Wall clock time and date at job start Fri Apr 10 2020 18:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47529 * 2 1 4 4 C 1.34769 * 120.00447 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00251 * 180.02562 * 4 3 2 7 7 O 1.42904 * 109.46943 * 180.02562 * 6 4 3 8 8 C 1.42911 * 113.99628 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.52210 * 30.07782 * 8 7 6 10 10 C 1.53043 * 109.49599 * 269.99901 * 8 7 6 11 11 C 1.53044 * 109.53628 * 178.68305 * 10 8 7 12 12 C 1.53192 * 109.30830 * 61.36646 * 11 10 8 13 13 N 1.46921 * 108.77749 * 305.36325 * 12 11 10 14 14 S 1.65606 * 120.63289 * 233.58977 * 13 12 11 15 15 O 1.42105 * 106.40008 * 336.45758 * 14 13 12 16 16 O 1.42098 * 106.40370 * 203.53944 * 14 13 12 17 17 C 1.76193 * 107.21910 * 89.99915 * 14 13 12 18 18 H 1.08002 * 120.00351 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00314 * 180.02562 * 17 14 13 20 20 N 1.31506 * 120.00315 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99549 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47295 * 90.00054 * 21 19 17 23 23 H 1.48505 * 109.47129 * 210.00207 * 21 19 17 24 24 H 1.48504 * 109.47322 * 330.00304 * 21 19 17 25 25 C 1.46923 * 118.74101 * 53.86380 * 13 12 11 26 26 H 1.09004 * 109.47000 * 300.00113 * 1 2 3 27 27 H 1.09007 * 109.46668 * 59.99899 * 1 2 3 28 28 H 1.08992 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47419 * 239.99632 * 2 1 3 30 30 H 1.09004 * 109.47122 * 119.99886 * 2 1 3 31 31 H 0.97003 * 119.99677 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47077 * 60.00095 * 6 4 3 33 33 H 1.09004 * 109.46902 * 300.00082 * 6 4 3 34 34 H 1.09005 * 109.45835 * 58.66472 * 10 8 7 35 35 H 1.08997 * 109.46008 * 298.70346 * 10 8 7 36 36 H 1.08993 * 109.49377 * 301.41584 * 11 10 8 37 37 H 1.08997 * 109.52087 * 181.33175 * 11 10 8 38 38 H 1.09003 * 109.58717 * 185.57630 * 12 11 10 39 39 H 1.09002 * 109.59178 * 65.15302 * 12 11 10 40 40 H 0.96999 * 119.99997 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58696 * 65.92455 * 25 13 12 42 42 H 1.09000 * 109.58966 * 186.35637 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8458 3.0483 0.0011 7 8 5.2748 3.0482 0.0010 8 6 5.8561 4.3537 0.0009 9 1 5.1922 5.0480 0.5158 10 6 6.0638 4.8203 -1.4418 11 6 6.6558 6.2316 -1.4430 12 6 8.0173 6.2104 -0.7410 13 7 7.8503 5.6273 0.5972 14 16 8.3760 6.4376 1.9423 15 8 9.3894 7.3312 1.5019 16 8 8.5893 5.4541 2.9455 17 6 7.0392 7.4389 2.5036 18 1 6.0987 7.4311 1.9729 19 6 7.1939 8.2326 3.6205 20 7 6.1960 8.9795 4.0397 21 14 8.8205 8.2456 4.5389 22 1 9.6999 9.3001 3.9733 23 1 8.5749 8.5244 5.9767 24 1 9.4798 6.9226 4.3968 25 6 7.2136 4.3088 0.7189 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3881 2.1185 -0.0004 32 1 3.4822 3.5618 0.8911 33 1 3.4827 3.5624 -0.8889 34 1 5.1061 4.8278 -1.9624 35 1 6.7473 4.1393 -1.9488 36 1 5.9844 6.9082 -0.9145 37 1 6.7816 6.5729 -2.4705 38 1 8.3980 7.2278 -0.6513 39 1 8.7168 5.6058 -1.3183 40 1 6.3050 9.5381 4.8252 41 1 7.8488 3.5523 0.2581 42 1 7.0637 4.0711 1.7720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:43 Heat of formation + Delta-G solvation = -164.039640 kcal Electronic energy + Delta-G solvation = -25726.623699 eV Core-core repulsion = 21833.631059 eV Total energy + Delta-G solvation = -3892.992640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.93344 -38.73961 -36.45954 -35.71734 -35.40713 -34.45161 -33.05941 -31.78802 -31.31911 -30.07969 -27.47845 -26.41151 -24.16656 -23.14873 -22.63795 -20.89668 -20.38730 -18.53365 -17.73357 -17.29971 -16.86505 -16.70085 -16.23775 -15.69873 -15.27752 -15.22534 -15.13502 -14.67732 -14.01902 -13.89077 -13.70625 -13.51244 -13.10951 -12.90012 -12.86406 -12.83052 -12.71106 -12.44951 -12.20038 -11.82431 -11.67414 -11.41045 -11.07178 -10.95520 -10.86093 -10.74654 -10.60423 -10.51442 -10.42761 -9.90948 -9.82092 -9.51383 -9.33304 -9.22621 -9.10634 -8.30802 -6.82946 -5.36482 1.94519 2.48511 2.65698 3.06323 3.16647 3.26543 3.81176 3.94238 4.22441 4.52072 4.57365 4.71494 4.72727 4.89572 4.97026 4.97769 5.01885 5.14036 5.18233 5.37969 5.39671 5.44614 5.47234 5.55238 5.65922 5.67382 5.73002 5.87467 6.04439 6.07674 6.14075 6.16371 6.18041 6.21158 6.46615 6.64214 7.04093 7.26873 7.37464 7.45983 8.05816 8.17610 8.68376 10.29229 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.003338 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.244792 B = 8386.356317 C = 9072.166372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.735 5.735 4 C 0.514 3.486 5 O -0.517 6.517 6 C 0.043 3.957 7 O -0.356 6.356 8 C 0.073 3.927 9 H 0.075 0.925 10 C -0.135 4.135 11 C -0.133 4.133 12 C 0.123 3.877 13 N -0.998 5.998 14 S 2.675 3.325 15 O -1.007 7.007 16 O -1.003 7.003 17 C -1.014 5.014 18 H 0.120 0.880 19 C 0.154 3.846 20 N -0.824 5.824 21 Si 0.800 3.200 22 H -0.246 1.246 23 H -0.255 1.255 24 H -0.219 1.219 25 C 0.135 3.865 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.280 0.720 41 H 0.072 0.928 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -10.289 -10.846 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.391 5.391 4 C 0.299 3.701 5 O -0.391 6.391 6 C -0.037 4.037 7 O -0.273 6.273 8 C 0.013 3.987 9 H 0.093 0.907 10 C -0.173 4.173 11 C -0.172 4.172 12 C -0.003 4.003 13 N -0.834 5.834 14 S 2.778 3.222 15 O -0.997 6.997 16 O -0.994 6.994 17 C -1.148 5.148 18 H 0.138 0.862 19 C -0.066 4.066 20 N -0.453 5.453 21 Si 0.620 3.380 22 H -0.170 1.170 23 H -0.179 1.179 24 H -0.141 1.141 25 C 0.008 3.992 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.626 -11.137 -10.369 18.006 hybrid contribution -0.801 1.075 0.417 1.403 sum -10.427 -10.063 -9.952 17.579 Atomic orbital electron populations 1.22009 0.94350 1.03281 1.02614 1.21288 0.94186 0.82776 1.02550 1.45948 1.06856 1.09123 1.77141 1.20402 0.82205 0.91195 0.76259 1.90740 1.55107 1.46072 1.47161 1.22216 0.84610 0.94071 1.02803 1.87984 1.16207 1.27993 1.95146 1.22742 0.95963 0.83660 0.96296 0.90742 1.21962 1.01257 0.97345 0.96721 1.21925 0.97851 0.96544 1.00909 1.21317 0.96292 0.99616 0.83100 1.57746 1.76288 1.28712 1.20682 1.01510 0.75598 0.73827 0.71293 1.93402 1.59572 1.65265 1.81451 1.93465 1.87082 1.62292 1.56524 1.30523 1.19017 1.41723 1.23580 0.86189 1.24420 0.96651 0.91217 0.94283 1.69978 1.31077 1.21580 1.22650 0.87889 0.84099 0.83981 0.82060 1.17010 1.17888 1.14105 1.21166 0.91279 0.84661 1.02081 0.91834 0.91943 0.90751 0.91491 0.91384 0.76476 0.89829 0.90359 0.92100 0.91019 0.90802 0.90814 0.88712 0.91956 0.90919 0.90989 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.03 37.16 0.37 -0.39 16 2 C 0.12 0.89 6.39 -4.04 -0.03 0.86 16 3 N -0.74 -6.20 5.56 -60.30 -0.33 -6.54 16 4 C 0.51 6.43 7.91 -10.99 -0.09 6.34 16 5 O -0.52 -8.93 16.50 -14.36 -0.24 -9.17 16 6 C 0.04 0.50 6.23 36.00 0.22 0.72 16 7 O -0.36 -5.45 9.53 -55.14 -0.53 -5.97 16 8 C 0.07 1.10 2.77 -26.38 -0.07 1.02 16 9 H 0.07 1.12 7.79 -51.93 -0.40 0.71 16 10 C -0.13 -1.72 5.50 -26.69 -0.15 -1.87 16 11 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 12 C 0.12 1.97 6.37 -3.71 -0.02 1.95 16 13 N -1.00 -19.46 3.28 -113.27 -0.37 -19.83 16 14 S 2.67 66.49 4.19 -107.50 -0.45 66.04 16 15 O -1.01 -26.48 15.55 -57.17 -0.89 -27.37 16 16 O -1.00 -26.89 14.73 -57.17 -0.84 -27.74 16 17 C -1.01 -27.61 10.29 30.60 0.31 -27.29 16 18 H 0.12 3.26 8.06 -52.49 -0.42 2.83 16 19 C 0.15 4.35 5.47 -17.82 -0.10 4.25 16 20 N -0.82 -23.34 13.96 55.43 0.77 -22.57 16 21 Si 0.80 20.45 26.54 -169.99 -4.51 15.94 16 22 H -0.25 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.25 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 25 C 0.13 2.39 6.06 -3.49 -0.02 2.37 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 2.12 8.47 -40.82 -0.35 1.77 16 32 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 34 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.60 7.13 -51.93 -0.37 1.23 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.10 1.89 7.12 -51.93 -0.37 1.52 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -35.77 354.81 -8.36 -44.13 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.59 Total: 1.68 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 0.27 Total: -13.96 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.07 Total: -48.94 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -2.49 Total: -70.24 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.51 Total: 15.94 kcal Atomic # 16 Polarization: 66.49 SS G_CDS: -0.45 Total: 66.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.77 -8.36 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.910 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds