Wall clock time and date at job start Fri Apr 10 2020 18:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 11 11 C 1.54325 * 107.27099 * 181.01921 * 10 9 7 12 12 H 1.09003 * 110.71636 * 140.73482 * 11 10 9 13 13 N 1.46504 * 110.71557 * 263.82677 * 11 10 9 14 14 C 1.34773 * 120.00192 * 273.54211 * 13 11 10 15 15 O 1.21282 * 119.99710 * 0.02562 * 14 13 11 16 16 C 1.50691 * 119.99995 * 180.02562 * 14 13 11 17 17 H 1.08996 * 112.83497 * 309.66958 * 16 14 13 18 18 C 1.53519 * 113.58690 * 178.55965 * 16 14 13 19 19 C 1.51621 * 87.25131 * 245.40696 * 18 16 14 20 20 C 1.38392 * 147.48952 * 180.02562 * 19 18 16 21 21 C 1.38545 * 120.18889 * 179.91422 * 20 19 18 22 22 C 1.38470 * 120.01082 * 0.03651 * 21 20 19 23 23 F 1.35098 * 120.04929 * 179.97438 * 22 21 20 24 24 C 1.38316 * 119.89847 * 359.97438 * 22 21 20 25 25 C 1.38338 * 120.30745 * 0.02562 * 24 22 21 26 26 C 1.55150 * 102.94181 * 22.18967 * 11 10 9 27 27 H 1.09006 * 111.00325 * 82.57126 * 26 11 10 28 28 O 1.42902 * 111.00634 * 206.42327 * 26 11 10 29 29 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 30 30 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87991 * 300.44004 * 10 9 7 32 32 H 1.09003 * 109.88107 * 61.44368 * 10 9 7 33 33 H 0.96994 * 119.99586 * 93.55506 * 13 11 10 34 34 H 1.08997 * 113.58907 * 359.97438 * 18 16 14 35 35 H 1.09004 * 113.59022 * 130.74024 * 18 16 14 36 36 H 1.08001 * 119.82601 * 359.97285 * 20 19 18 37 37 H 1.08000 * 119.95055 * 180.02562 * 21 20 19 38 38 H 1.08008 * 119.84594 * 180.02562 * 24 22 21 39 39 H 0.96693 * 114.00168 * 180.02562 * 28 26 11 40 40 H 1.08991 * 110.36854 * 274.75573 * 29 9 7 41 41 H 1.08999 * 110.36513 * 37.07596 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 1.8975 -3.7263 0.0102 11 6 0.7879 -4.7394 -0.3417 12 1 1.2017 -5.5942 -0.8767 13 7 0.0842 -5.1777 0.8663 14 6 0.5620 -6.2115 1.5869 15 8 1.5747 -6.7788 1.2355 16 6 -0.1622 -6.6626 2.8290 17 1 -0.3841 -5.8417 3.5109 18 6 0.4893 -7.8717 3.5149 19 6 -0.7634 -8.6518 3.1668 20 6 -1.4412 -9.8570 3.2237 21 6 -2.7037 -9.9733 2.6651 22 6 -3.2908 -8.8820 2.0470 23 9 -4.5216 -8.9947 1.5016 24 6 -2.6150 -7.6766 1.9888 25 6 -1.3542 -7.5555 2.5451 26 6 -0.1555 -3.9170 -1.2586 27 1 0.2125 -3.9017 -2.2846 28 8 -1.4914 -4.4214 -1.2033 29 6 -0.0676 -2.5105 -0.6104 30 1 -0.4849 0.8401 -0.0004 31 1 2.7542 -3.8712 -0.6480 32 1 2.2027 -3.8530 1.0489 33 1 -0.7256 -4.7238 1.1473 34 1 1.3830 -8.2328 3.0060 35 1 0.6375 -7.7378 4.5865 36 1 -0.9839 -10.7083 3.7060 37 1 -3.2294 -10.9155 2.7121 38 1 -3.0739 -6.8259 1.5068 39 1 -2.1173 -3.9391 -1.7608 40 1 -0.7316 -2.4452 0.2515 41 1 -0.3159 -1.7404 -1.3407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083729899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:23 Heat of formation + Delta-G solvation = -35.203864 kcal Electronic energy + Delta-G solvation = -26723.447576 eV Core-core repulsion = 22712.970513 eV Total energy + Delta-G solvation = -4010.477063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03615 -41.01204 -39.21793 -37.72940 -35.19221 -34.99024 -33.79917 -31.73436 -31.01721 -28.72901 -27.70047 -27.10222 -25.30854 -24.30879 -22.71183 -21.36618 -20.55200 -20.05229 -19.74441 -17.80246 -17.25196 -17.03559 -16.73748 -16.62367 -15.75471 -15.64899 -15.32676 -14.93289 -14.90638 -14.34238 -14.12846 -13.94506 -13.73679 -13.16425 -13.04533 -12.91799 -12.55636 -12.40745 -12.26862 -11.99401 -11.87845 -11.43876 -11.37230 -11.23805 -10.93206 -10.90232 -10.81580 -10.26731 -10.18324 -9.92953 -9.80234 -9.31327 -9.10806 -8.73869 -8.64582 -8.61446 -6.92753 -5.85133 -3.18890 0.87570 1.00784 2.70149 3.24848 3.34659 3.40296 3.41537 3.45832 3.75573 4.02860 4.25603 4.34693 4.34981 4.52213 4.75019 4.96455 5.05543 5.14300 5.23096 5.33123 5.33611 5.44921 5.49436 5.57050 5.63779 5.73957 5.76549 5.87629 5.92000 5.97994 6.07924 6.15155 6.42173 6.44475 6.61154 6.66832 6.92919 7.20634 7.38386 7.64953 7.80991 7.98303 8.13676 8.44894 9.07851 9.69214 10.34596 11.27748 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003107 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.901438 B = 9010.898439 C = 9614.194936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.126 3.874 11 C 0.145 3.855 12 H 0.091 0.909 13 N -0.691 5.691 14 C 0.530 3.470 15 O -0.543 6.543 16 C -0.067 4.067 17 H 0.126 0.874 18 C -0.053 4.053 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.148 4.148 22 C 0.097 3.903 23 F -0.138 7.138 24 C -0.118 4.118 25 C -0.091 4.091 26 C 0.062 3.938 27 H 0.071 0.929 28 O -0.564 6.564 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.407 0.593 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.378 0.622 40 H 0.036 0.964 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 -16.788 4.980 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.327 5.327 10 C -0.001 4.001 11 C 0.040 3.960 12 H 0.109 0.891 13 N -0.341 5.341 14 C 0.315 3.685 15 O -0.421 6.421 16 C -0.088 4.088 17 H 0.144 0.856 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.167 4.167 22 C 0.078 3.922 23 F -0.116 7.116 24 C -0.136 4.136 25 C -0.092 4.092 26 C 0.002 3.998 27 H 0.089 0.911 28 O -0.369 6.369 29 C 0.024 3.976 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.242 0.758 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.226 0.774 40 H 0.054 0.946 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.936 -17.390 5.115 18.786 hybrid contribution -0.617 1.637 -0.391 1.792 sum -5.553 -15.753 4.724 17.359 Atomic orbital electron populations 1.69923 1.04978 1.25381 1.56362 1.24836 0.95683 0.97908 1.01825 0.86116 0.78661 0.83114 0.77746 1.21454 1.20617 1.21672 1.19038 0.91148 0.82481 1.43184 0.90395 1.44317 1.09067 0.99961 1.79314 1.21758 0.94047 0.85439 0.98833 1.21999 0.92620 0.96558 0.84837 0.89126 1.45640 1.29280 1.32891 1.26278 1.19827 0.84679 0.79810 0.84178 1.90673 1.25116 1.56138 1.70145 1.21611 0.91711 0.98881 0.96583 0.85622 1.21810 0.95613 0.90103 1.01443 1.22389 0.97739 0.93710 0.98930 1.20211 0.93125 0.96567 0.99009 1.21093 0.96304 0.98379 1.00876 1.17296 0.81487 0.94678 0.98777 1.91508 1.39800 1.96606 1.83730 1.20253 0.94394 0.97269 1.01714 1.21591 0.93054 0.96827 0.97714 1.23719 0.81863 0.96266 0.97988 0.91101 1.86349 1.19221 1.59870 1.71457 1.22061 0.86772 0.91023 0.97776 0.93610 0.94582 0.94869 0.75804 0.86919 0.88197 0.85155 0.84388 0.84553 0.77449 0.94604 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 10.68 55.49 0.59 -25.20 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.49 29.56 -169.99 -5.03 16.46 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.24 10.24 -15.06 -0.15 -6.39 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.65 16 9 N -0.60 -14.67 3.39 -169.94 -0.58 -15.25 16 10 C 0.13 2.65 6.98 -3.07 -0.02 2.63 16 11 C 0.15 2.63 3.14 -66.10 -0.21 2.42 16 12 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 13 N -0.69 -11.39 4.78 -52.03 -0.25 -11.64 16 14 C 0.53 8.44 7.36 -10.99 -0.08 8.35 16 15 O -0.54 -10.15 15.43 5.56 0.09 -10.07 16 16 C -0.07 -0.81 4.33 -92.22 -0.40 -1.21 16 17 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.05 -0.56 7.77 -27.17 -0.21 -0.77 16 19 C -0.13 -1.42 7.49 -103.77 -0.78 -2.20 16 20 C -0.07 -0.68 10.06 -39.41 -0.40 -1.08 16 21 C -0.15 -1.45 10.04 -39.38 -0.40 -1.85 16 22 C 0.10 1.13 7.30 -39.47 -0.29 0.84 16 23 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 24 C -0.12 -1.43 10.01 -39.52 -0.40 -1.83 16 25 C -0.09 -1.12 6.98 -103.79 -0.72 -1.84 16 26 C 0.06 1.09 4.23 -24.47 -0.10 0.99 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 O -0.56 -8.65 12.63 -35.23 -0.44 -9.09 16 29 C 0.15 3.33 5.13 -2.41 -0.01 3.31 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.41 6.44 8.20 -40.82 -0.33 6.11 16 34 H 0.11 1.32 7.04 -51.93 -0.37 0.95 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.38 4.40 9.12 45.56 0.42 4.82 16 40 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -31.84 349.52 -8.96 -40.80 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.39 Total: 9.23 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.26 Total: 1.13 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.23 Total: -52.09 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.36 Total: -19.16 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.84 -8.96 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083729899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.595 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds