Wall clock time and date at job start Fri Apr 10 2020 18:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00325 * 2 1 4 4 H 1.48496 * 109.46961 * 245.27831 * 3 2 1 5 5 H 1.48500 * 109.46939 * 125.27904 * 3 2 1 6 6 H 1.48502 * 109.47157 * 5.27936 * 3 2 1 7 7 C 1.38815 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99696 * 345.67427 * 7 2 1 9 9 N 1.36934 * 119.99683 * 165.68612 * 7 2 1 10 10 C 1.47428 * 125.64443 * 168.62225 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81160 * 10 9 7 12 12 H 1.09007 * 110.94094 * 155.28626 * 11 10 9 13 13 N 1.46500 * 111.19685 * 279.19195 * 11 10 9 14 14 C 1.34778 * 119.99855 * 267.19203 * 13 11 10 15 15 O 1.21558 * 120.00056 * 359.97438 * 14 13 11 16 16 C 1.47853 * 119.99861 * 179.97438 * 14 13 11 17 17 C 1.39668 * 120.49290 * 359.71522 * 16 14 13 18 18 N 1.31731 * 120.88186 * 179.74846 * 17 16 14 19 19 C 1.31759 * 122.04000 * 0.54474 * 18 17 16 20 20 C 1.39632 * 120.88306 * 359.72439 * 19 18 17 21 21 C 1.47854 * 120.49106 * 179.97438 * 20 19 18 22 22 N 1.34772 * 119.99854 * 0.02562 * 21 20 19 23 23 O 1.21547 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.39726 * 120.48883 * 179.97438 * 16 14 13 25 25 C 1.55155 * 101.48498 * 37.29621 * 11 10 9 26 26 H 1.09004 * 110.72410 * 82.69550 * 25 11 10 27 27 O 1.42908 * 110.72193 * 205.96623 * 25 11 10 28 28 C 1.47018 * 125.65004 * 348.92324 * 9 7 2 29 29 H 0.96993 * 120.00287 * 174.93189 * 1 2 3 30 30 H 1.08993 * 110.37058 * 274.73874 * 10 9 7 31 31 H 1.09000 * 110.36745 * 37.06954 * 10 9 7 32 32 H 0.96998 * 120.00055 * 87.18187 * 13 11 10 33 33 H 1.08003 * 119.56016 * 0.02630 * 17 16 14 34 34 H 1.08000 * 119.55838 * 179.74527 * 19 18 17 35 35 H 0.96999 * 120.00472 * 0.02562 * 22 21 20 36 36 H 0.97001 * 119.99918 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.92724 * 359.97438 * 24 16 14 38 38 H 0.96697 * 114.00144 * 174.97422 * 27 25 11 39 39 H 1.08997 * 109.88355 * 300.44588 * 28 9 7 40 40 H 1.09007 * 109.88020 * 61.45989 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.0048 1.7535 -1.2717 5 1 3.1981 1.6419 1.1430 6 1 1.2905 2.7435 0.1288 7 6 2.0102 -1.2022 -0.0005 8 1 1.4953 -2.1230 0.2305 9 7 3.3477 -1.2205 -0.2937 10 6 4.2532 -2.3684 -0.1040 11 6 5.4100 -2.1282 -1.1093 12 1 6.3199 -2.6326 -0.7839 13 7 5.0336 -2.5504 -2.4607 14 6 5.3240 -3.7970 -2.8827 15 8 5.8986 -4.5709 -2.1421 16 6 4.9436 -4.2232 -4.2464 17 6 4.2778 -3.3444 -5.1038 18 7 3.9397 -3.7144 -6.3220 19 6 4.1998 -4.9208 -6.7836 20 6 4.8573 -5.8647 -5.9921 21 6 5.1443 -7.2161 -6.5186 22 7 4.7712 -7.5445 -7.7714 23 8 5.7167 -8.0310 -5.8217 24 6 5.2400 -5.5130 -4.6946 25 6 5.5708 -0.5869 -1.0327 26 1 6.1871 -0.3054 -0.1788 27 8 6.1234 -0.0752 -2.2472 28 6 4.1197 -0.0969 -0.8440 29 1 -0.4850 -0.8367 -0.0742 30 1 4.6330 -2.3872 0.9174 31 1 3.7377 -3.3005 -0.3353 32 1 4.5753 -1.9327 -3.0518 33 1 4.0410 -2.3465 -4.7650 34 1 3.9008 -5.1829 -7.7877 35 1 4.3147 -6.8941 -8.3277 36 1 4.9598 -8.4310 -8.1170 37 1 5.7505 -6.2189 -4.0561 38 1 6.1730 0.8899 -2.2808 39 1 3.7023 0.2044 -1.8048 40 1 4.0970 0.7435 -0.1501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084067316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:27 Heat of formation + Delta-G solvation = -39.323089 kcal Electronic energy + Delta-G solvation = -26715.111853 eV Core-core repulsion = 22724.376129 eV Total energy + Delta-G solvation = -3990.735725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13278 -39.87697 -39.03017 -38.06658 -35.46564 -34.35578 -34.07441 -32.89092 -32.28908 -31.47392 -28.90005 -27.97291 -25.38977 -24.72426 -23.73582 -22.13291 -21.14809 -20.76905 -19.92509 -18.90222 -17.78356 -17.57800 -17.31234 -17.16699 -17.00863 -16.15949 -15.86116 -15.40336 -15.23258 -14.85828 -14.75574 -14.24906 -13.88711 -13.75694 -13.62709 -13.45501 -13.07155 -12.94130 -12.88396 -12.43440 -12.04375 -11.41714 -11.34340 -10.93691 -10.84597 -10.49137 -10.28665 -10.23870 -10.17729 -10.03457 -9.69145 -9.63572 -9.37184 -9.11149 -9.01246 -8.71868 -7.16117 -6.39912 -3.33351 0.08189 0.60740 2.32785 2.88945 2.90413 3.17284 3.26111 3.38182 3.59486 3.60742 3.78316 4.13623 4.27376 4.33367 4.50314 4.51688 4.66915 4.75126 4.80700 4.94066 5.00177 5.12480 5.32537 5.38773 5.54915 5.68166 5.71696 5.84566 5.99847 6.02218 6.23746 6.30822 6.40072 6.41922 6.69415 6.81289 7.35601 7.50302 7.60067 7.65019 7.77732 8.21768 8.23771 8.93694 9.43129 10.08904 11.10323 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003274 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.722548 B = 8549.551230 C = 8939.232655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.021 4.021 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.301 1.301 7 C -0.322 4.322 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.123 3.877 11 C 0.141 3.859 12 H 0.104 0.896 13 N -0.686 5.686 14 C 0.564 3.436 15 O -0.537 6.537 16 C -0.183 4.183 17 C 0.165 3.835 18 N -0.485 5.485 19 C 0.154 3.846 20 C -0.204 4.204 21 C 0.572 3.428 22 N -0.849 5.849 23 O -0.531 6.531 24 C 0.042 3.958 25 C 0.083 3.917 26 H 0.080 0.920 27 O -0.558 6.558 28 C 0.078 3.922 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.401 0.599 36 H 0.408 0.592 37 H 0.162 0.838 38 H 0.380 0.620 39 H 0.056 0.944 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -6.553 -15.687 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.221 4.221 3 Si 0.907 3.093 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.229 1.229 7 C -0.449 4.449 8 H 0.098 0.902 9 N -0.335 5.335 10 C -0.004 4.004 11 C 0.035 3.965 12 H 0.122 0.878 13 N -0.336 5.336 14 C 0.349 3.651 15 O -0.415 6.415 16 C -0.188 4.188 17 C 0.008 3.992 18 N -0.193 5.193 19 C -0.005 4.005 20 C -0.210 4.210 21 C 0.357 3.643 22 N -0.414 5.414 23 O -0.407 6.407 24 C 0.015 3.985 25 C 0.023 3.977 26 H 0.098 0.902 27 O -0.363 6.363 28 C -0.048 4.048 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.231 0.769 36 H 0.240 0.760 37 H 0.179 0.821 38 H 0.228 0.772 39 H 0.074 0.926 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.757 -5.885 -15.137 20.049 hybrid contribution 0.049 -1.305 0.009 1.306 sum 11.806 -7.191 -15.128 20.493 Atomic orbital electron populations 1.70878 1.05702 1.29392 1.50740 1.25874 0.96532 1.00859 0.98828 0.83802 0.73254 0.76348 0.75909 1.21593 1.22713 1.22885 1.20181 0.81332 0.96155 1.47259 0.90247 1.44700 1.05741 1.08175 1.74901 1.22100 0.90087 0.92847 0.95364 1.22316 0.98944 0.92474 0.82744 0.87778 1.45405 1.59030 1.13216 1.15902 1.17824 0.79271 0.82258 0.85745 1.90788 1.42238 1.52535 1.55984 1.21052 1.04821 0.96163 0.96798 1.23342 0.88582 0.99265 0.88024 1.67748 1.19193 1.17515 1.14796 1.23152 0.90376 0.88029 0.98950 1.20867 1.06958 0.96216 0.96945 1.17944 0.78014 0.86607 0.81728 1.43697 1.63037 1.19280 1.15371 1.90865 1.41243 1.50928 1.57706 1.21865 0.89177 0.94339 0.93085 1.23201 0.93967 0.93290 0.87236 0.90187 1.86449 1.85000 1.26397 1.38495 1.22761 0.90984 0.92659 0.98348 0.92720 0.94207 0.92501 0.75839 0.81416 0.81980 0.76916 0.76040 0.82093 0.77226 0.92639 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.70 55.49 0.76 -27.61 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 1.07 25.36 24.53 -169.99 -4.17 21.19 16 4 H -0.29 -6.00 5.43 56.52 0.31 -5.69 16 5 H -0.30 -6.79 6.84 56.52 0.39 -6.41 16 6 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.32 -8.87 10.56 -15.06 -0.16 -9.03 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 N -0.61 -13.85 3.32 -169.93 -0.56 -14.42 16 10 C 0.12 2.39 6.95 -2.41 -0.02 2.37 16 11 C 0.14 2.29 3.31 -65.66 -0.22 2.08 16 12 H 0.10 1.63 7.54 -51.92 -0.39 1.24 16 13 N -0.69 -10.58 4.77 -52.55 -0.25 -10.83 16 14 C 0.56 8.92 7.78 -12.33 -0.10 8.82 16 15 O -0.54 -10.00 16.05 5.32 0.09 -9.92 16 16 C -0.18 -2.43 5.88 -104.87 -0.62 -3.05 16 17 C 0.17 1.96 10.71 -17.06 -0.18 1.77 16 18 N -0.48 -5.37 10.33 -12.58 -0.13 -5.50 16 19 C 0.15 1.34 10.71 -17.06 -0.18 1.16 16 20 C -0.20 -2.12 5.89 -104.87 -0.62 -2.74 16 21 C 0.57 5.80 8.05 -12.33 -0.10 5.70 16 22 N -0.85 -4.41 8.83 30.53 0.27 -4.14 16 23 O -0.53 -7.65 17.25 5.32 0.09 -7.56 16 24 C 0.04 0.54 9.25 -38.45 -0.36 0.18 16 25 C 0.08 1.25 4.12 -24.90 -0.10 1.15 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 O -0.56 -7.19 12.67 -35.23 -0.45 -7.64 16 28 C 0.08 1.51 4.38 -3.07 -0.01 1.50 16 29 H 0.26 8.00 8.73 -40.82 -0.36 7.65 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.41 5.85 6.44 -40.82 -0.26 5.59 16 33 H 0.17 1.78 6.41 -52.48 -0.34 1.44 16 34 H 0.16 0.69 6.41 -52.49 -0.34 0.36 16 35 H 0.40 0.85 6.89 -40.82 -0.28 0.57 16 36 H 0.41 1.60 8.93 -40.82 -0.36 1.24 16 37 H 0.16 2.24 7.40 -52.49 -0.39 1.85 16 38 H 0.38 3.41 9.11 45.56 0.42 3.82 16 39 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 40 H 0.03 0.68 3.81 -51.92 -0.20 0.48 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -37.10 334.74 -5.51 -42.61 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.44 Total: 9.57 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -2.76 Total: 9.21 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.09 Total: -62.51 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.27 Total: -25.12 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.17 Total: 21.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.10 -5.51 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084067316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.286 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds