Wall clock time and date at job start Fri Apr 10 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47462 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.47113 * 30.00368 * 3 2 1 6 6 H 1.48497 * 109.47027 * 150.00443 * 3 2 1 7 7 C 1.38810 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47300 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00038 * 180.02562 * 13 12 11 15 15 O 1.21580 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.47625 * 119.99890 * 180.02562 * 14 13 12 17 17 C 1.39532 * 120.51264 * 0.02562 * 16 14 13 18 18 N 1.31704 * 120.95249 * 179.97438 * 17 16 14 19 19 C 1.32310 * 121.83527 * 0.02562 * 18 17 16 20 20 C 1.39845 * 120.55233 * 0.02562 * 19 18 17 21 21 C 1.38202 * 119.59785 * 359.97058 * 20 19 18 22 22 N 1.40132 * 119.52798 * 179.97438 * 20 19 18 23 23 C 1.35142 * 118.86610 * 15.56443 * 22 20 19 24 24 O 1.21292 * 120.19816 * 181.69253 * 23 22 20 25 25 C 1.50770 * 119.60570 * 1.67661 * 23 22 20 26 26 O 1.35762 * 120.37733 * 180.02562 * 19 18 17 27 27 H 0.96993 * 120.00453 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99882 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47879 * 59.99349 * 10 9 7 30 30 H 1.09002 * 109.47253 * 299.99033 * 10 9 7 31 31 H 1.09001 * 109.46864 * 59.99438 * 11 10 9 32 32 H 1.08993 * 109.46709 * 300.00072 * 11 10 9 33 33 H 1.09001 * 109.47214 * 60.00151 * 12 11 10 34 34 H 1.09005 * 109.47320 * 300.00138 * 12 11 10 35 35 H 0.96995 * 119.99397 * 0.02562 * 13 12 11 36 36 H 1.07997 * 119.52566 * 0.25299 * 17 16 14 37 37 H 1.07996 * 120.95437 * 180.02562 * 21 20 19 38 38 H 0.96995 * 120.56826 * 195.55162 * 22 20 19 39 39 H 1.08997 * 109.42790 * 208.42862 * 25 23 22 40 40 H 1.09002 * 109.38994 * 88.55051 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8198 0.0001 12 6 1.8290 -6.1447 -0.0005 13 7 0.8771 -7.2583 0.0007 14 6 1.3264 -8.5289 0.0009 15 8 2.5217 -8.7510 -0.0004 16 6 0.3671 -9.6510 0.0016 17 6 -1.0069 -9.4084 0.0015 18 7 -1.8704 -10.4029 0.0016 19 6 -1.4792 -11.6668 0.0023 20 6 -0.1186 -11.9898 0.0035 21 6 0.8231 -10.9783 0.0034 22 7 0.2718 -13.3357 0.0048 23 6 -0.6412 -14.2801 -0.3127 24 8 -0.3378 -15.4543 -0.2894 25 6 -2.0393 -13.8656 -0.6958 26 8 -2.3951 -12.6690 0.0018 27 1 -0.4850 0.8399 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6850 -3.7145 0.8893 30 1 2.6848 -3.7145 -0.8906 31 1 0.4370 -4.7622 -0.8896 32 1 0.4378 -4.7618 0.8903 33 1 2.4563 -6.2025 0.8890 34 1 2.4551 -6.2024 -0.8910 35 1 -0.0765 -7.0810 0.0014 36 1 -1.3677 -8.3905 -0.0033 37 1 1.8795 -11.2028 0.0039 38 1 1.1818 -13.5852 0.2295 39 1 -2.7379 -14.6597 -0.4324 40 1 -2.0821 -13.6865 -1.7701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161899019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:28 Heat of formation + Delta-G solvation = -78.341594 kcal Electronic energy + Delta-G solvation = -24926.436799 eV Core-core repulsion = 20934.009105 eV Total energy + Delta-G solvation = -3992.427694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.90961 -41.22412 -40.15724 -38.97659 -37.49411 -36.87596 -35.94137 -33.89631 -33.26245 -31.78419 -30.92025 -29.22276 -27.16726 -25.89544 -24.95343 -24.31549 -22.64414 -22.55852 -21.05350 -20.35301 -19.58502 -19.08498 -18.54943 -17.96934 -17.89190 -17.17211 -16.84825 -16.70794 -16.46301 -16.20577 -15.83453 -15.69491 -15.45296 -15.26801 -14.97125 -14.83533 -14.49719 -14.27290 -14.08039 -13.81781 -13.27256 -12.81004 -12.71944 -12.60047 -12.56919 -12.38478 -12.05485 -12.00439 -11.79221 -11.57991 -11.44118 -10.91739 -10.77467 -10.72981 -10.15962 -9.39811 -8.98375 -7.94444 -5.22954 -0.74553 -0.24535 0.91367 1.42267 1.49799 1.50907 1.59438 1.62573 1.69094 2.02235 2.50638 2.58060 2.64172 3.14809 3.39704 3.47355 3.49084 3.63768 3.78408 3.86196 3.92384 4.15016 4.20164 4.28644 4.34345 4.50732 4.71402 4.78616 4.79029 4.89310 4.93556 5.10626 5.28286 5.37286 5.40120 5.46464 5.51864 5.75399 6.28654 6.42118 6.47185 6.59810 7.08175 7.35360 8.11245 8.34183 9.28903 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.041301 B = 0.001743 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.787891 B =16064.180663 C =16687.730486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.150 3.850 11 C -0.121 4.121 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.568 3.432 15 O -0.572 6.572 16 C -0.182 4.182 17 C 0.165 3.835 18 N -0.483 5.483 19 C 0.310 3.690 20 C 0.046 3.954 21 C -0.018 4.018 22 N -0.650 5.650 23 C 0.492 3.508 24 O -0.536 6.536 25 C 0.055 3.945 26 O -0.295 6.295 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.416 0.584 36 H 0.202 0.798 37 H 0.167 0.833 38 H 0.426 0.574 39 H 0.182 0.818 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -29.608 -1.484 29.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.023 3.977 11 C -0.159 4.159 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.355 3.645 15 O -0.452 6.452 16 C -0.188 4.188 17 C 0.006 3.994 18 N -0.201 5.201 19 C 0.127 3.873 20 C -0.052 4.052 21 C -0.046 4.046 22 N -0.299 5.299 23 C 0.281 3.719 24 O -0.413 6.413 25 C -0.023 4.023 26 O -0.205 6.205 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.218 0.782 37 H 0.184 0.816 38 H 0.267 0.733 39 H 0.199 0.801 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.593 -30.208 -1.427 30.588 hybrid contribution 1.197 0.849 0.088 1.470 sum -3.396 -29.360 -1.338 29.586 Atomic orbital electron populations 1.69795 1.06487 1.26125 1.59395 1.25555 0.96449 1.01060 1.03647 0.85152 0.77710 0.79528 0.77437 1.21400 1.22123 1.19559 1.19647 0.91572 0.85479 1.41350 0.90723 1.42539 1.05765 1.01152 1.89518 1.20698 0.94168 0.84763 0.98027 1.21727 0.98535 0.92053 1.03595 1.21166 0.91523 0.83892 1.02505 1.45795 1.11579 1.04725 1.73784 1.17982 0.87473 0.82999 0.76067 1.90802 1.17576 1.85189 1.51679 1.20666 0.94935 0.93626 1.09578 1.23208 0.86919 0.98626 0.90618 1.66977 1.39449 0.97505 1.16162 1.19550 0.84224 0.88189 0.95288 1.18577 0.93079 0.85501 1.08086 1.21275 1.00868 0.89547 0.92907 1.43711 1.15756 1.03357 1.67068 1.21958 0.88915 0.85228 0.75841 1.90845 1.81004 1.17891 1.51513 1.23716 0.92450 0.85697 1.00411 1.86180 1.41017 1.22429 1.70834 0.93949 0.79174 0.96003 0.95950 0.90429 0.90469 0.91424 0.91361 0.74562 0.78182 0.81578 0.73258 0.80091 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -36.49 5.60 -343.46 -1.92 -38.41 16 10 C 0.15 5.52 6.26 86.38 0.54 6.06 16 11 C -0.12 -3.12 5.44 30.59 0.17 -2.95 16 12 C 0.13 2.92 5.67 86.38 0.49 3.41 16 13 N -0.71 -12.01 5.51 -466.18 -2.57 -14.58 16 14 C 0.57 11.22 7.77 86.72 0.67 11.89 16 15 O -0.57 -15.72 16.42 -3.97 -0.07 -15.78 16 16 C -0.18 -2.70 5.89 -19.98 -0.12 -2.82 16 17 C 0.16 2.06 10.70 85.02 0.91 2.97 16 18 N -0.48 -7.78 10.37 -307.01 -3.18 -10.96 16 19 C 0.31 4.69 7.54 85.01 0.64 5.33 16 20 C 0.05 0.60 6.54 38.19 0.25 0.85 16 21 C -0.02 -0.24 9.61 22.77 0.22 -0.02 16 22 N -0.65 -7.33 5.48 -302.56 -1.66 -8.99 16 23 C 0.49 6.24 7.95 87.62 0.70 6.94 16 24 O -0.54 -10.36 17.95 -3.07 -0.06 -10.42 16 25 C 0.05 0.39 7.16 71.26 0.51 0.90 16 26 O -0.30 -3.96 10.50 -90.89 -0.95 -4.91 16 27 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.38 19.22 7.67 -92.71 -0.71 18.51 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.42 4.52 6.52 -92.71 -0.60 3.92 16 36 H 0.20 1.26 6.40 -2.91 -0.02 1.24 16 37 H 0.17 2.02 7.74 -2.91 -0.02 2.00 16 38 H 0.43 3.64 8.89 -92.71 -0.82 2.81 16 39 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -76.81 350.28 -2.82 -79.63 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -1.01 Total: 18.63 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.29 Total: 15.98 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -9.05 Total: -130.57 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.07 Total: -31.11 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.81 -2.82 -79.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161899019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.285 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds