Wall clock time and date at job start Fri Apr 10 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47280 * 270.00476 * 3 2 1 5 5 H 1.48502 * 109.46806 * 30.00425 * 3 2 1 6 6 H 1.48497 * 109.47304 * 150.00135 * 3 2 1 7 7 C 1.38819 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.46871 * 125.36402 * 0.02805 * 9 7 2 11 11 C 1.54203 * 106.39522 * 197.81698 * 10 9 7 12 12 H 1.08999 * 109.64206 * 89.90607 * 11 10 9 13 13 O 1.40778 * 110.23026 * 210.33919 * 11 10 9 14 14 C 1.41321 * 118.40290 * 67.70552 * 13 11 10 15 15 C 1.51773 * 111.63649 * 56.76453 * 14 13 11 16 16 N 1.44960 * 111.99877 * 319.67003 * 15 14 13 17 17 C 1.34774 * 117.32926 * 203.54278 * 16 15 14 18 18 O 1.21588 * 120.00544 * 181.39703 * 17 16 15 19 19 C 1.47581 * 119.99719 * 1.39108 * 17 16 15 20 20 C 1.38047 * 119.72835 * 172.36992 * 19 17 16 21 21 N 1.34878 * 119.94940 * 179.75071 * 20 19 17 22 22 H 0.97003 * 120.30368 * 180.23716 * 21 20 19 23 23 C 1.34950 * 119.38293 * 0.25516 * 21 20 19 24 24 O 1.21858 * 120.27178 * 179.97438 * 23 21 20 25 25 C 1.41784 * 119.46077 * 359.97438 * 23 21 20 26 26 N 1.30605 * 120.03468 * 0.02562 * 25 23 21 27 27 C 1.44545 * 125.35229 * 23.26060 * 16 15 14 28 28 H 1.08997 * 109.48683 * 106.12876 * 27 16 15 29 29 C 1.46784 * 125.36559 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.07377 * 317.05313 * 10 9 7 32 32 H 1.09005 * 110.06960 * 78.53067 * 10 9 7 33 33 H 1.09004 * 109.06813 * 177.47039 * 14 13 11 34 34 H 1.09001 * 109.06435 * 296.47939 * 14 13 11 35 35 H 1.09003 * 109.07466 * 198.93374 * 15 14 13 36 36 H 1.08999 * 108.80402 * 80.23908 * 15 14 13 37 37 H 1.07998 * 120.02240 * 0.02807 * 20 19 17 38 38 H 1.08007 * 119.98315 * 180.02562 * 25 23 21 39 39 H 1.09003 * 109.82655 * 59.37378 * 29 9 7 40 40 H 1.09005 * 109.82443 * 298.41871 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1368 -2.5253 -0.0006 11 6 -0.4386 -3.9682 0.4521 12 1 -0.5380 -3.9986 1.5371 13 8 -1.6323 -4.4242 -0.1388 14 6 -1.6533 -4.6337 -1.5362 15 6 -0.5764 -5.6103 -1.9719 16 7 0.6694 -5.3972 -1.2620 17 6 1.8008 -5.8267 -1.8551 18 8 2.8702 -5.6958 -1.2915 19 6 1.7418 -6.4561 -3.1886 20 6 2.9121 -6.7501 -3.8593 21 7 2.8634 -7.3299 -5.0761 22 1 3.6826 -7.5419 -5.5504 23 6 1.6645 -7.6121 -5.6276 24 8 1.6016 -8.1355 -6.7263 25 6 0.4786 -7.2947 -4.9183 26 7 0.5512 -6.7334 -3.7412 27 6 0.7982 -4.7567 0.0274 28 1 1.0093 -5.5088 0.7875 29 6 1.9373 -3.7224 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5794 -1.8142 0.6969 32 1 -0.5282 -2.3576 -1.0040 33 1 -2.6291 -5.0260 -1.8228 34 1 -1.4901 -3.6818 -2.0414 35 1 -0.4000 -5.4924 -3.0411 36 1 -0.9246 -6.6254 -1.7811 37 1 3.8659 -6.5200 -3.4080 38 1 -0.4854 -7.5173 -5.3516 39 1 2.5662 -3.8407 0.8818 40 1 2.5349 -3.8550 -0.9024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083177536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:21 Heat of formation + Delta-G solvation = 11.199956 kcal Electronic energy + Delta-G solvation = -28001.172561 eV Core-core repulsion = 24012.627680 eV Total energy + Delta-G solvation = -3988.544881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19464 -40.65917 -38.59813 -37.67254 -36.04456 -35.68095 -34.59210 -32.38671 -30.78628 -29.97198 -27.92325 -27.39716 -25.92059 -25.04566 -24.25545 -23.16176 -21.91949 -20.43386 -19.27114 -18.77212 -18.32950 -17.52517 -16.99110 -16.69901 -16.43341 -16.22181 -15.71196 -15.18775 -15.03822 -14.74872 -14.65888 -14.31732 -13.98297 -13.75112 -13.37601 -13.00352 -12.81731 -12.49119 -12.26631 -12.08002 -11.97316 -11.90061 -11.12893 -11.07883 -10.88708 -10.65144 -10.42244 -10.39449 -10.09496 -9.89371 -9.69917 -9.39839 -8.84727 -8.70332 -8.60240 -8.16298 -6.80890 -5.67510 -3.06155 0.08727 0.89111 2.10405 2.67145 3.00426 3.40044 3.42296 3.45268 3.47371 3.72110 3.82896 4.17428 4.31456 4.49396 4.57830 4.83971 5.00457 5.19695 5.33933 5.43077 5.47635 5.58625 5.62722 5.74389 5.75743 5.85496 5.94514 6.07059 6.11326 6.18615 6.29989 6.58601 6.78384 7.04789 7.12653 7.26682 7.39119 7.44570 7.61916 7.76030 7.93407 8.22461 8.32654 9.22132 9.82651 10.45345 11.39078 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.004026 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.136305 B = 6953.697399 C = 7646.321487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.140 3.860 11 C 0.069 3.931 12 H 0.113 0.887 13 O -0.372 6.372 14 C 0.053 3.947 15 C 0.072 3.928 16 N -0.565 5.565 17 C 0.577 3.423 18 O -0.531 6.531 19 C -0.072 4.072 20 C 0.178 3.822 21 N -0.586 5.586 22 H 0.426 0.574 23 C 0.478 3.522 24 O -0.525 6.525 25 C 0.032 3.968 26 N -0.362 5.362 27 C 0.109 3.891 28 H 0.073 0.927 29 C 0.129 3.871 30 H 0.252 0.748 31 H 0.098 0.902 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.192 0.808 38 H 0.195 0.805 39 H 0.035 0.965 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -15.965 -7.630 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.014 3.986 11 C 0.010 3.990 12 H 0.130 0.870 13 O -0.289 6.289 14 C -0.025 4.025 15 C -0.051 4.051 16 N -0.296 5.296 17 C 0.364 3.636 18 O -0.409 6.409 19 C -0.195 4.195 20 C 0.042 3.958 21 N -0.218 5.218 22 H 0.266 0.734 23 C 0.273 3.727 24 O -0.400 6.400 25 C -0.157 4.157 26 N -0.078 5.078 27 C 0.005 3.995 28 H 0.091 0.909 29 C 0.003 3.997 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.209 0.791 38 H 0.212 0.788 39 H 0.052 0.948 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.305 -15.741 -7.254 17.335 hybrid contribution 1.732 0.666 -0.911 2.067 sum 2.037 -15.075 -8.165 17.265 Atomic orbital electron populations 1.69868 1.04842 1.24883 1.57502 1.24791 0.95731 0.97674 1.02354 0.86083 0.78598 0.83382 0.77507 1.21739 1.21630 1.20643 1.19064 0.90526 0.82215 1.43234 0.90354 1.44267 1.01390 1.00171 1.87322 1.22063 0.85211 0.90815 1.00481 1.23039 0.82104 0.95971 0.97867 0.86961 1.86835 1.34500 1.86431 1.21166 1.22364 0.98718 0.98520 0.82865 1.22473 0.84058 0.99438 0.99118 1.46525 1.06864 1.56660 1.19600 1.17284 0.84337 0.78676 0.83303 1.90804 1.28801 1.56890 1.64447 1.20530 0.87666 1.12122 0.99225 1.23201 1.02437 0.86737 0.83453 1.43685 1.12428 1.48988 1.16741 0.73444 1.18792 0.84832 0.81287 0.87756 1.91004 1.86082 1.43279 1.19682 1.24965 0.98450 1.00116 0.92198 1.68408 1.25852 1.03639 1.09936 1.21636 0.98937 0.95455 0.83445 0.90916 1.21686 0.93243 0.84213 1.00559 0.93721 0.88384 0.96015 0.88030 0.92707 0.86035 0.91560 0.79102 0.78847 0.94755 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.18 55.49 0.56 -26.32 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.24 10.25 -15.06 -0.15 -6.40 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.62 3.39 -171.42 -0.58 -16.20 16 10 C 0.14 3.40 5.26 -3.21 -0.02 3.38 16 11 C 0.07 1.35 3.91 -26.26 -0.10 1.25 16 12 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 13 O -0.37 -6.69 10.25 -34.35 -0.35 -7.04 16 14 C 0.05 0.79 6.73 36.53 0.25 1.03 16 15 C 0.07 1.00 5.08 -5.49 -0.03 0.97 16 16 N -0.57 -9.30 3.09 -170.33 -0.53 -9.83 16 17 C 0.58 9.01 6.90 -12.45 -0.09 8.92 16 18 O -0.53 -9.35 13.58 5.29 0.07 -9.28 16 19 C -0.07 -0.85 6.52 -83.11 -0.54 -1.39 16 20 C 0.18 1.48 10.77 -16.28 -0.18 1.31 16 21 N -0.59 -4.15 5.28 -14.20 -0.08 -4.22 16 22 H 0.43 1.78 8.92 -40.82 -0.36 1.42 16 23 C 0.48 4.61 7.74 -14.83 -0.11 4.50 16 24 O -0.53 -6.64 17.95 5.05 0.09 -6.55 16 25 C 0.03 0.28 11.23 -16.72 -0.19 0.09 16 26 N -0.36 -3.85 5.82 -9.34 -0.05 -3.91 16 27 C 0.11 2.04 3.30 -68.67 -0.23 1.81 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 C 0.13 2.84 6.05 -3.43 -0.02 2.82 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.10 2.69 6.25 -51.93 -0.32 2.36 16 32 H 0.02 0.58 6.48 -51.93 -0.34 0.24 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 35 H 0.12 1.57 4.92 -67.19 -0.33 1.24 16 36 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.19 1.22 7.60 -52.49 -0.40 0.82 16 38 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.24 5.36 -51.93 -0.28 0.96 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -35.03 320.70 -7.02 -42.05 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.46 Total: 1.44 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: -1.50 Total: 17.92 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.67 Total: -60.48 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.19 Total: -22.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.03 -7.02 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083177536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.248 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds