1.21526 * 120.00098 * 176.78609 * 17 16 15 19 19 C 1.48152 * 120.00524 * 356.78714 * 17 16 15 20 20 C 1.39900 * 121.11655 * 318.60612 * 19 17 16 21 21 N 1.31762 * 119.78427 * 179.97438 * 20 19 17 22 22 N 1.28275 * 122.41843 * 0.02562 * 21 20 19 23 23 C 1.32275 * 122.44102 * 359.97438 * 22 21 20 24 24 O 1.35695 * 120.08366 * 180.02562 * 23 22 21 25 25 C 1.39240 * 119.83351 * 359.72819 * 23 22 21 26 26 C 1.44545 * 125.32115 * 23.75474 * 16 15 14 27 27 H 1.08996 * 109.30278 * 106.18102 * 26 16 15 28 28 C 1.46866 * 125.36319 * 179.97438 * 9 7 2 29 29 H 0.97008 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.82469 * 59.27660 * 10 9 7 31 31 H 1.08996 * 109.82068 * 298.33312 * 10 9 7 32 32 H 1.09006 * 109.05595 * 296.34617 * 14 13 11 33 33 H 1.08998 * 109.05574 * 177.44102 * 14 13 11 34 34 H 1.08993 * 108.98782 * 199.06232 * 15 14 13 35 35 H 1.09006 * 108.98423 * 80.32712 * 15 14 13 36 36 H 1.07994 * 120.11102 * 0.02562 * 20 19 17 37 37 H 0.96704 * 113.99882 * 90.00400 * 24 23 22 38 38 H 1.07998 * 121.11983 * 180.30490 * 25 23 22 39 39 H 1.08996 * 110.06747 * 317.04101 * 28 9 7 40 40 H 1.09004 * 110.06268 * 78.50502 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6961 -1.2124 5 1 1.2855 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1360 -2.5252 0.0005 11 6 -0.4630 -4.0288 -0.0301 12 1 -0.7398 -4.3618 0.9703 13 8 -1.5368 -4.2778 -0.9070 14 6 -1.3296 -4.0855 -2.2917 15 6 -0.1718 -4.9245 -2.8061 16 7 0.9379 -4.9460 -1.8735 17 6 2.1610 -5.2117 -2.3731 18 8 3.1338 -5.1843 -1.6451 19 6 2.3200 -5.5373 -3.8096 20 6 1.4111 -6.3740 -4.4661 21 7 1.5774 -6.6457 -5.7447 22 7 2.5531 -6.1694 -6.4277 23 6 3.4650 -5.3697 -5.9000 24 8 4.4774 -4.8927 -6.6673 25 6 3.3799 -5.0135 -4.5566 26 6 0.8393 -4.7060 -0.4516 27 1 0.9505 -5.6501 0.0817 28 6 1.9375 -3.7231 0.0005 29 1 -0.4850 0.8402 -0.0004 30 1 -0.5530 -2.0381 -0.8809 31 1 -0.5494 -2.0752 0.9031 32 1 -1.1159 -3.0327 -2.4767 33 1 -2.2365 -4.3629 -2.8290 34 1 0.1706 -4.5124 -3.7553 35 1 -0.5182 -5.9452 -2.9686 36 1 0.5755 -6.7952 -3.9271 37 1 4.2786 -4.0525 -7.1028 38 1 4.1102 -4.3581 -4.1056 39 1 2.7745 -3.7508 -0.6971 40 1 2.2789 -3.9780 1.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083113835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:16 Heat of formation + Delta-G solvation = -15.704925 kcal Electronic energy + Delta-G solvation = -28113.766116 eV Core-core repulsion = 24124.054552 eV Total energy + Delta-G solvation = -3989.711564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.86077 -41.85287 -39.88265 -38.71240 -37.66973 -36.43170 -34.83933 -33.98923 -32.61022 -31.70762 -29.66725 -29.29913 -27.02093 -26.14232 -25.74732 -24.65517 -22.99989 -21.91784 -20.56005 -19.79627 -19.52647 -18.98941 -18.33034 -18.03538 -17.71678 -17.39153 -17.00961 -16.74429 -16.37206 -16.01617 -15.73489 -15.62921 -15.30757 -15.07663 -14.63235 -14.40953 -14.15860 -13.85100 -13.60905 -13.33500 -13.05313 -12.97377 -12.85388 -12.61610 -12.47543 -12.20647 -12.18368 -11.91072 -11.75119 -11.58032 -11.19090 -10.93824 -10.78515 -10.74896 -10.35459 -9.71985 -8.91014 -7.89459 -5.25240 -0.89152 -0.44150 1.24014 1.42007 1.44433 1.51175 1.54717 2.09874 2.35244 2.44349 2.69435 2.86851 3.01572 3.24138 3.28792 3.46662 3.61142 3.64826 3.69003 3.82718 3.90022 4.01757 4.18716 4.25249 4.34193 4.37797 4.54418 4.58471 4.68382 4.76387 4.82817 4.95486 5.04167 5.38738 5.46235 5.49244 5.64309 5.96603 6.14851 6.37035 6.39193 6.76442 7.06362 7.36464 7.72650 8.33560 9.19303 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.004739 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.578292 B = 5907.421686 C = 7047.802229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.975 3.025 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.619 5.619 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.132 0.868 13 O -0.368 6.368 14 C 0.052 3.948 15 C 0.067 3.933 16 N -0.574 5.574 17 C 0.554 3.446 18 O -0.539 6.539 19 C -0.108 4.108 20 C 0.069 3.931 21 N -0.225 5.225 22 N -0.268 5.268 23 C 0.270 3.730 24 O -0.475 6.475 25 C -0.085 4.085 26 C 0.120 3.880 27 H 0.106 0.894 28 C 0.105 3.895 29 H 0.248 0.752 30 H 0.025 0.975 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.217 0.783 37 H 0.430 0.570 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -12.567 -10.231 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.347 5.347 10 C 0.036 3.964 11 C 0.026 3.974 12 H 0.150 0.850 13 O -0.285 6.285 14 C -0.025 4.025 15 C -0.055 4.055 16 N -0.306 5.306 17 C 0.341 3.659 18 O -0.417 6.417 19 C -0.122 4.122 20 C -0.096 4.096 21 N -0.068 5.068 22 N -0.120 5.120 23 C 0.083 3.917 24 O -0.284 6.284 25 C -0.116 4.116 26 C 0.016 3.984 27 H 0.124 0.876 28 C -0.021 4.021 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.168 0.832 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.233 0.767 37 H 0.294 0.706 38 H 0.184 0.816 39 H 0.091 0.909 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.969 -13.610 -10.961 17.502 hybrid contribution 1.195 2.762 1.306 3.280 sum 0.227 -10.848 -9.655 14.524 Atomic orbital electron populations 1.70155 1.06039 1.25382 1.57974 1.25562 0.96593 1.00672 1.02324 0.85210 0.77249 0.79057 0.78167 1.20479 1.21696 1.20474 1.19298 0.90694 0.83705 1.43523 0.90793 1.44465 1.02025 1.00995 1.87169 1.21455 0.84155 0.91790 0.99035 1.22744 0.85500 0.94617 0.94504 0.85027 1.86921 1.36375 1.88371 1.16804 1.22523 0.99862 0.98204 0.81881 1.22296 0.87277 1.03667 0.92273 1.46610 1.07784 1.68062 1.08111 1.18324 0.83129 0.77594 0.86859 1.90730 1.39661 1.51315 1.60002 1.21097 0.96983 0.99599 0.94504 1.25214 0.98654 0.93437 0.92311 1.73055 1.11528 1.16057 1.06127 1.72718 0.99205 1.08014 1.32081 1.20663 0.88492 0.93895 0.88664 1.84766 1.33414 1.45109 1.65155 1.22854 0.96765 0.97879 0.94060 1.21635 0.96903 0.99286 0.80588 0.87644 1.22194 0.96755 0.84038 0.99071 0.94282 0.95690 0.96778 0.95432 0.83217 0.89169 0.86363 0.76695 0.70645 0.81646 0.90917 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.80 10.26 21.65 0.22 -55.57 16 2 C -0.06 -3.28 5.48 84.86 0.47 -2.81 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.24 -13.72 10.25 84.03 0.86 -12.86 16 8 H 0.07 4.10 7.83 -2.92 -0.02 4.07 16 9 N -0.62 -31.59 3.39 -696.32 -2.36 -33.95 16 10 C 0.16 7.68 5.02 86.63 0.43 8.11 16 11 C 0.09 2.97 3.83 30.81 0.12 3.09 16 12 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 13 O -0.37 -11.18 10.24 -146.19 -1.50 -12.68 16 14 C 0.05 1.27 6.72 71.64 0.48 1.75 16 15 C 0.07 1.35 4.90 86.33 0.42 1.77 16 16 N -0.57 -15.96 3.09 -809.50 -2.50 -18.46 16 17 C 0.55 16.09 6.86 86.88 0.60 16.69 16 18 O -0.54 -19.53 13.84 -3.80 -0.05 -19.58 16 19 C -0.11 -2.47 4.88 -19.85 -0.10 -2.56 16 20 C 0.07 1.27 9.09 85.11 0.77 2.04 16 21 N -0.23 -4.96 11.48 -56.51 -0.65 -5.60 16 22 N -0.27 -6.39 11.50 -170.31 -1.96 -8.35 16 23 C 0.27 5.74 7.85 84.87 0.67 6.40 16 24 O -0.48 -8.11 13.57 -90.15 -1.22 -9.33 16 25 C -0.08 -1.90 9.85 22.90 0.23 -1.67 16 26 C 0.12 3.93 3.41 45.66 0.16 4.09 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 C 0.10 4.43 6.30 86.70 0.55 4.98 16 29 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.03 1.34 5.74 -2.39 -0.01 1.32 16 31 H 0.01 0.76 7.49 -2.39 -0.02 0.75 16 32 H 0.03 0.88 6.82 -2.38 -0.02 0.86 16 33 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.09 1.68 6.28 -2.39 -0.02 1.66 16 35 H 0.12 1.39 6.29 -2.38 -0.01 1.37 16 36 H 0.22 2.41 5.66 -2.91 -0.02 2.39 16 37 H 0.43 2.81 9.06 -74.05 -0.67 2.14 16 38 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.07 3.31 4.78 -12.49 -0.06 3.25 16 40 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -76.35 321.58 -1.94 -78.29 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.40 Total: 8.72 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 5.65 Total: 29.01 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -7.24 Total: -121.94 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.77 Total: -41.60 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.35 -1.94 -78.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083113835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.583 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds