Wall clock time and date at job start Fri Apr 10 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81405 * 109.46947 * 2 1 4 4 O 1.42101 * 108.57899 * 65.51412 * 3 2 1 5 5 O 1.42096 * 108.57820 * 294.48512 * 3 2 1 6 6 C 1.81407 * 101.91821 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.46796 * 179.97438 * 6 3 2 8 8 O 1.21275 * 120.00132 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99831 * 179.97438 * 7 6 3 10 10 C 1.46494 * 120.00316 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.45829 * 325.03266 * 10 9 7 12 12 C 1.53048 * 109.46039 * 84.99795 * 10 9 7 13 13 C 1.53189 * 109.31088 * 181.37401 * 12 10 9 14 14 N 1.46926 * 108.77819 * 305.36671 * 13 12 10 15 15 C 1.36939 * 120.63281 * 233.63158 * 14 13 12 16 16 H 1.08000 * 119.99449 * 27.66000 * 15 14 13 17 17 C 1.38807 * 120.00388 * 207.66418 * 15 14 13 18 18 N 1.31616 * 119.99904 * 17.36427 * 17 15 14 19 19 Si 1.86796 * 120.00288 * 197.37508 * 17 15 14 20 20 H 1.48504 * 109.47005 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47602 * 119.99199 * 19 17 15 22 22 H 1.48505 * 109.47059 * 239.99731 * 19 17 15 23 23 C 1.46922 * 118.73992 * 53.61027 * 14 13 12 24 24 C 1.53039 * 109.45213 * 205.06287 * 10 9 7 25 25 H 1.09000 * 109.49555 * 298.56979 * 24 10 9 26 26 O 1.42898 * 109.49537 * 58.66981 * 24 10 9 27 27 H 1.08998 * 109.47037 * 300.00141 * 1 2 3 28 28 H 1.08998 * 109.46972 * 59.99980 * 1 2 3 29 29 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47037 * 239.99859 * 2 1 3 31 31 H 1.08998 * 109.46972 * 120.00020 * 2 1 3 32 32 H 1.08998 * 109.47220 * 60.00047 * 6 3 2 33 33 H 1.08995 * 109.47020 * 299.99869 * 6 3 2 34 34 H 0.97005 * 119.99797 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.49608 * 301.32893 * 12 10 9 36 36 H 1.09007 * 109.49279 * 61.42576 * 12 10 9 37 37 H 1.09000 * 109.58643 * 65.15597 * 13 12 10 38 38 H 1.09010 * 109.58734 * 185.58049 * 13 12 10 39 39 H 0.97002 * 120.00413 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.58749 * 186.60256 * 23 14 13 41 41 H 1.09006 * 109.70218 * 66.24893 * 23 14 13 42 42 H 0.96703 * 113.99358 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9330 1.4719 -0.0008 7 6 4.6176 2.8145 -0.0015 8 8 3.9575 3.8318 -0.0010 9 7 5.9635 2.8845 -0.0017 10 6 6.6292 4.1895 -0.0018 11 1 6.0438 4.8956 -0.5908 12 6 6.7489 4.7009 1.4357 13 6 7.4143 6.0808 1.4287 14 7 8.6943 5.9850 0.7137 15 6 9.8553 6.4119 1.3011 16 1 9.9526 6.3991 2.3766 17 6 10.9069 6.8610 0.5143 18 7 10.6923 7.2021 -0.7387 19 14 12.6266 6.9812 1.2335 20 1 12.6016 6.5424 2.6521 21 1 13.5482 6.1094 0.4616 22 1 13.0971 8.3878 1.1591 23 6 8.7050 5.4220 -0.6434 24 6 8.0251 4.0495 -0.6132 25 1 8.6190 3.3625 -0.0104 26 8 7.9139 3.5430 -1.9448 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2253 0.9150 -0.8910 33 1 4.2260 0.9147 0.8890 34 1 6.4915 2.0707 -0.0017 35 1 5.7558 4.7781 1.8783 36 1 7.3549 4.0077 2.0191 37 1 6.7660 6.7965 0.9232 38 1 7.5919 6.4061 2.4539 39 1 11.4273 7.5157 -1.2887 40 1 9.7341 5.3127 -0.9855 41 1 8.1634 6.0833 -1.3198 42 1 8.7625 3.4291 -2.3943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100126183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:59 Heat of formation + Delta-G solvation = -167.180028 kcal Electronic energy + Delta-G solvation = -25763.029713 eV Core-core repulsion = 21869.900896 eV Total energy + Delta-G solvation = -3893.128817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.26177 -39.52548 -37.98768 -36.99719 -36.91984 -35.96653 -34.12386 -33.94522 -32.15203 -30.77867 -30.26770 -26.98017 -25.01072 -24.20748 -23.53376 -21.81226 -21.20330 -19.78666 -19.07379 -18.42512 -18.14590 -17.98172 -17.35663 -17.20891 -16.84955 -16.42748 -16.24921 -15.64365 -15.50776 -15.19863 -15.07524 -14.88619 -14.51579 -13.97760 -13.95351 -13.78181 -13.44515 -13.38017 -13.36677 -13.09333 -13.07231 -13.00222 -12.70111 -12.55903 -12.32824 -12.14171 -12.05996 -12.01270 -11.90028 -11.57996 -11.34297 -11.16244 -10.96212 -10.63512 -10.20646 -8.79485 -7.92502 -5.39957 -1.07185 1.36777 1.46936 1.49815 1.60351 1.82297 1.91590 2.48529 2.86441 3.07758 3.09501 3.24618 3.50247 3.59425 3.78540 3.85506 3.90725 4.01119 4.10447 4.27445 4.30607 4.37796 4.42573 4.46329 4.65925 4.77685 4.82945 4.88304 4.89866 5.00885 5.12548 5.16767 5.28774 5.34066 5.53872 5.62657 6.30131 6.32834 6.80309 7.04430 7.08037 7.74992 8.28315 9.14578 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.002716 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.051464 B =10306.203997 C =10561.895600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.579 4.579 3 S 2.422 3.578 4 O -0.979 6.979 5 O -0.983 6.983 6 C -0.643 4.643 7 C 0.522 3.478 8 O -0.589 6.589 9 N -0.689 5.689 10 C 0.162 3.838 11 H 0.054 0.946 12 C -0.126 4.126 13 C 0.140 3.860 14 N -0.604 5.604 15 C -0.265 4.265 16 H 0.074 0.926 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.297 1.297 23 C 0.154 3.846 24 C 0.094 3.906 25 H 0.074 0.926 26 O -0.573 6.573 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.204 0.796 33 H 0.209 0.791 34 H 0.421 0.579 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.252 0.748 40 H 0.074 0.926 41 H -0.008 1.008 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -23.659 1.656 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.712 4.712 3 S 2.607 3.393 4 O -0.976 6.976 5 O -0.980 6.980 6 C -0.771 4.771 7 C 0.309 3.691 8 O -0.471 6.471 9 N -0.340 5.340 10 C 0.057 3.943 11 H 0.072 0.928 12 C -0.166 4.166 13 C 0.014 3.986 14 N -0.329 5.329 15 C -0.394 4.394 16 H 0.091 0.909 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.224 1.224 23 C 0.027 3.973 24 C 0.033 3.967 25 H 0.092 0.908 26 O -0.380 6.380 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.190 0.810 31 H 0.191 0.809 32 H 0.222 0.778 33 H 0.226 0.774 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.023 0.977 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.010 0.990 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.958 -22.051 1.696 26.152 hybrid contribution 2.233 0.044 -0.227 2.245 sum -11.724 -22.008 1.468 24.979 Atomic orbital electron populations 1.21737 0.90918 1.06446 1.03355 1.30035 1.06857 1.18819 1.15515 1.07896 0.77442 0.80236 0.73764 1.93514 1.81077 1.75905 1.47090 1.93515 1.81153 1.75986 1.47312 1.30767 1.25596 1.02818 1.17916 1.20106 0.83424 0.90086 0.75523 1.90858 1.65323 1.38691 1.52192 1.45708 1.05563 1.09709 1.72971 1.20780 0.91938 0.85074 0.96552 0.92764 1.22235 1.00844 0.98409 0.95089 1.21046 0.86670 0.94184 0.96710 1.44278 1.03043 1.71051 1.14511 1.19592 0.91445 1.36364 0.92026 0.90851 1.25862 1.03026 0.98588 0.97003 1.70200 1.31533 1.47527 1.08925 0.85152 0.79800 0.76728 0.78386 1.18870 1.21189 1.22383 1.21251 0.99672 0.90393 0.85939 1.22528 0.94438 0.96138 0.83557 0.90825 1.86388 1.36808 1.86955 1.27886 0.91520 0.91651 0.86954 0.81050 0.80862 0.77843 0.77358 0.74112 0.91227 0.89902 0.97663 0.91298 0.93883 0.90791 0.98968 0.75694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.92 71.98 0.71 -0.72 16 2 C -0.58 -2.94 6.53 71.98 0.47 -2.47 16 3 S 2.42 47.28 3.96 -56.49 -0.22 47.06 16 4 O -0.98 -28.74 17.95 -125.76 -2.26 -31.00 16 5 O -0.98 -29.76 17.94 -125.73 -2.26 -32.01 16 6 C -0.64 -8.23 6.29 71.24 0.45 -7.78 16 7 C 0.52 14.79 7.81 87.66 0.68 15.47 16 8 O -0.59 -23.84 15.28 -0.14 0.00 -23.84 16 9 N -0.69 -18.17 4.92 -442.41 -2.18 -20.34 16 10 C 0.16 5.74 2.12 45.02 0.10 5.84 16 11 H 0.05 2.36 7.58 -2.38 -0.02 2.34 16 12 C -0.13 -4.44 5.65 30.67 0.17 -4.27 16 13 C 0.14 6.02 6.52 86.36 0.56 6.58 16 14 N -0.60 -29.82 2.99 -699.08 -2.09 -31.92 16 15 C -0.26 -14.04 9.58 84.03 0.81 -13.23 16 16 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 17 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 18 N -0.94 -53.96 11.19 21.65 0.24 -53.71 16 19 Si 0.97 43.05 29.59 68.60 2.03 45.08 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 23 C 0.15 7.24 4.94 86.36 0.43 7.66 16 24 C 0.09 3.34 3.14 30.67 0.10 3.44 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 O -0.57 -18.09 13.16 -148.98 -1.96 -20.05 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.17 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.20 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.21 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.42 7.52 8.60 -92.70 -0.80 6.72 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.07 2.82 7.93 -2.38 -0.02 2.80 16 39 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.07 3.76 6.03 -2.39 -0.01 3.75 16 41 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.39 9.63 9.08 -74.06 -0.67 8.95 16 Total: -1.00 -92.17 358.84 -4.23 -96.40 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.43 Total: 16.06 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 4.89 Total: 8.28 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.03 Total: -105.97 kcal Atomic # 8 Polarization: -100.43 SS G_CDS: -6.48 Total: -106.91 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.22 Total: 47.06 kcal Total: -92.17 -4.23 -96.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.783 kcal (2) G-P(sol) polarization free energy of solvation -92.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds