Wall clock time and date at job start Fri Apr 10 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47462 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.47113 * 30.00368 * 3 2 1 6 6 H 1.48497 * 109.47027 * 150.00443 * 3 2 1 7 7 C 1.38810 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47300 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00038 * 180.02562 * 13 12 11 15 15 O 1.21580 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.47625 * 119.99890 * 180.02562 * 14 13 12 17 17 C 1.39532 * 120.51264 * 0.02562 * 16 14 13 18 18 N 1.31704 * 120.95249 * 179.97438 * 17 16 14 19 19 C 1.32310 * 121.83527 * 0.02562 * 18 17 16 20 20 C 1.39845 * 120.55233 * 0.02562 * 19 18 17 21 21 C 1.38202 * 119.59785 * 359.97058 * 20 19 18 22 22 N 1.40132 * 119.52798 * 179.97438 * 20 19 18 23 23 C 1.35142 * 118.86610 * 15.56443 * 22 20 19 24 24 O 1.21292 * 120.19816 * 181.69253 * 23 22 20 25 25 C 1.50770 * 119.60570 * 1.67661 * 23 22 20 26 26 O 1.35762 * 120.37733 * 180.02562 * 19 18 17 27 27 H 0.96993 * 120.00453 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99882 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47879 * 59.99349 * 10 9 7 30 30 H 1.09002 * 109.47253 * 299.99033 * 10 9 7 31 31 H 1.09001 * 109.46864 * 59.99438 * 11 10 9 32 32 H 1.08993 * 109.46709 * 300.00072 * 11 10 9 33 33 H 1.09001 * 109.47214 * 60.00151 * 12 11 10 34 34 H 1.09005 * 109.47320 * 300.00138 * 12 11 10 35 35 H 0.96995 * 119.99397 * 0.02562 * 13 12 11 36 36 H 1.07997 * 119.52566 * 0.25299 * 17 16 14 37 37 H 1.07996 * 120.95437 * 180.02562 * 21 20 19 38 38 H 0.96995 * 120.56826 * 195.55162 * 22 20 19 39 39 H 1.08997 * 109.42790 * 208.42862 * 25 23 22 40 40 H 1.09002 * 109.38994 * 88.55051 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8198 0.0001 12 6 1.8290 -6.1447 -0.0005 13 7 0.8771 -7.2583 0.0007 14 6 1.3264 -8.5289 0.0009 15 8 2.5217 -8.7510 -0.0004 16 6 0.3671 -9.6510 0.0016 17 6 -1.0069 -9.4084 0.0015 18 7 -1.8704 -10.4029 0.0016 19 6 -1.4792 -11.6668 0.0023 20 6 -0.1186 -11.9898 0.0035 21 6 0.8231 -10.9783 0.0034 22 7 0.2718 -13.3357 0.0048 23 6 -0.6412 -14.2801 -0.3127 24 8 -0.3378 -15.4543 -0.2894 25 6 -2.0393 -13.8656 -0.6958 26 8 -2.3951 -12.6690 0.0018 27 1 -0.4850 0.8399 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6850 -3.7145 0.8893 30 1 2.6848 -3.7145 -0.8906 31 1 0.4370 -4.7622 -0.8896 32 1 0.4378 -4.7618 0.8903 33 1 2.4563 -6.2025 0.8890 34 1 2.4551 -6.2024 -0.8910 35 1 -0.0765 -7.0810 0.0014 36 1 -1.3677 -8.3905 -0.0033 37 1 1.8795 -11.2028 0.0039 38 1 1.1818 -13.5852 0.2295 39 1 -2.7379 -14.6597 -0.4324 40 1 -2.0821 -13.6865 -1.7701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161899019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:28 Heat of formation + Delta-G solvation = -47.437349 kcal Electronic energy + Delta-G solvation = -24925.096690 eV Core-core repulsion = 20934.009105 eV Total energy + Delta-G solvation = -3991.087585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.35176 -40.51089 -39.44734 -38.37366 -36.33526 -36.14199 -34.49951 -32.81981 -32.05390 -30.93267 -29.64858 -28.63674 -25.96188 -24.84801 -24.30629 -22.85240 -21.84387 -21.27420 -20.33097 -19.79898 -18.87005 -18.04064 -17.42613 -17.31532 -16.92577 -16.45129 -15.97140 -15.82330 -15.62128 -15.29097 -14.83621 -14.71791 -14.50546 -14.15757 -13.92536 -13.71909 -13.52746 -13.30297 -13.05033 -12.58954 -12.17871 -12.06024 -11.73392 -11.05592 -10.98231 -10.96587 -10.86310 -10.68147 -10.62797 -10.14153 -10.11995 -9.99758 -9.73886 -9.28089 -8.90961 -8.83107 -6.96788 -5.80062 -3.09224 -0.13290 0.33169 1.43820 1.92642 2.15499 2.40873 2.81324 3.07859 3.21950 3.42217 3.47497 3.49115 3.70225 4.00977 4.10158 4.17904 4.24475 4.37786 4.52587 4.56492 4.86187 5.04411 5.22041 5.28708 5.41911 5.53917 5.54324 5.59904 5.85449 5.96024 5.97691 6.12272 6.24701 6.26599 6.29054 6.73195 6.77427 6.98182 7.14839 7.20407 7.67534 7.87015 8.38847 9.50103 10.06692 10.41114 11.42828 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.041301 B = 0.001743 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.787891 B =16064.180663 C =16687.730486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.717 5.717 14 C 0.564 3.436 15 O -0.533 6.533 16 C -0.174 4.174 17 C 0.154 3.846 18 N -0.463 5.463 19 C 0.314 3.686 20 C 0.043 3.957 21 C -0.022 4.022 22 N -0.655 5.655 23 C 0.492 3.508 24 O -0.502 6.502 25 C 0.055 3.945 26 O -0.285 6.285 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.421 0.579 39 H 0.158 0.842 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 -28.990 -1.280 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.178 4.178 12 C -0.001 4.001 13 N -0.369 5.369 14 C 0.349 3.651 15 O -0.411 6.411 16 C -0.181 4.181 17 C -0.004 4.004 18 N -0.180 5.180 19 C 0.132 3.868 20 C -0.055 4.055 21 C -0.050 4.050 22 N -0.303 5.303 23 C 0.279 3.721 24 O -0.375 6.375 25 C -0.024 4.024 26 O -0.194 6.194 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.193 0.807 37 H 0.179 0.821 38 H 0.261 0.739 39 H 0.175 0.825 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.345 -29.568 -1.223 29.911 hybrid contribution 1.105 0.742 0.025 1.332 sum -3.240 -28.826 -1.198 29.032 Atomic orbital electron populations 1.69653 1.05126 1.25731 1.57725 1.24754 0.95561 0.97771 1.02919 0.86166 0.78656 0.83688 0.77541 1.21684 1.21739 1.20724 1.19241 0.91111 0.84110 1.42799 0.91083 1.42327 1.05865 0.99956 1.89642 1.20515 0.93237 0.85171 0.98267 1.21967 0.99670 0.93177 1.02940 1.21454 0.91571 0.84205 1.02887 1.45987 1.11050 1.05497 1.74337 1.17749 0.87724 0.82535 0.77094 1.90817 1.15859 1.84650 1.49728 1.20877 0.95023 0.94249 1.07908 1.22857 0.87546 0.97790 0.92227 1.66909 1.38933 0.97028 1.15122 1.19350 0.83718 0.87979 0.95787 1.18705 0.93519 0.85330 1.07976 1.21182 1.00458 0.89663 0.93723 1.43713 1.15357 1.03708 1.67554 1.21543 0.88104 0.85765 0.76737 1.90857 1.80261 1.16594 1.49808 1.23410 0.93506 0.86237 0.99239 1.86186 1.40890 1.21939 1.70373 0.93477 0.78272 0.96023 0.96020 0.91105 0.91091 0.90910 0.90907 0.76336 0.80659 0.82149 0.73912 0.82487 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.05 5.60 -59.91 -0.34 -18.38 16 10 C 0.16 2.94 6.26 -4.04 -0.03 2.91 16 11 C -0.14 -1.91 5.44 -26.73 -0.15 -2.05 16 12 C 0.12 1.43 5.67 -4.04 -0.02 1.41 16 13 N -0.72 -6.77 5.51 -61.32 -0.34 -7.11 16 14 C 0.56 5.94 7.77 -12.43 -0.10 5.85 16 15 O -0.53 -7.50 16.42 5.30 0.09 -7.41 16 16 C -0.17 -1.43 5.89 -104.79 -0.62 -2.05 16 17 C 0.15 1.12 10.70 -17.12 -0.18 0.94 16 18 N -0.46 -4.13 10.37 -12.74 -0.13 -4.26 16 19 C 0.31 2.62 7.54 -16.74 -0.13 2.49 16 20 C 0.04 0.31 6.54 -83.47 -0.55 -0.24 16 21 C -0.02 -0.16 9.61 -38.80 -0.37 -0.53 16 22 N -0.65 -4.02 5.48 -9.63 -0.05 -4.07 16 23 C 0.49 3.39 7.95 -10.79 -0.09 3.30 16 24 O -0.50 -4.99 17.95 5.55 0.10 -4.89 16 25 C 0.05 0.25 7.16 36.04 0.26 0.50 16 26 O -0.28 -2.15 10.50 -19.00 -0.20 -2.35 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.81 7.67 -40.82 -0.31 9.50 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 2.70 6.52 -40.82 -0.27 2.43 16 36 H 0.18 0.79 6.40 -52.49 -0.34 0.46 16 37 H 0.16 1.04 7.74 -52.49 -0.41 0.64 16 38 H 0.42 1.94 8.89 -40.82 -0.36 1.57 16 39 H 0.16 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -36.00 350.28 -6.71 -42.71 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.61 Total: 5.22 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -2.21 Total: 5.21 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.13 Total: -60.91 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.01 Total: -14.65 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.00 -6.71 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161899019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.724 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds