Wall clock time and date at job start Fri Apr 10 2020 18:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42108 * 108.57499 * 2 1 4 4 O 1.42099 * 108.58361 * 228.97289 * 2 1 3 5 5 C 1.81400 * 101.92236 * 114.48365 * 2 1 3 6 6 C 1.50701 * 109.47380 * 180.02562 * 5 2 1 7 7 O 1.21284 * 119.99691 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00280 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00022 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47418 * 179.97438 * 9 8 6 11 11 H 1.09006 * 108.56582 * 57.94527 * 10 9 8 12 12 C 1.46918 * 108.62237 * 175.75593 * 10 9 8 13 13 N 1.50118 * 106.77770 * 177.91987 * 12 10 9 14 14 C 1.36931 * 120.63330 * 111.32146 * 13 12 10 15 15 H 1.08008 * 119.99981 * 155.69803 * 14 13 12 16 16 C 1.38818 * 120.00638 * 335.70310 * 14 13 12 17 17 N 1.31615 * 119.99608 * 340.68794 * 16 14 13 18 18 Si 1.86793 * 120.00296 * 160.68537 * 16 14 13 19 19 H 1.48495 * 109.47393 * 90.00279 * 18 16 14 20 20 H 1.48499 * 109.47275 * 210.00366 * 18 16 14 21 21 H 1.48504 * 109.47271 * 330.00164 * 18 16 14 22 22 C 1.43421 * 118.73045 * 291.34831 * 13 12 10 23 23 C 1.55329 * 116.24025 * 89.35197 * 22 13 12 24 24 C 1.55190 * 108.87518 * 319.46850 * 23 22 13 25 25 O 1.39650 * 110.56870 * 322.13990 * 24 23 22 26 26 H 1.08998 * 109.47371 * 305.50958 * 1 2 3 27 27 H 1.08999 * 109.47299 * 65.51726 * 1 2 3 28 28 H 1.09004 * 109.46442 * 185.51398 * 1 2 3 29 29 H 1.09005 * 109.46965 * 60.00227 * 5 2 1 30 30 H 1.09005 * 109.47353 * 300.00180 * 5 2 1 31 31 H 0.96999 * 119.99922 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47402 * 299.99820 * 9 8 6 33 33 H 1.09005 * 109.47269 * 59.99939 * 9 8 6 34 34 H 1.08996 * 109.99122 * 297.23839 * 12 10 9 35 35 H 1.08994 * 109.98581 * 58.60747 * 12 10 9 36 36 H 0.96996 * 119.99985 * 180.02562 * 17 16 14 37 37 H 1.09003 * 108.12693 * 327.59591 * 22 13 12 38 38 H 1.08996 * 107.96477 * 210.98612 * 22 13 12 39 39 H 1.08994 * 109.57225 * 199.65107 * 23 22 13 40 40 H 1.08998 * 109.57063 * 79.28444 * 23 22 13 41 41 H 1.09005 * 109.25830 * 201.86137 * 24 23 22 42 42 H 1.08998 * 109.25996 * 82.42189 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8171 1.7958 7 8 4.4218 -0.4177 0.9210 8 7 4.1974 -1.3337 2.9292 9 6 5.6497 -1.4123 3.1048 10 6 5.9658 -2.0329 4.4672 11 1 5.5017 -3.0180 4.5160 12 6 7.4213 -2.1969 4.5816 13 7 7.6880 -2.7582 5.9481 14 6 8.1492 -4.0387 6.0985 15 1 8.6996 -4.3137 6.9862 16 6 7.9096 -4.9835 5.1101 17 7 6.9480 -4.7887 4.2328 18 14 8.9519 -6.5313 5.0250 19 1 8.3244 -7.5965 5.8476 20 1 9.0478 -6.9867 3.6148 21 1 10.3124 -6.2412 5.5450 22 6 7.4500 -1.9279 7.0930 23 6 6.0199 -1.9840 7.6966 24 6 4.9877 -2.0289 6.5387 25 8 5.3986 -1.2122 5.4831 26 1 -0.3634 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3632 -1.0230 0.0988 29 1 1.7611 -1.7369 1.6665 30 1 1.7610 -0.1169 2.4043 31 1 3.6062 -1.6527 3.6289 32 1 6.0782 -2.0301 2.3156 33 1 6.0766 -0.4106 3.0544 34 1 7.7796 -2.8877 3.8185 35 1 7.9147 -1.2311 4.4727 36 1 6.7803 -5.4489 3.5423 37 1 7.6596 -0.8956 6.8127 38 1 8.1577 -2.2161 7.8703 39 1 5.8460 -1.0975 8.3065 40 1 5.9179 -2.8781 8.3115 41 1 4.0210 -1.6835 6.9052 42 1 4.8908 -3.0547 6.1830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149301230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:21 Heat of formation + Delta-G solvation = -141.776616 kcal Electronic energy + Delta-G solvation = -26089.234676 eV Core-core repulsion = 22197.207433 eV Total energy + Delta-G solvation = -3892.027243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.16534 -40.30196 -37.95318 -36.96315 -36.81730 -36.10419 -33.93150 -33.13227 -31.64650 -30.32285 -29.88956 -27.07603 -26.94295 -24.30840 -22.46294 -21.84449 -21.30546 -19.78032 -19.00385 -18.61225 -17.91730 -17.65052 -17.22203 -16.92196 -16.65506 -16.48835 -16.29819 -16.06045 -15.59146 -15.42915 -14.86762 -14.55529 -14.32271 -14.10500 -13.91843 -13.84799 -13.64413 -13.46017 -13.28719 -13.03065 -12.97769 -12.94513 -12.62743 -12.53459 -12.32254 -12.09558 -11.93410 -11.80167 -11.64223 -11.42177 -11.35631 -11.18309 -10.56657 -10.30050 -10.21404 -8.73090 -7.91098 -5.31109 -0.99101 1.39340 1.46406 1.51754 1.58419 1.88028 1.99062 2.51448 2.96014 3.09365 3.15331 3.26846 3.47710 3.57005 4.00501 4.12614 4.17155 4.26242 4.35521 4.35992 4.37287 4.39330 4.54772 4.71556 4.74117 4.79342 4.93018 5.02962 5.06390 5.17827 5.19018 5.30365 5.34687 5.39984 5.48281 5.67431 6.32086 6.36665 6.50091 7.02939 7.09898 7.82070 8.34962 9.15078 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.003258 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.651525 B = 8590.870923 C = 9461.023918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.437 3.563 3 O -0.984 6.984 4 O -0.986 6.986 5 C -0.644 4.644 6 C 0.521 3.479 7 O -0.591 6.591 8 N -0.694 5.694 9 C 0.126 3.874 10 C 0.080 3.920 11 H 0.089 0.911 12 C 0.143 3.857 13 N -0.602 5.602 14 C -0.264 4.264 15 H 0.063 0.937 16 C -0.035 4.035 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.280 1.280 22 C 0.153 3.847 23 C -0.165 4.165 24 C 0.067 3.933 25 O -0.367 6.367 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.162 0.838 29 H 0.202 0.798 30 H 0.206 0.794 31 H 0.418 0.582 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.023 0.977 36 H 0.251 0.749 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.361 6.944 -0.546 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.621 3.379 3 O -0.981 6.981 4 O -0.983 6.983 5 C -0.772 4.772 6 C 0.307 3.693 7 O -0.473 6.473 8 N -0.344 5.344 9 C 0.000 4.000 10 C 0.021 3.979 11 H 0.107 0.893 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.393 4.393 15 H 0.081 0.919 16 C -0.231 4.231 17 N -0.563 5.563 18 Si 0.787 3.213 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.206 1.206 22 C 0.025 3.975 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.285 6.285 26 H 0.182 0.818 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.220 0.780 30 H 0.223 0.777 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.215 7.607 -1.899 18.916 hybrid contribution 0.324 -1.699 0.820 1.915 sum -16.890 5.907 -1.079 17.926 Atomic orbital electron populations 1.30070 1.18672 1.14760 1.14153 1.07190 0.80496 0.74018 0.76172 1.93521 1.81702 1.36528 1.86337 1.93525 1.81721 1.67915 1.55167 1.30807 0.98611 1.19788 1.27999 1.20133 0.90106 0.77041 0.82015 1.90840 1.62825 1.50554 1.43062 1.45665 1.08045 1.61722 1.18975 1.21487 0.80786 1.00692 0.96998 1.21750 0.96861 0.94011 0.85241 0.89293 1.20671 0.93665 0.95256 0.88610 1.44222 1.76013 1.11505 1.00588 1.19387 1.27572 0.86788 1.05598 0.91948 1.25447 0.98263 0.99782 0.99646 1.69965 1.30022 1.36560 1.19737 0.85434 0.79167 0.80317 0.76365 1.21284 1.22066 1.20584 1.20510 0.94386 0.93455 0.89179 1.23489 0.97793 1.01154 0.98134 1.22435 0.96726 0.93905 0.88018 1.87521 1.78904 1.32906 1.29193 0.81775 0.83983 0.81949 0.78029 0.77725 0.74504 0.91818 0.92151 0.90385 0.95917 0.93935 0.94792 0.95158 0.90309 0.92702 0.89112 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.13 10.62 113.37 1.20 -0.92 16 2 S 2.44 45.59 4.60 -56.49 -0.26 45.33 16 3 O -0.98 -28.57 17.94 -125.73 -2.26 -30.83 16 4 O -0.99 -29.37 17.95 -125.77 -2.26 -31.63 16 5 C -0.64 -8.90 6.29 71.24 0.45 -8.45 16 6 C 0.52 15.41 7.85 87.66 0.69 16.09 16 7 O -0.59 -24.03 15.62 -0.17 0.00 -24.03 16 8 N -0.69 -20.29 5.43 -463.05 -2.52 -22.81 16 9 C 0.13 4.63 5.24 86.38 0.45 5.08 16 10 C 0.08 3.17 1.95 28.71 0.06 3.23 16 11 H 0.09 3.93 5.23 -2.38 -0.01 3.92 16 12 C 0.14 6.50 4.71 83.79 0.39 6.89 16 13 N -0.60 -28.57 2.61 -706.01 -1.84 -30.41 16 14 C -0.26 -13.66 9.61 84.04 0.81 -12.85 16 15 H 0.06 3.24 7.87 -2.91 -0.02 3.22 16 16 C -0.04 -1.80 4.92 84.86 0.42 -1.39 16 17 N -0.92 -47.77 9.56 21.65 0.21 -47.57 16 18 Si 0.96 42.82 29.60 68.60 2.03 44.85 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 C 0.15 6.19 5.33 87.75 0.47 6.66 16 23 C -0.16 -5.57 6.75 32.15 0.22 -5.35 16 24 C 0.07 2.21 6.38 72.73 0.46 2.67 16 25 O -0.37 -13.14 9.54 -137.29 -1.31 -14.45 16 26 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.20 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.21 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.42 9.62 8.33 -92.71 -0.77 8.85 16 32 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.08 3.97 6.02 -2.39 -0.01 3.96 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 37 H 0.03 1.34 7.99 -2.39 -0.02 1.32 16 38 H 0.03 1.22 7.95 -2.39 -0.02 1.20 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 Total: -1.00 -84.09 351.75 -2.33 -86.42 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.26 Total: 13.47 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.62 Total: 11.66 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.15 Total: -100.79 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -5.83 Total: -100.93 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 45.59 SS G_CDS: -0.26 Total: 45.33 kcal Total: -84.09 -2.33 -86.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149301230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.360 kcal (2) G-P(sol) polarization free energy of solvation -84.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds