Wall clock time and date at job start Fri Apr 10 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81405 * 109.46947 * 2 1 4 4 O 1.42101 * 108.57899 * 65.51412 * 3 2 1 5 5 O 1.42096 * 108.57820 * 294.48512 * 3 2 1 6 6 C 1.81407 * 101.91821 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.46796 * 179.97438 * 6 3 2 8 8 O 1.21275 * 120.00132 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99831 * 179.97438 * 7 6 3 10 10 C 1.46494 * 120.00316 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.45829 * 325.03266 * 10 9 7 12 12 C 1.53048 * 109.46039 * 84.99795 * 10 9 7 13 13 C 1.53189 * 109.31088 * 181.37401 * 12 10 9 14 14 N 1.46926 * 108.77819 * 305.36671 * 13 12 10 15 15 C 1.36939 * 120.63281 * 233.63158 * 14 13 12 16 16 H 1.08000 * 119.99449 * 27.66000 * 15 14 13 17 17 C 1.38807 * 120.00388 * 207.66418 * 15 14 13 18 18 N 1.31616 * 119.99904 * 17.36427 * 17 15 14 19 19 Si 1.86796 * 120.00288 * 197.37508 * 17 15 14 20 20 H 1.48504 * 109.47005 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47602 * 119.99199 * 19 17 15 22 22 H 1.48505 * 109.47059 * 239.99731 * 19 17 15 23 23 C 1.46922 * 118.73992 * 53.61027 * 14 13 12 24 24 C 1.53039 * 109.45213 * 205.06287 * 10 9 7 25 25 H 1.09000 * 109.49555 * 298.56979 * 24 10 9 26 26 O 1.42898 * 109.49537 * 58.66981 * 24 10 9 27 27 H 1.08998 * 109.47037 * 300.00141 * 1 2 3 28 28 H 1.08998 * 109.46972 * 59.99980 * 1 2 3 29 29 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47037 * 239.99859 * 2 1 3 31 31 H 1.08998 * 109.46972 * 120.00020 * 2 1 3 32 32 H 1.08998 * 109.47220 * 60.00047 * 6 3 2 33 33 H 1.08995 * 109.47020 * 299.99869 * 6 3 2 34 34 H 0.97005 * 119.99797 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.49608 * 301.32893 * 12 10 9 36 36 H 1.09007 * 109.49279 * 61.42576 * 12 10 9 37 37 H 1.09000 * 109.58643 * 65.15597 * 13 12 10 38 38 H 1.09010 * 109.58734 * 185.58049 * 13 12 10 39 39 H 0.97002 * 120.00413 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.58749 * 186.60256 * 23 14 13 41 41 H 1.09006 * 109.70218 * 66.24893 * 23 14 13 42 42 H 0.96703 * 113.99358 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9330 1.4719 -0.0008 7 6 4.6176 2.8145 -0.0015 8 8 3.9575 3.8318 -0.0010 9 7 5.9635 2.8845 -0.0017 10 6 6.6292 4.1895 -0.0018 11 1 6.0438 4.8956 -0.5908 12 6 6.7489 4.7009 1.4357 13 6 7.4143 6.0808 1.4287 14 7 8.6943 5.9850 0.7137 15 6 9.8553 6.4119 1.3011 16 1 9.9526 6.3991 2.3766 17 6 10.9069 6.8610 0.5143 18 7 10.6923 7.2021 -0.7387 19 14 12.6266 6.9812 1.2335 20 1 12.6016 6.5424 2.6521 21 1 13.5482 6.1094 0.4616 22 1 13.0971 8.3878 1.1591 23 6 8.7050 5.4220 -0.6434 24 6 8.0251 4.0495 -0.6132 25 1 8.6190 3.3625 -0.0104 26 8 7.9139 3.5430 -1.9448 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2253 0.9150 -0.8910 33 1 4.2260 0.9147 0.8890 34 1 6.4915 2.0707 -0.0017 35 1 5.7558 4.7781 1.8783 36 1 7.3549 4.0077 2.0191 37 1 6.7660 6.7965 0.9232 38 1 7.5919 6.4061 2.4539 39 1 11.4273 7.5157 -1.2887 40 1 9.7341 5.3127 -0.9855 41 1 8.1634 6.0833 -1.3198 42 1 8.7625 3.4291 -2.3943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100126183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:01 Heat of formation + Delta-G solvation = -132.322474 kcal Electronic energy + Delta-G solvation = -25761.518176 eV Core-core repulsion = 21869.900896 eV Total energy + Delta-G solvation = -3891.617280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -39.98316 -38.01831 -37.11391 -36.13259 -35.32781 -34.53218 -33.54298 -32.40014 -30.90866 -29.21157 -28.77601 -25.20395 -24.42453 -22.59575 -21.92168 -20.57873 -19.59557 -18.99655 -17.67433 -17.28559 -16.78084 -16.60724 -16.55428 -16.17517 -15.53340 -15.35486 -14.82506 -14.57273 -14.10991 -13.83815 -13.64562 -13.52114 -13.43311 -13.02980 -12.90220 -12.65808 -12.25483 -12.16323 -12.11414 -12.01923 -11.96390 -11.72846 -11.35513 -11.21572 -10.88646 -10.82507 -10.74971 -10.47238 -10.27503 -10.21913 -10.03703 -9.62719 -9.43486 -8.92405 -8.58328 -6.82265 -5.90397 -3.33878 -0.37590 2.45619 2.50019 2.93467 3.29662 3.38533 3.40519 3.61276 3.72645 4.21526 4.24126 4.34572 4.39897 4.56000 4.65170 4.77399 4.85402 5.18761 5.21649 5.25504 5.32566 5.39908 5.52586 5.52846 5.85342 5.94530 6.02635 6.12605 6.36675 6.40989 6.65780 6.70341 6.87327 7.07243 7.37585 7.47061 7.69774 8.02049 8.10528 8.32332 9.07752 9.70538 10.26600 11.18154 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.002716 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.051464 B =10306.203997 C =10561.895600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.623 4.623 3 S 2.452 3.548 4 O -0.919 6.919 5 O -0.918 6.918 6 C -0.661 4.661 7 C 0.538 3.462 8 O -0.532 6.532 9 N -0.701 5.701 10 C 0.158 3.842 11 H 0.093 0.907 12 C -0.142 4.142 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.148 3.852 24 C 0.072 3.928 25 H 0.053 0.947 26 O -0.573 6.573 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.255 0.745 40 H 0.095 0.905 41 H 0.031 0.969 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -19.092 0.660 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.751 4.751 3 S 2.628 3.372 4 O -0.916 6.916 5 O -0.915 6.915 6 C -0.788 4.788 7 C 0.321 3.679 8 O -0.409 6.409 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.111 0.889 12 C -0.182 4.182 13 C 0.017 3.983 14 N -0.313 5.313 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.020 3.980 24 C 0.011 3.989 25 H 0.071 0.929 26 O -0.378 6.378 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.563 -17.484 0.695 22.766 hybrid contribution 2.493 -1.335 0.116 2.830 sum -12.070 -18.819 0.810 22.372 Atomic orbital electron populations 1.21512 0.90162 1.04833 1.04027 1.30358 1.07815 1.25467 1.11488 1.07501 0.76477 0.77338 0.75889 1.93586 1.79849 1.72372 1.45793 1.93589 1.79834 1.72349 1.45772 1.30880 1.28655 1.06103 1.13168 1.19040 0.83620 0.88128 0.77082 1.90866 1.64189 1.35805 1.50059 1.45976 1.05309 1.10492 1.73245 1.21158 0.92401 0.83686 0.97350 0.88911 1.22452 1.00900 1.00209 0.94636 1.20952 0.87848 0.92387 0.97068 1.44030 1.02519 1.70654 1.14122 1.19249 0.90658 1.36921 0.91631 0.91256 1.25084 0.99501 0.98480 0.96616 1.70037 1.30756 1.46188 1.07588 0.86204 0.84465 0.77432 0.78568 1.20181 1.21533 1.21591 1.21425 1.01000 0.88356 0.87184 1.22987 0.94674 0.98856 0.82348 0.92924 1.86409 1.35303 1.87572 1.28540 0.90663 0.90651 0.90047 0.84953 0.84975 0.82415 0.82498 0.76570 0.91480 0.91867 0.95625 0.91921 0.93493 0.88697 0.95091 0.77622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.62 -3.10 6.53 37.16 0.24 -2.86 16 3 S 2.45 25.45 3.96 -107.50 -0.43 25.02 16 4 O -0.92 -13.19 17.95 -59.51 -1.07 -14.26 16 5 O -0.92 -13.45 17.94 -59.54 -1.07 -14.52 16 6 C -0.66 -5.55 6.29 36.01 0.23 -5.32 16 7 C 0.54 7.99 7.81 -10.99 -0.09 7.91 16 8 O -0.53 -10.38 15.28 2.56 0.04 -10.34 16 9 N -0.70 -10.02 4.92 -53.77 -0.26 -10.28 16 10 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 11 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 12 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 13 C 0.14 3.03 6.52 -3.71 -0.02 3.00 16 14 N -0.59 -14.26 2.99 -172.32 -0.52 -14.77 16 15 C -0.26 -6.74 9.58 -15.06 -0.14 -6.88 16 16 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -25.29 11.19 55.49 0.62 -24.67 16 19 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.15 3.35 4.94 -3.71 -0.02 3.33 16 24 C 0.07 1.31 3.14 -26.61 -0.08 1.22 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -9.42 13.16 -35.23 -0.46 -9.88 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.16 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.16 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 4.41 8.60 -40.82 -0.35 4.06 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.27 7.93 -51.92 -0.41 0.85 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.09 2.35 6.03 -51.93 -0.31 2.03 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.38 4.90 9.08 45.56 0.41 5.32 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -38.28 358.84 -8.34 -46.62 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.68 Total: 5.95 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 0.10 Total: -0.12 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.16 Total: -49.73 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.56 Total: -49.00 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Atomic # 16 Polarization: 25.45 SS G_CDS: -0.43 Total: 25.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.28 -8.34 -46.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.702 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds