Wall clock time and date at job start Fri Apr 10 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 108.57423 * 2 1 4 4 O 1.42099 * 108.57485 * 228.97827 * 2 1 3 5 5 C 1.81402 * 101.92208 * 114.48801 * 2 1 3 6 6 C 1.52997 * 109.46811 * 179.97438 * 5 2 1 7 7 C 1.50696 * 109.47059 * 180.02562 * 6 5 2 8 8 O 1.21284 * 120.00179 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00275 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99991 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46073 * 34.97784 * 10 9 7 12 12 C 1.53042 * 109.46101 * 275.00019 * 10 9 7 13 13 C 1.53195 * 109.31221 * 178.62715 * 12 10 9 14 14 N 1.46931 * 108.77268 * 54.64120 * 13 12 10 15 15 C 1.36932 * 120.63331 * 126.37097 * 14 13 12 16 16 H 1.08003 * 119.99591 * 332.44263 * 15 14 13 17 17 C 1.38809 * 120.00247 * 152.17596 * 15 14 13 18 18 N 1.31621 * 119.99786 * 343.15799 * 17 15 14 19 19 Si 1.86802 * 120.00004 * 163.16769 * 17 15 14 20 20 H 1.48505 * 109.47115 * 59.99777 * 19 17 15 21 21 H 1.48499 * 109.46750 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47060 * 299.99551 * 19 17 15 23 23 C 1.46931 * 118.73527 * 306.63721 * 14 13 12 24 24 C 1.52767 * 109.00631 * 53.31459 * 23 14 13 25 25 H 1.08996 * 109.55719 * 185.54870 * 24 23 14 26 26 O 1.42902 * 109.38406 * 65.51391 * 24 23 14 27 27 H 1.08994 * 109.47211 * 305.50662 * 1 2 3 28 28 H 1.08997 * 109.47314 * 65.51059 * 1 2 3 29 29 H 1.09005 * 109.46939 * 185.51389 * 1 2 3 30 30 H 1.08998 * 109.46606 * 60.00311 * 5 2 1 31 31 H 1.08995 * 109.47339 * 299.99991 * 5 2 1 32 32 H 1.09005 * 109.47109 * 60.00410 * 6 5 2 33 33 H 1.09003 * 109.47589 * 300.00040 * 6 5 2 34 34 H 0.96999 * 120.00359 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.49663 * 58.68293 * 12 10 9 36 36 H 1.09002 * 109.52556 * 298.59505 * 12 10 9 37 37 H 1.08990 * 109.58858 * 294.85463 * 13 12 10 38 38 H 1.08998 * 109.58864 * 174.42129 * 13 12 10 39 39 H 0.97000 * 119.99951 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58466 * 173.14446 * 23 14 13 41 41 H 1.08995 * 109.58659 * 293.56937 * 23 14 13 42 42 H 0.96701 * 114.00210 * 60.14602 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7978 7 6 4.0169 -1.4313 3.1394 8 8 3.1145 -1.7676 3.8767 9 7 5.2981 -1.6057 3.5195 10 6 5.6007 -2.1999 4.8239 11 1 4.8513 -2.9547 5.0618 12 6 5.5844 -1.1091 5.8973 13 6 5.8673 -1.7394 7.2646 14 7 7.1275 -2.4909 7.1871 15 6 8.1377 -2.2531 8.0805 16 1 8.2349 -1.2801 8.5393 17 6 9.0334 -3.2640 8.4007 18 7 8.7387 -4.5165 8.1235 19 14 10.6569 -2.8469 9.2251 20 1 10.3946 -2.1754 10.5235 21 1 11.4275 -4.0943 9.4603 22 1 11.4389 -1.9394 8.3476 23 6 7.2855 -3.4982 6.1292 24 6 6.9845 -2.8520 4.7780 25 1 7.0025 -3.6128 3.9977 26 8 7.9715 -1.8574 4.4975 27 1 -0.3633 0.5968 0.8365 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0230 0.0988 30 1 1.7611 -1.7370 1.6663 31 1 1.7611 -0.1172 2.4042 32 1 4.1335 0.1816 1.7465 33 1 4.1329 -1.4384 1.0088 34 1 6.0199 -1.3371 2.9297 35 1 4.6058 -0.6293 5.9134 36 1 6.3502 -0.3664 5.6736 37 1 5.0547 -2.4152 7.5306 38 1 5.9549 -0.9558 8.0171 39 1 9.3645 -5.2230 8.3475 40 1 8.3084 -3.8746 6.1329 41 1 6.5908 -4.3203 6.3009 42 1 8.8744 -2.2008 4.4536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099892224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:54 Heat of formation + Delta-G solvation = -133.775996 kcal Electronic energy + Delta-G solvation = -25489.917939 eV Core-core repulsion = 21598.237629 eV Total energy + Delta-G solvation = -3891.680310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93226 -38.06673 -37.33562 -36.39385 -34.82778 -34.40602 -33.44467 -32.05542 -30.07967 -29.47076 -29.12329 -25.93605 -24.45465 -22.40668 -21.79180 -20.22399 -19.40752 -19.23816 -17.74004 -17.23386 -16.68817 -16.50993 -16.21420 -15.89744 -15.58128 -15.47487 -14.96242 -14.11649 -13.98610 -13.81753 -13.75984 -13.61389 -13.58447 -13.21858 -12.84298 -12.77756 -12.44149 -12.34625 -12.17810 -12.04929 -11.78895 -11.46554 -11.29552 -11.19440 -10.98162 -10.81837 -10.62513 -10.51368 -10.24170 -10.09386 -9.87377 -9.65280 -9.22726 -8.76706 -8.52933 -6.71734 -5.84568 -3.25453 -0.42705 2.32932 2.64700 3.06957 3.35220 3.41258 3.42890 3.43504 3.62968 4.11170 4.33708 4.36464 4.45336 4.59932 4.68056 4.82722 5.10071 5.18858 5.21474 5.27296 5.37065 5.42023 5.45391 5.53261 5.90235 6.00868 6.17658 6.22374 6.41246 6.50765 6.74985 6.79603 6.94010 7.12882 7.39076 7.64719 7.74977 8.19975 8.29754 8.39749 9.14813 9.77794 10.34503 11.24398 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.039469 B = 0.002431 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.247180 B =11514.250702 C =11640.229124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.939 6.939 4 O -0.940 6.940 5 C -0.593 4.593 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.543 6.543 9 N -0.716 5.716 10 C 0.161 3.839 11 H 0.091 0.909 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.244 4.244 16 H 0.065 0.935 17 C -0.001 4.001 18 N -0.908 5.908 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.145 3.855 24 C 0.073 3.927 25 H 0.044 0.956 26 O -0.560 6.560 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.404 0.596 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 6.375 -16.261 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.722 4.722 6 C -0.176 4.176 7 C 0.301 3.699 8 O -0.421 6.421 9 N -0.367 5.367 10 C 0.057 3.943 11 H 0.109 0.891 12 C -0.177 4.177 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.374 4.374 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.018 3.982 24 C 0.012 3.988 25 H 0.062 0.938 26 O -0.366 6.366 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.238 0.762 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.045 0.955 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.642 6.663 -16.326 22.294 hybrid contribution 1.026 -0.459 0.809 1.385 sum -12.616 6.204 -15.517 20.938 Atomic orbital electron populations 1.30244 1.26596 1.11778 1.11822 1.07810 0.78453 0.75793 0.77590 1.93612 1.79047 1.34478 1.86507 1.93608 1.79067 1.67001 1.54027 1.30120 1.04083 1.15162 1.22831 1.21364 0.93332 1.04561 0.98374 1.20192 0.83213 0.78820 0.87700 1.90696 1.45628 1.50853 1.54875 1.46215 1.07040 1.63033 1.20372 1.21045 0.95390 0.95983 0.81832 0.89132 1.22310 1.00567 0.98218 0.96604 1.20891 0.88826 0.94675 0.93470 1.43858 1.12111 1.43230 1.31283 1.19140 1.04745 0.94987 1.18496 0.91700 1.25025 1.00371 0.94829 0.99640 1.70007 1.35428 0.98264 1.51572 0.86341 0.83824 0.76988 0.79454 1.20907 1.21722 1.21022 1.21355 1.02830 0.90202 0.83812 1.22768 0.87312 0.89618 0.99135 0.93821 1.86341 1.18834 1.37292 1.94106 0.85177 0.85247 0.85190 0.84186 0.84157 0.87222 0.87295 0.76172 0.92925 0.91127 0.96266 0.92423 0.93568 0.88592 0.95510 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.16 10.62 101.05 1.07 -1.08 16 2 S 2.42 15.77 5.36 -107.50 -0.58 15.19 16 3 O -0.94 -9.64 18.10 -57.83 -1.05 -10.69 16 4 O -0.94 -9.52 18.10 -57.83 -1.05 -10.57 16 5 C -0.59 -4.12 5.09 37.16 0.19 -3.93 16 6 C -0.14 -1.23 5.71 -27.89 -0.16 -1.39 16 7 C 0.52 6.92 7.79 -10.99 -0.09 6.84 16 8 O -0.54 -9.08 15.64 5.55 0.09 -8.99 16 9 N -0.72 -9.92 5.05 -53.77 -0.27 -10.19 16 10 C 0.16 2.76 2.20 -67.89 -0.15 2.61 16 11 H 0.09 1.68 7.57 -51.93 -0.39 1.29 16 12 C -0.14 -2.53 5.51 -26.61 -0.15 -2.67 16 13 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 14 N -0.58 -14.15 2.94 -172.58 -0.51 -14.65 16 15 C -0.24 -6.52 9.58 -15.06 -0.14 -6.67 16 16 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 17 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 18 N -0.91 -25.42 11.18 55.49 0.62 -24.80 16 19 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.15 3.24 4.91 -3.93 -0.02 3.22 16 24 C 0.07 1.28 3.37 -26.83 -0.09 1.19 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 O -0.56 -9.60 12.08 -35.23 -0.43 -10.02 16 27 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 30 H 0.14 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.14 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.80 8.25 -40.82 -0.34 4.47 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.10 2.35 6.05 -51.93 -0.31 2.04 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.38 5.60 9.08 45.56 0.41 6.02 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -37.13 357.77 -8.08 -45.21 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.63 Total: 6.83 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 0.36 Total: 1.14 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.16 Total: -49.65 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.43 Total: -40.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 15.77 SS G_CDS: -0.58 Total: 15.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.13 -8.08 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099892224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.562 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds