Wall clock time and date at job start Fri Apr 10 2020 18:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00325 * 2 1 4 4 H 1.48496 * 109.46961 * 245.27831 * 3 2 1 5 5 H 1.48500 * 109.46939 * 125.27904 * 3 2 1 6 6 H 1.48502 * 109.47157 * 5.27936 * 3 2 1 7 7 C 1.38815 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99696 * 345.67427 * 7 2 1 9 9 N 1.36934 * 119.99683 * 165.68612 * 7 2 1 10 10 C 1.47428 * 125.64443 * 168.62225 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81160 * 10 9 7 12 12 H 1.09007 * 110.94094 * 155.28626 * 11 10 9 13 13 N 1.46500 * 111.19685 * 279.19195 * 11 10 9 14 14 C 1.34778 * 119.99855 * 267.19203 * 13 11 10 15 15 O 1.21558 * 120.00056 * 359.97438 * 14 13 11 16 16 C 1.47853 * 119.99861 * 179.97438 * 14 13 11 17 17 C 1.39668 * 120.49290 * 359.71522 * 16 14 13 18 18 N 1.31731 * 120.88186 * 179.74846 * 17 16 14 19 19 C 1.31759 * 122.04000 * 0.54474 * 18 17 16 20 20 C 1.39632 * 120.88306 * 359.72439 * 19 18 17 21 21 C 1.47854 * 120.49106 * 179.97438 * 20 19 18 22 22 N 1.34772 * 119.99854 * 0.02562 * 21 20 19 23 23 O 1.21547 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.39726 * 120.48883 * 179.97438 * 16 14 13 25 25 C 1.55155 * 101.48498 * 37.29621 * 11 10 9 26 26 H 1.09004 * 110.72410 * 82.69550 * 25 11 10 27 27 O 1.42908 * 110.72193 * 205.96623 * 25 11 10 28 28 C 1.47018 * 125.65004 * 348.92324 * 9 7 2 29 29 H 0.96993 * 120.00287 * 174.93189 * 1 2 3 30 30 H 1.08993 * 110.37058 * 274.73874 * 10 9 7 31 31 H 1.09000 * 110.36745 * 37.06954 * 10 9 7 32 32 H 0.96998 * 120.00055 * 87.18187 * 13 11 10 33 33 H 1.08003 * 119.56016 * 0.02630 * 17 16 14 34 34 H 1.08000 * 119.55838 * 179.74527 * 19 18 17 35 35 H 0.96999 * 120.00472 * 0.02562 * 22 21 20 36 36 H 0.97001 * 119.99918 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.92724 * 359.97438 * 24 16 14 38 38 H 0.96697 * 114.00144 * 174.97422 * 27 25 11 39 39 H 1.08997 * 109.88355 * 300.44588 * 28 9 7 40 40 H 1.09007 * 109.88020 * 61.45989 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.0048 1.7535 -1.2717 5 1 3.1981 1.6419 1.1430 6 1 1.2905 2.7435 0.1288 7 6 2.0102 -1.2022 -0.0005 8 1 1.4953 -2.1230 0.2305 9 7 3.3477 -1.2205 -0.2937 10 6 4.2532 -2.3684 -0.1040 11 6 5.4100 -2.1282 -1.1093 12 1 6.3199 -2.6326 -0.7839 13 7 5.0336 -2.5504 -2.4607 14 6 5.3240 -3.7970 -2.8827 15 8 5.8986 -4.5709 -2.1421 16 6 4.9436 -4.2232 -4.2464 17 6 4.2778 -3.3444 -5.1038 18 7 3.9397 -3.7144 -6.3220 19 6 4.1998 -4.9208 -6.7836 20 6 4.8573 -5.8647 -5.9921 21 6 5.1443 -7.2161 -6.5186 22 7 4.7712 -7.5445 -7.7714 23 8 5.7167 -8.0310 -5.8217 24 6 5.2400 -5.5130 -4.6946 25 6 5.5708 -0.5869 -1.0327 26 1 6.1871 -0.3054 -0.1788 27 8 6.1234 -0.0752 -2.2472 28 6 4.1197 -0.0969 -0.8440 29 1 -0.4850 -0.8367 -0.0742 30 1 4.6330 -2.3872 0.9174 31 1 3.7377 -3.3005 -0.3353 32 1 4.5753 -1.9327 -3.0518 33 1 4.0410 -2.3465 -4.7650 34 1 3.9008 -5.1829 -7.7877 35 1 4.3147 -6.8941 -8.3277 36 1 4.9598 -8.4310 -8.1170 37 1 5.7505 -6.2189 -4.0561 38 1 6.1730 0.8899 -2.2808 39 1 3.7023 0.2044 -1.8048 40 1 4.0970 0.7435 -0.1501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084067316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:26 Heat of formation + Delta-G solvation = -74.971437 kcal Electronic energy + Delta-G solvation = -26716.657682 eV Core-core repulsion = 22724.376129 eV Total energy + Delta-G solvation = -3992.281553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08782 -41.03564 -40.02137 -39.33176 -36.78266 -35.55497 -35.06732 -34.08594 -33.79514 -32.58021 -30.45079 -29.46048 -26.40430 -25.98945 -25.14034 -23.11941 -22.74677 -21.88791 -21.26507 -19.89724 -19.55781 -18.56722 -18.28545 -18.20413 -17.91964 -17.47231 -17.06487 -16.44132 -16.39112 -16.01155 -15.94034 -15.51685 -15.44587 -14.93460 -14.83813 -14.62230 -14.42898 -14.40366 -13.93124 -13.74458 -13.47989 -13.17866 -12.92761 -12.31873 -12.13756 -11.92215 -11.57160 -11.33586 -11.24323 -11.20273 -11.06651 -10.84660 -10.68911 -10.57152 -10.52219 -10.19870 -9.10684 -8.66091 -5.50205 -0.78692 -0.35279 1.38930 1.41402 1.53242 1.74993 1.84729 1.89640 2.33563 2.57696 2.65543 2.91836 3.02821 3.12088 3.32152 3.39285 3.51021 3.56269 3.61702 3.67146 3.82252 3.90181 4.13088 4.18612 4.38564 4.42845 4.60102 4.69062 4.73098 4.77449 4.82570 4.96359 5.14572 5.35703 5.50723 5.77547 6.06351 6.27425 6.35074 6.50843 6.79029 6.83462 7.00602 7.16226 7.38116 8.03715 8.86202 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003274 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.722548 B = 8549.551230 C = 8939.232655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.080 4.080 3 Si 1.112 2.888 4 H -0.238 1.238 5 H -0.281 1.281 6 H -0.318 1.318 7 C -0.311 4.311 8 H 0.038 0.962 9 N -0.623 5.623 10 C 0.120 3.880 11 C 0.145 3.855 12 H 0.114 0.886 13 N -0.683 5.683 14 C 0.563 3.437 15 O -0.573 6.573 16 C -0.199 4.199 17 C 0.170 3.830 18 N -0.493 5.493 19 C 0.174 3.826 20 C -0.204 4.204 21 C 0.572 3.428 22 N -0.819 5.819 23 O -0.583 6.583 24 C 0.029 3.971 25 C 0.107 3.893 26 H 0.110 0.890 27 O -0.556 6.556 28 C 0.069 3.931 29 H 0.246 0.754 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.411 0.589 33 H 0.178 0.822 34 H 0.214 0.786 35 H 0.420 0.580 36 H 0.418 0.582 37 H 0.140 0.860 38 H 0.402 0.598 39 H 0.053 0.947 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -5.134 -18.440 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.272 4.272 3 Si 0.939 3.061 4 H -0.162 1.162 5 H -0.209 1.209 6 H -0.248 1.248 7 C -0.440 4.440 8 H 0.056 0.944 9 N -0.352 5.352 10 C -0.006 4.006 11 C 0.039 3.961 12 H 0.132 0.868 13 N -0.332 5.332 14 C 0.350 3.650 15 O -0.454 6.454 16 C -0.204 4.204 17 C 0.013 3.987 18 N -0.201 5.201 19 C 0.016 3.984 20 C -0.209 4.209 21 C 0.357 3.643 22 N -0.385 5.385 23 O -0.463 6.463 24 C 0.002 3.998 25 C 0.046 3.954 26 H 0.128 0.872 27 O -0.364 6.364 28 C -0.055 4.055 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.248 0.752 33 H 0.195 0.805 34 H 0.230 0.770 35 H 0.253 0.747 36 H 0.252 0.748 37 H 0.158 0.842 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.758 -4.462 -17.978 23.074 hybrid contribution -0.613 -1.904 0.776 2.146 sum 13.145 -6.367 -17.203 22.567 Atomic orbital electron populations 1.71001 1.07200 1.28410 1.54191 1.27309 0.96422 1.04744 0.98712 0.83410 0.72610 0.71267 0.78813 1.16211 1.20907 1.24752 1.19987 0.83763 0.94572 1.45657 0.94402 1.44648 1.04762 1.10519 1.75247 1.22189 0.90562 0.90727 0.97115 1.22214 0.97515 0.94150 0.82209 0.86782 1.45391 1.58886 1.13262 1.15680 1.18207 0.78424 0.81896 0.86486 1.90761 1.43966 1.53416 1.57239 1.20826 1.06839 0.96837 0.95939 1.23466 0.87768 0.99344 0.88145 1.67872 1.19510 1.18518 1.14213 1.23893 0.87770 0.86461 1.00287 1.20946 1.06906 0.96950 0.96122 1.17944 0.77719 0.85939 0.82714 1.43467 1.61173 1.20210 1.13609 1.90852 1.43899 1.52152 1.59407 1.21812 0.89725 0.93994 0.94272 1.22952 0.91659 0.91587 0.89153 0.87196 1.86432 1.84191 1.28584 1.37225 1.22976 0.93285 0.91573 0.97714 0.94557 0.93196 0.95139 0.75188 0.80463 0.76956 0.74700 0.74829 0.84205 0.74664 0.92910 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.19 13.70 21.65 0.30 -60.90 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 1.11 49.85 24.53 68.60 1.68 51.53 16 4 H -0.24 -8.70 5.43 99.48 0.54 -8.16 16 5 H -0.28 -11.77 6.84 99.48 0.68 -11.09 16 6 H -0.32 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.31 -17.62 10.56 84.03 0.89 -16.73 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 N -0.62 -28.18 3.32 -691.55 -2.30 -30.48 16 10 C 0.12 4.68 6.95 86.93 0.60 5.28 16 11 C 0.15 4.49 3.31 46.46 0.15 4.64 16 12 H 0.11 3.38 7.54 -2.38 -0.02 3.36 16 13 N -0.68 -20.44 4.77 -438.44 -2.09 -22.53 16 14 C 0.56 17.97 7.78 86.79 0.68 18.65 16 15 O -0.57 -21.99 16.05 -3.90 -0.06 -22.05 16 16 C -0.20 -5.28 5.88 -20.03 -0.12 -5.40 16 17 C 0.17 3.78 10.71 85.05 0.91 4.69 16 18 N -0.49 -9.60 10.33 -193.70 -2.00 -11.60 16 19 C 0.17 2.46 10.71 85.04 0.91 3.37 16 20 C -0.20 -3.94 5.89 -20.02 -0.12 -4.06 16 21 C 0.57 10.79 8.05 86.79 0.70 11.49 16 22 N -0.82 -6.00 8.83 -175.61 -1.55 -7.55 16 23 O -0.58 -16.94 17.25 -3.86 -0.07 -17.01 16 24 C 0.03 0.76 9.25 23.00 0.21 0.97 16 25 C 0.11 2.81 4.12 31.78 0.13 2.94 16 26 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 27 O -0.56 -11.78 12.67 -148.98 -1.89 -13.66 16 28 C 0.07 2.46 4.38 86.73 0.38 2.84 16 29 H 0.25 15.82 8.73 -92.71 -0.81 15.01 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.41 11.23 6.44 -92.71 -0.60 10.64 16 33 H 0.18 3.47 6.41 -2.91 -0.02 3.45 16 34 H 0.21 0.65 6.41 -2.91 -0.02 0.64 16 35 H 0.42 -0.09 6.89 -92.71 -0.64 -0.73 16 36 H 0.42 2.09 8.93 -92.71 -0.83 1.26 16 37 H 0.14 4.21 7.40 -2.91 -0.02 4.19 16 38 H 0.40 4.98 9.11 -74.06 -0.67 4.31 16 39 H 0.05 1.93 6.69 -2.39 -0.02 1.91 16 40 H 0.04 1.33 3.81 -2.38 -0.01 1.32 16 Total: -1.00 -86.17 334.74 -3.99 -90.15 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -1.80 Total: 19.53 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 5.79 Total: 24.55 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -7.64 Total: -133.04 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -2.02 Total: -52.72 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 1.68 Total: 51.53 kcal Total: -86.17 -3.99 -90.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084067316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.180 kcal (2) G-P(sol) polarization free energy of solvation -86.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds