Wall clock time and date at job start Fri Apr 10 2020 18:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42108 * 108.57601 * 2 1 4 4 O 1.42095 * 108.58106 * 228.97574 * 2 1 3 5 5 C 1.81403 * 101.92214 * 114.48360 * 2 1 3 6 6 C 1.53001 * 109.46979 * 179.97438 * 5 2 1 7 7 C 1.50700 * 109.47021 * 180.02562 * 6 5 2 8 8 O 1.21284 * 119.99899 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00359 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00101 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46527 * 325.02457 * 10 9 7 12 12 C 1.53043 * 109.46319 * 85.00188 * 10 9 7 13 13 C 1.53189 * 109.31272 * 181.37032 * 12 10 9 14 14 N 1.46924 * 108.77872 * 305.36321 * 13 12 10 15 15 C 1.36938 * 120.63123 * 233.63555 * 14 13 12 16 16 H 1.08002 * 119.99871 * 27.66233 * 15 14 13 17 17 C 1.38807 * 120.00178 * 207.66651 * 15 14 13 18 18 N 1.31616 * 119.99904 * 17.35084 * 17 15 14 19 19 Si 1.86796 * 120.00288 * 197.36165 * 17 15 14 20 20 H 1.48495 * 109.47323 * 59.99341 * 19 17 15 21 21 H 1.48497 * 109.47189 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47062 * 299.99596 * 19 17 15 23 23 C 1.46918 * 118.73662 * 53.60504 * 14 13 12 24 24 C 1.53045 * 109.44867 * 205.06011 * 10 9 7 25 25 H 1.09005 * 109.49939 * 298.57066 * 24 10 9 26 26 O 1.42896 * 109.49640 * 58.66768 * 24 10 9 27 27 H 1.09002 * 109.47516 * 305.51312 * 1 2 3 28 28 H 1.09003 * 109.47248 * 65.51834 * 1 2 3 29 29 H 1.09003 * 109.46805 * 185.50996 * 1 2 3 30 30 H 1.09001 * 109.46641 * 60.00449 * 5 2 1 31 31 H 1.08992 * 109.47392 * 300.00204 * 5 2 1 32 32 H 1.09001 * 109.46929 * 60.00795 * 6 5 2 33 33 H 1.08992 * 109.47363 * 300.00391 * 6 5 2 34 34 H 0.97000 * 119.99538 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.49286 * 301.32133 * 12 10 9 36 36 H 1.08997 * 109.49929 * 61.41757 * 12 10 9 37 37 H 1.08998 * 109.58492 * 65.15072 * 13 12 10 38 38 H 1.09008 * 109.58490 * 185.57388 * 13 12 10 39 39 H 0.97002 * 120.00413 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58547 * 186.60567 * 23 14 13 41 41 H 1.08997 * 109.70422 * 66.25616 * 23 14 13 42 42 H 0.96697 * 113.99984 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7979 7 6 4.0168 -1.4311 3.1396 8 8 3.1143 -1.7673 3.8768 9 7 5.2979 -1.6046 3.5202 10 6 5.6005 -2.1997 4.8242 11 1 4.8515 -1.8837 5.5503 12 6 5.5831 -3.7253 4.7048 13 6 5.8661 -4.3441 6.0773 14 7 7.1267 -3.7937 6.5935 15 6 8.1365 -4.6247 6.9996 16 1 8.2340 -5.6085 6.5647 17 6 9.0347 -4.2028 7.9702 18 7 8.7386 -3.1765 8.7391 19 14 10.6637 -5.0914 8.1848 20 1 11.4393 -5.0154 6.9208 21 1 11.4367 -4.4505 9.2788 22 1 10.4101 -6.5145 8.5252 23 6 7.2836 -2.3346 6.6651 24 6 6.9847 -1.7383 5.2860 25 1 7.7373 -2.0753 4.5731 26 8 7.0093 -0.3118 5.3677 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9353 29 1 -0.3633 -1.0230 0.0987 30 1 1.7610 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4042 32 1 4.1335 0.1817 1.7466 33 1 4.1327 -1.4382 1.0090 34 1 6.0197 -1.3360 2.9304 35 1 4.6042 -4.0516 4.3534 36 1 6.3488 -4.0437 3.9974 37 1 5.0537 -4.1011 6.7621 38 1 5.9528 -5.4263 5.9793 39 1 9.3664 -2.8813 9.4171 40 1 8.3057 -2.0908 6.9550 41 1 6.5885 -1.9258 7.3984 42 1 7.8584 0.0511 5.6547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099892222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:50 Heat of formation + Delta-G solvation = -136.003825 kcal Electronic energy + Delta-G solvation = -25389.711064 eV Core-core repulsion = 21497.934148 eV Total energy + Delta-G solvation = -3891.776916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.90631 -38.00495 -37.32215 -36.38097 -35.30993 -34.43304 -33.42182 -32.14055 -30.07018 -29.54394 -28.90297 -25.94565 -24.49187 -22.45647 -21.76386 -20.27634 -19.47669 -19.22548 -17.73828 -16.99891 -16.69279 -16.64525 -16.44085 -16.06402 -15.82413 -15.54506 -14.87929 -14.13452 -13.88256 -13.84600 -13.69943 -13.60851 -13.54102 -13.25569 -12.86453 -12.64456 -12.42966 -12.33409 -12.24951 -12.06769 -11.74487 -11.70521 -11.45284 -11.26216 -10.97023 -10.84944 -10.83354 -10.46049 -10.26000 -10.05927 -9.94675 -9.58008 -9.38776 -8.82172 -8.56675 -6.82366 -5.90422 -3.34053 -0.41293 2.34294 2.68832 3.08213 3.31614 3.38079 3.38770 3.44098 3.64364 4.13162 4.35487 4.37435 4.38097 4.53241 4.61640 4.76533 5.11982 5.20914 5.22644 5.26552 5.35514 5.41678 5.47317 5.55451 5.86691 5.95294 6.05174 6.17542 6.38383 6.41453 6.65699 6.77661 6.86011 7.07659 7.41487 7.63855 7.69225 8.05642 8.30862 8.33222 9.07706 9.70517 10.26491 11.18045 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035664 B = 0.002444 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.919716 B =11453.626938 C =11656.616934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.939 6.939 4 O -0.940 6.940 5 C -0.593 4.593 6 C -0.135 4.135 7 C 0.519 3.481 8 O -0.542 6.542 9 N -0.714 5.714 10 C 0.161 3.839 11 H 0.088 0.912 12 C -0.140 4.140 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.148 3.852 24 C 0.072 3.928 25 H 0.052 0.948 26 O -0.573 6.573 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.061 0.939 39 H 0.256 0.744 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 6.658 -16.033 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.722 4.722 6 C -0.176 4.176 7 C 0.303 3.697 8 O -0.420 6.420 9 N -0.363 5.363 10 C 0.057 3.943 11 H 0.106 0.894 12 C -0.180 4.180 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.021 3.979 24 C 0.011 3.989 25 H 0.070 0.930 26 O -0.378 6.378 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.057 6.712 -16.202 21.864 hybrid contribution 1.160 -0.514 0.762 1.480 sum -11.897 6.199 -15.440 20.454 Atomic orbital electron populations 1.30244 1.26605 1.11782 1.11816 1.07807 0.78449 0.75793 0.77593 1.93612 1.79045 1.34485 1.86516 1.93607 1.79063 1.67000 1.54048 1.30119 1.04104 1.15157 1.22800 1.21359 0.93332 1.04555 0.98353 1.20136 0.83151 0.78632 0.87740 1.90693 1.45595 1.51080 1.54634 1.46100 1.07038 1.62851 1.20294 1.21026 0.96736 0.92889 0.83625 0.89369 1.22424 1.01071 0.93722 1.00786 1.20938 0.89078 0.96989 0.91181 1.43999 1.12163 1.01038 1.74081 1.19163 1.04787 0.98771 1.15940 0.91377 1.25077 1.00373 0.98708 0.95432 1.70017 1.35293 1.28611 1.20689 0.86335 0.83681 0.79259 0.77301 1.20970 1.21569 1.20745 1.21414 1.02850 0.83598 0.90052 1.22982 0.94999 0.80206 1.00749 0.92967 1.86405 1.39486 1.20784 1.91124 0.85173 0.85252 0.85187 0.84184 0.84159 0.87225 0.87319 0.76727 0.91832 0.91930 0.95859 0.92070 0.93388 0.88775 0.95244 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.26 10.62 101.05 1.07 -1.19 16 2 S 2.42 16.20 5.36 -107.50 -0.58 15.62 16 3 O -0.94 -9.78 18.10 -57.83 -1.05 -10.83 16 4 O -0.94 -9.67 18.10 -57.83 -1.05 -10.71 16 5 C -0.59 -4.29 5.09 37.16 0.19 -4.10 16 6 C -0.13 -1.26 5.71 -27.88 -0.16 -1.42 16 7 C 0.52 7.17 7.79 -10.99 -0.09 7.09 16 8 O -0.54 -9.35 15.64 5.55 0.09 -9.27 16 9 N -0.71 -10.04 4.92 -53.77 -0.26 -10.30 16 10 C 0.16 2.81 2.12 -67.89 -0.14 2.66 16 11 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 12 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 13 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 14 N -0.59 -14.17 2.99 -172.33 -0.52 -14.68 16 15 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -25.24 11.19 55.49 0.62 -24.62 16 19 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.15 3.35 4.94 -3.72 -0.02 3.33 16 24 C 0.07 1.30 3.14 -26.61 -0.08 1.21 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 O -0.57 -9.49 13.16 -35.23 -0.46 -9.95 16 27 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 28 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 31 H 0.14 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.61 8.60 -40.82 -0.35 4.26 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.22 7.93 -51.92 -0.41 0.81 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.38 4.98 9.08 45.56 0.41 5.40 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -37.37 359.48 -8.12 -45.50 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.67 Total: 6.93 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.37 Total: 1.04 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.16 Total: -49.61 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.47 Total: -40.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Atomic # 16 Polarization: 16.20 SS G_CDS: -0.58 Total: 15.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.37 -8.12 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099892222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.508 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds