Wall clock time and date at job start Fri Apr 10 2020 18:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00255 * 2 1 4 4 C 1.53005 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47016 * 60.39436 * 4 3 2 6 6 C 1.46904 * 110.99683 * 183.42799 * 5 4 3 7 7 C 1.50703 * 109.47083 * 163.74760 * 6 5 4 8 8 O 1.21290 * 120.00142 * 354.25318 * 7 6 5 9 9 N 1.34780 * 119.99816 * 174.25590 * 7 6 5 10 10 C 1.37096 * 119.99769 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00161 * 359.72188 * 10 9 7 12 12 C 1.38953 * 119.99749 * 179.72280 * 10 9 7 13 13 N 1.31410 * 120.00193 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99620 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46918 * 90.00544 * 14 12 10 16 16 H 1.48505 * 109.46714 * 209.99901 * 14 12 10 17 17 H 1.48500 * 109.47416 * 329.99992 * 14 12 10 18 18 C 1.46894 * 111.00361 * 59.47393 * 5 4 3 19 19 H 1.08998 * 109.64849 * 150.38373 * 18 5 4 20 20 C 1.53878 * 109.64816 * 270.68320 * 18 5 4 21 21 C 1.55046 * 106.62648 * 167.03079 * 20 18 5 22 22 S 1.83288 * 102.56513 * 317.56438 * 21 20 18 23 23 O 1.42099 * 109.35593 * 269.81206 * 22 21 20 24 24 O 1.42103 * 109.47273 * 136.64504 * 22 21 20 25 25 C 1.54168 * 109.64578 * 29.95619 * 18 5 4 26 26 H 1.08995 * 109.47295 * 59.99577 * 1 2 3 27 27 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46722 * 299.99703 * 1 2 3 29 29 H 1.08999 * 109.47072 * 60.00297 * 3 2 1 30 30 H 1.09000 * 109.47081 * 300.00107 * 3 2 1 31 31 H 1.09002 * 109.46506 * 300.39726 * 4 3 2 32 32 H 1.08993 * 109.46758 * 180.39667 * 4 3 2 33 33 H 1.08999 * 109.47118 * 43.74752 * 6 5 4 34 34 H 1.08999 * 109.47224 * 283.74253 * 6 5 4 35 35 H 0.97000 * 120.00245 * 359.71658 * 9 7 6 36 36 H 0.97001 * 119.99994 * 179.97438 * 13 12 10 37 37 H 1.09009 * 110.02582 * 286.32137 * 20 18 5 38 38 H 1.08999 * 110.02508 * 47.73465 * 20 18 5 39 39 H 1.08999 * 110.79361 * 199.29555 * 21 20 18 40 40 H 1.09003 * 110.78675 * 75.83177 * 21 20 18 41 41 H 1.08999 * 110.31417 * 331.14379 * 25 18 5 42 42 H 1.08997 * 110.32196 * 93.33689 * 25 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9691 0.4641 -1.2051 6 6 5.4235 0.2575 -1.1999 7 6 5.7839 -0.8023 -2.2088 8 8 4.9091 -1.4069 -2.7921 9 7 7.0785 -1.0785 -2.4629 10 6 7.4063 -2.0423 -3.3811 11 1 6.6273 -2.5834 -3.8975 12 6 8.7409 -2.3230 -3.6472 13 7 9.6888 -1.6642 -3.0191 14 14 9.1877 -3.6368 -4.8978 15 1 9.3070 -3.0194 -6.2431 16 1 10.4830 -4.2581 -4.5217 17 1 8.1283 -4.6771 -4.9227 18 6 3.5416 1.1674 -2.4218 19 1 4.2508 0.9724 -3.2262 20 6 2.1436 0.6774 -2.8384 21 6 1.6235 1.6752 -3.9051 22 16 2.1139 3.2973 -3.2065 23 8 1.0649 3.7933 -2.3862 24 8 2.6526 4.1137 -4.2373 25 6 3.4728 2.6829 -2.1474 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8569 0.6374 0.8856 32 1 3.9788 2.1803 0.0065 33 1 5.7416 -0.0623 -0.2076 34 1 5.9240 1.1906 -1.4588 35 1 7.7782 -0.5922 -1.9994 36 1 10.6205 -1.8604 -3.2047 37 1 2.2106 -0.3236 -3.2648 38 1 1.4775 0.6723 -1.9757 39 1 0.5400 1.6076 -4.0025 40 1 2.1108 1.5042 -4.8650 41 1 3.2472 2.8674 -1.0971 42 1 4.4130 3.1605 -2.4230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116393490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:17 Heat of formation + Delta-G solvation = -140.746896 kcal Electronic energy + Delta-G solvation = -26665.242144 eV Core-core repulsion = 22773.259553 eV Total energy + Delta-G solvation = -3891.982591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07648 -39.59039 -38.14898 -37.94380 -37.14749 -35.87339 -34.91733 -33.19870 -31.51742 -30.37672 -28.12367 -27.15250 -26.35670 -25.29152 -22.94103 -21.53451 -20.83712 -19.92764 -19.80548 -18.52179 -18.14207 -17.66473 -17.23478 -16.80898 -16.70988 -16.37988 -16.13868 -16.03671 -15.67271 -15.45548 -15.09213 -14.96258 -14.69518 -14.27724 -13.89045 -13.61424 -13.47623 -13.36443 -13.21255 -13.16285 -13.03218 -12.94265 -12.68191 -12.56059 -12.37527 -12.30682 -12.11822 -11.90043 -11.68381 -11.59410 -11.42989 -11.23062 -10.47217 -10.25020 -9.94825 -9.18527 -8.42885 -5.90336 -0.98371 1.39385 1.43165 1.49538 1.55176 2.12966 2.29578 2.49466 2.65975 2.94794 2.97249 3.24920 3.36737 3.38806 3.70159 3.81834 3.85004 3.99870 4.08772 4.13316 4.35626 4.39124 4.41890 4.52728 4.54773 4.59771 4.62120 4.63506 4.69862 4.80920 4.89695 4.96578 5.08842 5.27423 5.44930 5.87692 6.05093 6.12490 6.39712 6.66278 7.18596 7.63612 8.19653 8.74615 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.003791 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.944953 B = 7384.631594 C = 8151.673442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.391 6.391 3 C 0.043 3.957 4 C 0.038 3.962 5 N -0.506 5.506 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.608 6.608 9 N -0.579 5.579 10 C -0.327 4.327 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.988 3.012 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.274 1.274 18 C 0.098 3.902 19 H 0.078 0.922 20 C -0.117 4.117 21 C -0.574 4.574 22 S 2.400 3.600 23 O -0.959 6.959 24 O -0.978 6.978 25 C -0.642 4.642 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.395 0.605 36 H 0.276 0.724 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 10.019 6.670 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.310 6.310 3 C -0.033 4.033 4 C -0.089 4.089 5 N -0.230 5.230 6 C -0.079 4.079 7 C 0.228 3.772 8 O -0.493 6.493 9 N -0.217 5.217 10 C -0.457 4.457 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.564 5.564 14 Si 0.813 3.187 15 H -0.198 1.198 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.012 4.012 19 H 0.096 0.904 20 C -0.155 4.155 21 C -0.706 4.706 22 S 2.586 3.414 23 O -0.956 6.956 24 O -0.975 6.975 25 C -0.773 4.773 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.229 0.771 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.180 0.820 40 H 0.164 0.836 41 H 0.190 0.810 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.403 9.909 6.144 19.318 hybrid contribution 1.445 -0.377 -0.415 1.550 sum -13.958 9.532 5.730 17.847 Atomic orbital electron populations 1.22968 0.80567 1.03534 1.00932 1.88079 1.20290 1.27537 1.95124 1.23046 0.93048 0.85664 1.01563 1.22584 0.94329 0.98938 0.93025 1.61524 1.11544 1.48493 1.01391 1.21846 0.89050 0.97236 0.99770 1.20824 0.82382 0.87332 0.86620 1.90500 1.48693 1.55215 1.54881 1.41953 1.06347 1.35267 1.38123 1.19622 0.92430 1.15315 1.18326 0.90339 1.25955 0.94858 1.00391 1.00042 1.69666 1.00788 1.42638 1.43300 0.84992 0.77668 0.77997 0.78082 1.19793 1.19795 1.19848 1.22055 0.98547 0.86337 0.94309 0.90399 1.22521 0.95074 1.00124 0.97820 1.30593 1.12899 1.17461 1.09649 1.08565 0.77434 0.78618 0.76775 1.93567 1.54250 1.79030 1.68713 1.93562 1.79910 1.66954 1.57073 1.31463 1.20255 1.07310 1.18306 0.93437 0.89190 0.92652 0.89993 0.93052 0.88577 0.89337 0.86916 0.90519 0.77124 0.91491 0.89719 0.87254 0.81957 0.83625 0.80994 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.64 113.37 1.21 1.48 16 2 O -0.39 -9.23 9.44 -148.98 -1.41 -10.64 16 3 C 0.04 0.81 4.61 71.98 0.33 1.15 16 4 C 0.04 0.75 4.80 86.31 0.41 1.16 16 5 N -0.51 -14.18 3.93 -871.50 -3.43 -17.60 16 6 C 0.05 1.61 5.38 85.56 0.46 2.07 16 7 C 0.44 19.80 7.12 87.66 0.62 20.42 16 8 O -0.61 -31.76 15.21 -3.06 -0.05 -31.80 16 9 N -0.58 -28.60 5.29 -306.98 -1.62 -30.22 16 10 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 14 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C 0.10 2.56 1.91 45.61 0.09 2.64 16 19 H 0.08 2.45 6.84 -2.39 -0.02 2.44 16 20 C -0.12 -2.84 5.58 31.59 0.18 -2.66 16 21 C -0.57 -10.57 7.31 72.68 0.53 -10.04 16 22 S 2.40 49.41 5.74 -56.49 -0.32 49.09 16 23 O -0.96 -22.92 17.54 -127.47 -2.24 -25.16 16 24 O -0.98 -27.57 18.15 -127.47 -2.31 -29.89 16 25 C -0.64 -11.91 5.54 72.38 0.40 -11.51 16 26 H 0.05 0.73 7.58 -2.39 -0.02 0.71 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.93 3.29 -2.39 -0.01 0.92 16 31 H 0.10 1.83 8.01 -2.39 -0.02 1.81 16 32 H 0.09 1.22 5.96 -2.39 -0.01 1.21 16 33 H 0.11 3.06 7.90 -2.39 -0.02 3.04 16 34 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 35 H 0.40 18.56 7.90 -92.71 -0.73 17.82 16 36 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.11 2.43 2.82 -2.39 -0.01 2.43 16 39 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.17 2.46 3.82 -2.39 -0.01 2.45 16 42 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -77.12 341.92 -3.22 -80.34 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.33 Total: 33.01 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.51 Total: -12.85 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.77 Total: -96.76 kcal Atomic # 8 Polarization: -91.48 SS G_CDS: -6.00 Total: -97.48 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 49.41 SS G_CDS: -0.32 Total: 49.09 kcal Total: -77.12 -3.22 -80.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116393490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.410 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds