Wall clock time and date at job start Fri Apr 10 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00255 * 2 1 4 4 C 1.53005 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47016 * 60.39436 * 4 3 2 6 6 C 1.46904 * 110.99683 * 183.42799 * 5 4 3 7 7 C 1.50703 * 109.47083 * 163.74760 * 6 5 4 8 8 O 1.21290 * 120.00142 * 354.25318 * 7 6 5 9 9 N 1.34780 * 119.99816 * 174.25590 * 7 6 5 10 10 C 1.37096 * 119.99769 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00161 * 359.72188 * 10 9 7 12 12 C 1.38953 * 119.99749 * 179.72280 * 10 9 7 13 13 N 1.31410 * 120.00193 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99620 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46918 * 90.00544 * 14 12 10 16 16 H 1.48505 * 109.46714 * 209.99901 * 14 12 10 17 17 H 1.48500 * 109.47416 * 329.99992 * 14 12 10 18 18 C 1.46894 * 111.00361 * 59.47393 * 5 4 3 19 19 H 1.08998 * 109.64849 * 150.38373 * 18 5 4 20 20 C 1.53878 * 109.64816 * 270.68320 * 18 5 4 21 21 C 1.55046 * 106.62648 * 167.03079 * 20 18 5 22 22 S 1.83288 * 102.56513 * 317.56438 * 21 20 18 23 23 O 1.42099 * 109.35593 * 269.81206 * 22 21 20 24 24 O 1.42103 * 109.47273 * 136.64504 * 22 21 20 25 25 C 1.54168 * 109.64578 * 29.95619 * 18 5 4 26 26 H 1.08995 * 109.47295 * 59.99577 * 1 2 3 27 27 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46722 * 299.99703 * 1 2 3 29 29 H 1.08999 * 109.47072 * 60.00297 * 3 2 1 30 30 H 1.09000 * 109.47081 * 300.00107 * 3 2 1 31 31 H 1.09002 * 109.46506 * 300.39726 * 4 3 2 32 32 H 1.08993 * 109.46758 * 180.39667 * 4 3 2 33 33 H 1.08999 * 109.47118 * 43.74752 * 6 5 4 34 34 H 1.08999 * 109.47224 * 283.74253 * 6 5 4 35 35 H 0.97000 * 120.00245 * 359.71658 * 9 7 6 36 36 H 0.97001 * 119.99994 * 179.97438 * 13 12 10 37 37 H 1.09009 * 110.02582 * 286.32137 * 20 18 5 38 38 H 1.08999 * 110.02508 * 47.73465 * 20 18 5 39 39 H 1.08999 * 110.79361 * 199.29555 * 21 20 18 40 40 H 1.09003 * 110.78675 * 75.83177 * 21 20 18 41 41 H 1.08999 * 110.31417 * 331.14379 * 25 18 5 42 42 H 1.08997 * 110.32196 * 93.33689 * 25 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9691 0.4641 -1.2051 6 6 5.4235 0.2575 -1.1999 7 6 5.7839 -0.8023 -2.2088 8 8 4.9091 -1.4069 -2.7921 9 7 7.0785 -1.0785 -2.4629 10 6 7.4063 -2.0423 -3.3811 11 1 6.6273 -2.5834 -3.8975 12 6 8.7409 -2.3230 -3.6472 13 7 9.6888 -1.6642 -3.0191 14 14 9.1877 -3.6368 -4.8978 15 1 9.3070 -3.0194 -6.2431 16 1 10.4830 -4.2581 -4.5217 17 1 8.1283 -4.6771 -4.9227 18 6 3.5416 1.1674 -2.4218 19 1 4.2508 0.9724 -3.2262 20 6 2.1436 0.6774 -2.8384 21 6 1.6235 1.6752 -3.9051 22 16 2.1139 3.2973 -3.2065 23 8 1.0649 3.7933 -2.3862 24 8 2.6526 4.1137 -4.2373 25 6 3.4728 2.6829 -2.1474 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8569 0.6374 0.8856 32 1 3.9788 2.1803 0.0065 33 1 5.7416 -0.0623 -0.2076 34 1 5.9240 1.1906 -1.4588 35 1 7.7782 -0.5922 -1.9994 36 1 10.6205 -1.8604 -3.2047 37 1 2.2106 -0.3236 -3.2648 38 1 1.4775 0.6723 -1.9757 39 1 0.5400 1.6076 -4.0025 40 1 2.1108 1.5042 -4.8650 41 1 3.2472 2.8674 -1.0971 42 1 4.4130 3.1605 -2.4230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116393490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:18 Heat of formation + Delta-G solvation = -110.625080 kcal Electronic energy + Delta-G solvation = -26663.935964 eV Core-core repulsion = 22773.259553 eV Total energy + Delta-G solvation = -3890.676411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97917 -38.02986 -37.14940 -36.92834 -36.14379 -34.07428 -33.75317 -31.26878 -30.44559 -29.49011 -26.77179 -26.32315 -25.04569 -23.91910 -22.02307 -20.41488 -19.24475 -18.95449 -17.95075 -17.54854 -17.17133 -16.45877 -16.00009 -15.86608 -15.57537 -15.17402 -14.91538 -14.61201 -14.46825 -14.17724 -14.00607 -13.73835 -13.47205 -12.97932 -12.70769 -12.53586 -12.30768 -12.18867 -12.15730 -12.09891 -11.84747 -11.60831 -11.52786 -11.35376 -11.08848 -10.97617 -10.72397 -10.63412 -10.40763 -10.28231 -10.23192 -9.67607 -9.50753 -8.53324 -8.02155 -7.97332 -6.43302 -3.84029 -0.08587 2.37984 3.16622 3.25678 3.31039 3.41998 3.61245 3.74171 3.87286 3.90182 4.18713 4.33428 4.56926 4.63255 4.69347 4.85825 4.92814 4.99667 5.07464 5.18531 5.22321 5.24640 5.28826 5.32550 5.42888 5.50572 5.58724 5.64682 5.73486 5.78207 5.81512 6.05262 6.24657 6.31356 7.00758 7.06455 7.21662 7.53698 8.04385 8.60040 9.16807 9.52820 10.04351 10.74461 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.003791 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.944953 B = 7384.631594 C = 8151.673442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.362 6.362 3 C 0.050 3.950 4 C 0.043 3.957 5 N -0.484 5.484 6 C 0.041 3.959 7 C 0.442 3.558 8 O -0.572 6.572 9 N -0.566 5.566 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.103 3.897 19 H 0.106 0.894 20 C -0.117 4.117 21 C -0.584 4.584 22 S 2.381 3.619 23 O -0.943 6.943 24 O -0.942 6.942 25 C -0.654 4.654 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.152 0.848 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 9.005 5.758 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.280 6.280 3 C -0.027 4.027 4 C -0.084 4.084 5 N -0.207 5.207 6 C -0.090 4.090 7 C 0.226 3.774 8 O -0.455 6.455 9 N -0.203 5.203 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.007 4.007 19 H 0.124 0.876 20 C -0.156 4.156 21 C -0.715 4.715 22 S 2.565 3.435 23 O -0.940 6.940 24 O -0.939 6.939 25 C -0.784 4.784 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.900 8.859 5.217 18.103 hybrid contribution 1.382 -0.032 -0.174 1.393 sum -13.518 8.827 5.043 16.914 Atomic orbital electron populations 1.22805 0.81851 1.02866 0.99811 1.88118 1.18681 1.26285 1.94888 1.22890 0.93550 0.86003 1.00284 1.22398 0.93668 0.97733 0.94633 1.61582 1.12747 1.46587 0.99770 1.21985 0.87382 0.98494 1.01160 1.19710 0.83598 0.87232 0.86812 1.90526 1.47841 1.53719 1.53460 1.41879 1.05325 1.35161 1.37925 1.19683 0.92388 1.13868 1.16827 0.87906 1.25247 0.95335 0.98720 0.98589 1.69607 1.00511 1.41764 1.42488 0.85875 0.77914 0.80502 0.80100 1.20445 1.20956 1.19413 1.22120 0.98856 0.84420 0.95340 0.87604 1.22588 0.95039 1.01054 0.96871 1.30616 1.11102 1.19597 1.10202 1.09214 0.77912 0.78862 0.77533 1.93593 1.53613 1.78303 1.68479 1.93606 1.79277 1.65340 1.55702 1.31542 1.19842 1.09800 1.17265 0.94094 0.89459 0.94297 0.92537 0.93200 0.88994 0.92266 0.88885 0.93033 0.77554 0.91888 0.86891 0.88249 0.84583 0.84196 0.83061 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.64 101.05 1.08 1.30 16 2 O -0.36 -4.57 9.44 -35.23 -0.33 -4.90 16 3 C 0.05 0.54 4.61 37.16 0.17 0.71 16 4 C 0.04 0.49 4.80 -3.83 -0.02 0.47 16 5 N -0.48 -7.12 3.93 -226.81 -0.89 -8.01 16 6 C 0.04 0.66 5.38 -4.97 -0.03 0.64 16 7 C 0.44 9.78 7.12 -10.98 -0.08 9.70 16 8 O -0.57 -14.49 15.21 5.55 0.08 -14.41 16 9 N -0.57 -13.73 5.29 -10.96 -0.06 -13.79 16 10 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 11 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 14 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.10 1.39 1.91 -66.65 -0.13 1.27 16 19 H 0.11 1.65 6.84 -51.93 -0.36 1.29 16 20 C -0.12 -1.45 5.58 -25.19 -0.14 -1.59 16 21 C -0.58 -5.74 7.31 38.24 0.28 -5.46 16 22 S 2.38 26.47 5.74 -107.50 -0.62 25.85 16 23 O -0.94 -12.30 17.54 -57.73 -1.01 -13.31 16 24 O -0.94 -13.75 18.15 -57.73 -1.05 -14.80 16 25 C -0.65 -6.81 5.54 37.77 0.21 -6.60 16 26 H 0.04 0.35 7.58 -51.93 -0.39 -0.04 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.52 3.29 -51.93 -0.17 0.35 16 31 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16 32 H 0.06 0.53 5.96 -51.93 -0.31 0.22 16 33 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 34 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.11 1.65 8.14 -51.92 -0.42 1.22 16 38 H 0.10 1.17 2.82 -51.93 -0.15 1.02 16 39 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.14 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.15 1.35 3.82 -51.93 -0.20 1.15 16 42 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -35.27 341.92 -7.53 -42.80 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.61 Total: 10.38 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 1.10 Total: -7.28 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.23 Total: -45.18 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.31 Total: -47.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 26.47 SS G_CDS: -0.62 Total: 25.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.27 -7.53 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116393490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.826 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds