Wall clock time and date at job start Fri Apr 10 2020 18:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42108 * 108.57499 * 2 1 4 4 O 1.42099 * 108.58361 * 228.97289 * 2 1 3 5 5 C 1.81400 * 101.92236 * 114.48365 * 2 1 3 6 6 C 1.50701 * 109.47380 * 180.02562 * 5 2 1 7 7 O 1.21284 * 119.99691 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00280 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00022 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47418 * 179.97438 * 9 8 6 11 11 H 1.09006 * 108.56582 * 57.94527 * 10 9 8 12 12 C 1.46918 * 108.62237 * 175.75593 * 10 9 8 13 13 N 1.50118 * 106.77770 * 177.91987 * 12 10 9 14 14 C 1.36931 * 120.63330 * 111.32146 * 13 12 10 15 15 H 1.08008 * 119.99981 * 155.69803 * 14 13 12 16 16 C 1.38818 * 120.00638 * 335.70310 * 14 13 12 17 17 N 1.31615 * 119.99608 * 340.68794 * 16 14 13 18 18 Si 1.86793 * 120.00296 * 160.68537 * 16 14 13 19 19 H 1.48495 * 109.47393 * 90.00279 * 18 16 14 20 20 H 1.48499 * 109.47275 * 210.00366 * 18 16 14 21 21 H 1.48504 * 109.47271 * 330.00164 * 18 16 14 22 22 C 1.43421 * 118.73045 * 291.34831 * 13 12 10 23 23 C 1.55329 * 116.24025 * 89.35197 * 22 13 12 24 24 C 1.55190 * 108.87518 * 319.46850 * 23 22 13 25 25 O 1.39650 * 110.56870 * 322.13990 * 24 23 22 26 26 H 1.08998 * 109.47371 * 305.50958 * 1 2 3 27 27 H 1.08999 * 109.47299 * 65.51726 * 1 2 3 28 28 H 1.09004 * 109.46442 * 185.51398 * 1 2 3 29 29 H 1.09005 * 109.46965 * 60.00227 * 5 2 1 30 30 H 1.09005 * 109.47353 * 300.00180 * 5 2 1 31 31 H 0.96999 * 119.99922 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47402 * 299.99820 * 9 8 6 33 33 H 1.09005 * 109.47269 * 59.99939 * 9 8 6 34 34 H 1.08996 * 109.99122 * 297.23839 * 12 10 9 35 35 H 1.08994 * 109.98581 * 58.60747 * 12 10 9 36 36 H 0.96996 * 119.99985 * 180.02562 * 17 16 14 37 37 H 1.09003 * 108.12693 * 327.59591 * 22 13 12 38 38 H 1.08996 * 107.96477 * 210.98612 * 22 13 12 39 39 H 1.08994 * 109.57225 * 199.65107 * 23 22 13 40 40 H 1.08998 * 109.57063 * 79.28444 * 23 22 13 41 41 H 1.09005 * 109.25830 * 201.86137 * 24 23 22 42 42 H 1.08998 * 109.25996 * 82.42189 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8171 1.7958 7 8 4.4218 -0.4177 0.9210 8 7 4.1974 -1.3337 2.9292 9 6 5.6497 -1.4123 3.1048 10 6 5.9658 -2.0329 4.4672 11 1 5.5017 -3.0180 4.5160 12 6 7.4213 -2.1969 4.5816 13 7 7.6880 -2.7582 5.9481 14 6 8.1492 -4.0387 6.0985 15 1 8.6996 -4.3137 6.9862 16 6 7.9096 -4.9835 5.1101 17 7 6.9480 -4.7887 4.2328 18 14 8.9519 -6.5313 5.0250 19 1 8.3244 -7.5965 5.8476 20 1 9.0478 -6.9867 3.6148 21 1 10.3124 -6.2412 5.5450 22 6 7.4500 -1.9279 7.0930 23 6 6.0199 -1.9840 7.6966 24 6 4.9877 -2.0289 6.5387 25 8 5.3986 -1.2122 5.4831 26 1 -0.3634 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3632 -1.0230 0.0988 29 1 1.7611 -1.7369 1.6665 30 1 1.7610 -0.1169 2.4043 31 1 3.6062 -1.6527 3.6289 32 1 6.0782 -2.0301 2.3156 33 1 6.0766 -0.4106 3.0544 34 1 7.7796 -2.8877 3.8185 35 1 7.9147 -1.2311 4.4727 36 1 6.7803 -5.4489 3.5423 37 1 7.6596 -0.8956 6.8127 38 1 8.1577 -2.2161 7.8703 39 1 5.8460 -1.0975 8.3065 40 1 5.9179 -2.8781 8.3115 41 1 4.0210 -1.6835 6.9052 42 1 4.8908 -3.0547 6.1830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149301230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:23 Heat of formation + Delta-G solvation = -111.727665 kcal Electronic energy + Delta-G solvation = -26087.931655 eV Core-core repulsion = 22197.207433 eV Total energy + Delta-G solvation = -3890.724222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81216 -38.83783 -37.07998 -36.08774 -35.09973 -34.69766 -32.37678 -31.48176 -30.63123 -29.66908 -28.48889 -25.47182 -25.26790 -22.68412 -20.94593 -20.54560 -19.65526 -18.97974 -17.63450 -17.21242 -16.80713 -16.47863 -16.03531 -15.94891 -15.31361 -15.12454 -14.94251 -14.48227 -14.13680 -13.89040 -13.62263 -13.54786 -13.35456 -13.13888 -12.99472 -12.53712 -12.24794 -12.13290 -12.07011 -12.02534 -11.46376 -11.32669 -11.28299 -11.01107 -10.88630 -10.78500 -10.53948 -10.27828 -10.13775 -9.98162 -9.72948 -9.56811 -8.91477 -8.83934 -8.55781 -6.87158 -5.97134 -3.35348 -0.31137 2.52095 2.53591 3.03142 3.30126 3.39103 3.41523 3.71642 3.79337 4.39733 4.40644 4.45097 4.48357 4.63817 4.81023 4.94035 5.17657 5.23823 5.27640 5.63026 5.75341 5.84993 5.92611 6.06360 6.25488 6.32799 6.38120 6.45084 6.60534 6.63044 6.74165 6.81591 6.90522 7.05138 7.27425 7.50862 7.67774 8.04935 8.15936 8.27614 9.02438 9.70657 10.24731 11.12270 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.003258 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.651525 B = 8590.870923 C = 9461.023918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.458 3.542 3 O -0.923 6.923 4 O -0.922 6.922 5 C -0.659 4.659 6 C 0.535 3.465 7 O -0.537 6.537 8 N -0.700 5.700 9 C 0.116 3.884 10 C 0.060 3.940 11 H 0.108 0.892 12 C 0.142 3.858 13 N -0.588 5.588 14 C -0.249 4.249 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.404 0.596 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.021 0.979 36 H 0.256 0.744 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 6.791 -2.063 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.634 3.366 3 O -0.920 6.920 4 O -0.919 6.919 5 C -0.786 4.786 6 C 0.319 3.681 7 O -0.415 6.415 8 N -0.349 5.349 9 C -0.007 4.007 10 C 0.001 3.999 11 H 0.126 0.874 12 C 0.018 3.982 13 N -0.308 5.308 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.554 5.554 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.206 1.206 22 C 0.031 3.969 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.289 6.289 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.238 0.762 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.867 7.441 -3.441 16.109 hybrid contribution -0.671 -1.675 1.214 2.175 sum -14.538 5.766 -2.227 15.797 Atomic orbital electron populations 1.30414 1.27415 1.11590 1.11899 1.07090 0.77309 0.75828 0.76353 1.93594 1.78647 1.34197 1.85549 1.93599 1.78598 1.67185 1.52491 1.30870 1.03741 1.16300 1.27733 1.19057 0.87256 0.78583 0.83251 1.90855 1.60598 1.48613 1.41459 1.45793 1.09317 1.61628 1.18162 1.21863 0.78499 1.01829 0.98557 1.22231 0.98768 0.94669 0.84230 0.87407 1.20748 0.91815 0.96123 0.89557 1.44114 1.75342 1.11813 0.99522 1.19255 1.27249 0.85762 1.05569 0.91301 1.24894 0.97397 0.97634 0.99612 1.69844 1.29561 1.36270 1.19757 0.86266 0.80462 0.82845 0.77008 1.21545 1.21472 1.20557 1.20386 0.92459 0.94023 0.90027 1.23577 0.99914 0.99893 0.97919 1.22355 0.95052 0.95086 0.88621 1.87520 1.79108 1.33088 1.29158 0.85312 0.85028 0.85279 0.82389 0.82442 0.76193 0.89790 0.91400 0.87705 0.96115 0.93419 0.94958 0.94830 0.93153 0.92477 0.93120 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.84 10.62 101.05 1.07 -1.77 16 2 S 2.46 24.42 4.60 -107.50 -0.49 23.92 16 3 O -0.92 -13.14 17.94 -59.55 -1.07 -14.20 16 4 O -0.92 -13.33 17.95 -59.51 -1.07 -14.40 16 5 C -0.66 -5.60 6.29 36.01 0.23 -5.38 16 6 C 0.54 8.07 7.85 -10.99 -0.09 7.98 16 7 O -0.54 -10.44 15.62 2.55 0.04 -10.40 16 8 N -0.70 -10.51 5.43 -60.29 -0.33 -10.84 16 9 C 0.12 2.09 5.24 -4.04 -0.02 2.07 16 10 C 0.06 1.17 1.95 -29.64 -0.06 1.11 16 11 H 0.11 2.35 5.23 -51.93 -0.27 2.08 16 12 C 0.14 3.16 4.71 -4.93 -0.02 3.13 16 13 N -0.59 -13.80 2.61 -174.51 -0.46 -14.26 16 14 C -0.25 -6.37 9.61 -15.06 -0.14 -6.52 16 15 H 0.07 1.77 7.87 -52.48 -0.41 1.35 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.91 -23.23 9.56 55.49 0.53 -22.69 16 18 Si 0.90 20.59 29.60 -169.99 -5.03 15.56 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.16 3.30 5.33 -4.44 -0.02 3.28 16 23 C -0.17 -3.09 6.75 -24.34 -0.16 -3.26 16 24 C 0.07 1.18 6.38 38.32 0.24 1.43 16 25 O -0.37 -6.92 9.54 -31.97 -0.30 -7.23 16 26 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 27 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.16 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.16 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.40 5.10 8.33 -40.82 -0.34 4.76 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 2.55 6.02 -51.93 -0.31 2.24 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 38 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.26 6.66 -51.93 -0.35 0.91 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -35.61 351.75 -8.24 -43.85 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.30 Total: 3.33 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 0.94 Total: 2.05 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.25 Total: -47.79 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.40 Total: -46.23 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 24.42 SS G_CDS: -0.49 Total: 23.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.61 -8.24 -43.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149301230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.877 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds