Wall clock time and date at job start Fri Apr 10 2020 18:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42102 * 108.57803 * 2 1 4 4 O 1.42099 * 108.58258 * 228.97662 * 2 1 3 5 5 C 1.81398 * 101.92613 * 114.48652 * 2 1 3 6 6 C 1.50692 * 109.47461 * 180.02562 * 5 2 1 7 7 O 1.21282 * 120.00473 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00073 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00287 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47165 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.40889 * 305.00127 * 10 9 8 12 12 C 1.54298 * 109.40378 * 185.16168 * 10 9 8 13 13 N 1.48179 * 110.69560 * 200.57324 * 12 10 9 14 14 C 1.36937 * 118.51544 * 138.76800 * 13 12 10 15 15 H 1.08001 * 120.00301 * 206.12294 * 14 13 12 16 16 C 1.38814 * 119.99636 * 26.12857 * 14 13 12 17 17 N 1.31622 * 120.00280 * 15.50698 * 16 14 13 18 18 Si 1.86799 * 120.00109 * 195.50422 * 16 14 13 19 19 H 1.48502 * 109.47148 * 89.99686 * 18 16 14 20 20 H 1.48496 * 109.47548 * 210.00238 * 18 16 14 21 21 H 1.48505 * 109.47114 * 330.00346 * 18 16 14 22 22 C 1.44460 * 122.97436 * 318.79987 * 13 12 10 23 23 C 1.54873 * 109.33035 * 88.90666 * 22 13 12 24 24 C 1.47681 * 109.68340 * 290.10342 * 23 22 13 25 25 O 1.40525 * 109.34099 * 64.80024 * 10 9 8 26 26 H 1.08993 * 109.47218 * 305.51285 * 1 2 3 27 27 H 1.09000 * 109.47446 * 65.52033 * 1 2 3 28 28 H 1.09001 * 109.46490 * 185.50991 * 1 2 3 29 29 H 1.08997 * 109.46825 * 59.99525 * 5 2 1 30 30 H 1.09000 * 109.46698 * 300.00163 * 5 2 1 31 31 H 0.97001 * 120.00227 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.46763 * 59.99752 * 9 8 6 33 33 H 1.08999 * 109.47029 * 300.00168 * 9 8 6 34 34 H 1.09006 * 109.23276 * 320.88770 * 12 10 9 35 35 H 1.09001 * 109.23322 * 80.30350 * 12 10 9 36 36 H 0.96996 * 120.00331 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.49755 * 208.86820 * 22 13 12 38 38 H 1.09003 * 109.48890 * 328.95401 * 22 13 12 39 39 H 1.08997 * 109.43762 * 50.17105 * 23 22 13 40 40 H 1.09006 * 109.43566 * 170.04051 * 23 22 13 41 41 H 1.09003 * 108.64669 * 181.87998 * 24 23 22 42 42 H 1.08998 * 108.64672 * 299.72163 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.6827 -0.8171 1.7956 7 8 4.4219 -0.4186 0.9206 8 7 4.1974 -1.3337 2.9290 9 6 5.6497 -1.4135 3.1042 10 6 5.9658 -2.0338 4.4666 11 1 5.4636 -1.4648 5.2489 12 6 7.4898 -1.9984 4.7048 13 7 7.8827 -2.9925 5.7310 14 6 9.0221 -3.7248 5.5294 15 1 9.1254 -4.6991 5.9838 16 6 10.0445 -3.2146 4.7412 17 7 10.0669 -1.9335 4.4403 18 14 11.3888 -4.3463 4.1075 19 1 10.9872 -4.9030 2.7906 20 1 12.6513 -3.5794 3.9565 21 1 11.5964 -5.4567 5.0715 22 6 7.1177 -3.2247 6.9343 23 6 6.0484 -4.3111 6.6603 24 6 5.0096 -3.7708 5.7603 25 8 5.5096 -3.3628 4.4899 26 1 -0.3633 0.5969 0.8364 27 1 -0.3634 0.4258 -0.9353 28 1 -0.3632 -1.0230 0.0987 29 1 1.7611 -1.7368 1.6664 30 1 1.7611 -0.1170 2.4042 31 1 3.6063 -1.6528 3.6288 32 1 6.0773 -0.4121 3.0533 33 1 6.0775 -2.0317 2.3150 34 1 8.0046 -2.2239 3.7708 35 1 7.7775 -1.0026 5.0419 36 1 10.7811 -1.5770 3.8892 37 1 7.7831 -3.5615 7.7291 38 1 6.6271 -2.2997 7.2375 39 1 6.5205 -5.1748 6.1921 40 1 5.5905 -4.6148 7.6017 41 1 4.2496 -4.5367 5.6059 42 1 4.5423 -2.9126 6.2431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149301236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:25 Heat of formation + Delta-G solvation = -114.939698 kcal Electronic energy + Delta-G solvation = -25762.539479 eV Core-core repulsion = 21871.675972 eV Total energy + Delta-G solvation = -3890.863507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.91267 -38.80099 -37.16158 -36.16904 -35.27334 -34.75952 -32.73387 -31.48847 -30.72082 -29.77896 -28.53561 -25.58183 -25.21675 -22.72109 -21.12493 -20.73571 -19.75660 -19.05788 -17.74881 -17.23846 -16.77513 -16.58519 -16.27201 -16.05730 -15.61619 -15.30000 -14.97256 -14.74384 -14.09069 -13.77121 -13.66872 -13.60502 -13.49688 -13.21831 -12.86902 -12.54264 -12.41649 -12.29267 -12.21067 -12.14542 -11.84686 -11.41499 -11.18419 -11.08446 -10.88234 -10.77353 -10.62261 -10.36737 -10.23364 -10.05684 -9.88824 -9.70337 -9.10064 -8.92349 -8.42022 -6.72424 -5.79219 -3.22555 -0.40104 2.36986 2.44700 2.86179 3.40491 3.47754 3.48138 3.60536 3.70280 4.19155 4.30396 4.33918 4.38164 4.50648 4.71551 4.79691 5.06923 5.20611 5.32955 5.41283 5.46095 5.55697 5.67476 5.84332 5.93826 6.02851 6.17116 6.23579 6.32077 6.37178 6.50060 6.72593 6.92871 7.13664 7.29825 7.54528 7.80834 7.89863 7.98597 8.44846 9.20192 9.86617 10.30345 11.28803 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.003034 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.458613 B = 9225.417687 C =10122.238477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.457 3.543 3 O -0.921 6.921 4 O -0.920 6.920 5 C -0.660 4.660 6 C 0.536 3.464 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.120 3.880 10 C 0.055 3.945 11 H 0.048 0.952 12 C 0.166 3.834 13 N -0.585 5.585 14 C -0.257 4.257 15 H 0.065 0.935 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.157 3.843 23 C -0.184 4.184 24 C 0.079 3.921 25 O -0.360 6.360 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.402 0.598 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.795 2.357 -0.874 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.633 3.367 3 O -0.918 6.918 4 O -0.917 6.917 5 C -0.787 4.787 6 C 0.319 3.681 7 O -0.407 6.407 8 N -0.358 5.358 9 C -0.004 4.004 10 C -0.005 4.005 11 H 0.066 0.934 12 C 0.039 3.961 13 N -0.306 5.306 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.029 3.971 23 C -0.225 4.225 24 C 0.002 3.998 25 O -0.279 6.279 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.236 0.764 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.520 2.921 -2.358 21.845 hybrid contribution -0.331 -1.017 1.033 1.487 sum -21.851 1.903 -1.325 21.974 Atomic orbital electron populations 1.30410 1.27319 1.11580 1.11970 1.07134 0.77366 0.75853 0.76314 1.93601 1.78643 1.34125 1.85468 1.93607 1.78595 1.67191 1.52340 1.30882 1.03484 1.16349 1.27984 1.19074 0.87355 0.78516 0.83134 1.90889 1.60559 1.48104 1.41125 1.45853 1.09159 1.62143 1.18638 1.21751 0.78355 1.01865 0.98388 1.23200 0.99741 0.83211 0.94353 0.93367 1.21638 0.86937 0.92609 0.94874 1.43573 1.25266 1.44912 1.16880 1.19176 0.92673 0.97552 1.29235 0.91733 1.25011 0.97361 0.95362 1.01585 1.70015 1.33891 1.10671 1.40413 0.86287 0.81190 0.80037 0.79206 1.21339 1.21762 1.20541 1.20668 0.92426 0.94251 0.89773 1.22305 0.99340 1.02528 0.98319 1.21287 0.95181 0.98188 0.85127 1.87431 1.81553 1.28565 1.30302 0.85314 0.84955 0.85286 0.82350 0.82443 0.76414 0.89544 0.89858 0.89684 0.94383 0.93505 0.93078 0.95391 0.91080 0.92358 0.91572 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.23 10.62 101.05 1.07 -1.16 16 2 S 2.46 22.11 4.60 -107.50 -0.49 21.61 16 3 O -0.92 -12.36 17.95 -59.53 -1.07 -13.43 16 4 O -0.92 -12.61 17.95 -59.52 -1.07 -13.68 16 5 C -0.66 -4.65 6.29 36.00 0.23 -4.42 16 6 C 0.54 7.29 7.85 -10.99 -0.09 7.21 16 7 O -0.53 -9.82 15.62 2.56 0.04 -9.78 16 8 N -0.71 -9.18 5.49 -60.30 -0.33 -9.51 16 9 C 0.12 1.98 5.23 -4.04 -0.02 1.96 16 10 C 0.06 0.97 2.35 -26.05 -0.06 0.91 16 11 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 12 C 0.17 3.79 4.50 -2.44 -0.01 3.78 16 13 N -0.59 -14.14 2.59 -171.48 -0.44 -14.59 16 14 C -0.26 -6.94 9.43 -15.06 -0.14 -7.08 16 15 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 16 C 0.01 0.15 4.88 -17.43 -0.09 0.06 16 17 N -0.91 -25.91 10.98 55.49 0.61 -25.30 16 18 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.16 3.11 5.68 -4.14 -0.02 3.09 16 23 C -0.18 -3.06 6.03 -28.31 -0.17 -3.23 16 24 C 0.08 1.18 6.04 34.59 0.21 1.39 16 25 O -0.36 -6.49 9.76 -34.09 -0.33 -6.83 16 26 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.16 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.16 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.40 3.93 8.46 -40.82 -0.35 3.58 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 2.23 6.24 -51.93 -0.32 1.90 16 35 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 38 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.44 7.28 -51.93 -0.38 0.06 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -39.27 355.62 -8.30 -47.56 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.45 Total: -0.87 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 0.91 Total: 2.50 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.17 Total: -49.39 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -2.43 Total: -43.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 22.11 SS G_CDS: -0.49 Total: 21.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.27 -8.30 -47.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149301236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.375 kcal (2) G-P(sol) polarization free energy of solvation -39.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds