Wall clock time and date at job start Fri Apr 10 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47529 * 2 1 4 4 C 1.34769 * 120.00447 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00251 * 180.02562 * 4 3 2 7 7 O 1.42904 * 109.46943 * 180.02562 * 6 4 3 8 8 C 1.42911 * 113.99628 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.52210 * 30.07782 * 8 7 6 10 10 C 1.53043 * 109.49599 * 269.99901 * 8 7 6 11 11 C 1.53044 * 109.53628 * 178.68305 * 10 8 7 12 12 C 1.53192 * 109.30830 * 61.36646 * 11 10 8 13 13 N 1.46921 * 108.77749 * 305.36325 * 12 11 10 14 14 S 1.65606 * 120.63289 * 233.58977 * 13 12 11 15 15 O 1.42105 * 106.40008 * 336.45758 * 14 13 12 16 16 O 1.42098 * 106.40370 * 203.53944 * 14 13 12 17 17 C 1.76193 * 107.21910 * 89.99915 * 14 13 12 18 18 H 1.08002 * 120.00351 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00314 * 180.02562 * 17 14 13 20 20 N 1.31506 * 120.00315 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99549 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47295 * 90.00054 * 21 19 17 23 23 H 1.48505 * 109.47129 * 210.00207 * 21 19 17 24 24 H 1.48504 * 109.47322 * 330.00304 * 21 19 17 25 25 C 1.46923 * 118.74101 * 53.86380 * 13 12 11 26 26 H 1.09004 * 109.47000 * 300.00113 * 1 2 3 27 27 H 1.09007 * 109.46668 * 59.99899 * 1 2 3 28 28 H 1.08992 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47419 * 239.99632 * 2 1 3 30 30 H 1.09004 * 109.47122 * 119.99886 * 2 1 3 31 31 H 0.97003 * 119.99677 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47077 * 60.00095 * 6 4 3 33 33 H 1.09004 * 109.46902 * 300.00082 * 6 4 3 34 34 H 1.09005 * 109.45835 * 58.66472 * 10 8 7 35 35 H 1.08997 * 109.46008 * 298.70346 * 10 8 7 36 36 H 1.08993 * 109.49377 * 301.41584 * 11 10 8 37 37 H 1.08997 * 109.52087 * 181.33175 * 11 10 8 38 38 H 1.09003 * 109.58717 * 185.57630 * 12 11 10 39 39 H 1.09002 * 109.59178 * 65.15302 * 12 11 10 40 40 H 0.96999 * 119.99997 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58696 * 65.92455 * 25 13 12 42 42 H 1.09000 * 109.58966 * 186.35637 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8458 3.0483 0.0011 7 8 5.2748 3.0482 0.0010 8 6 5.8561 4.3537 0.0009 9 1 5.1922 5.0480 0.5158 10 6 6.0638 4.8203 -1.4418 11 6 6.6558 6.2316 -1.4430 12 6 8.0173 6.2104 -0.7410 13 7 7.8503 5.6273 0.5972 14 16 8.3760 6.4376 1.9423 15 8 9.3894 7.3312 1.5019 16 8 8.5893 5.4541 2.9455 17 6 7.0392 7.4389 2.5036 18 1 6.0987 7.4311 1.9729 19 6 7.1939 8.2326 3.6205 20 7 6.1960 8.9795 4.0397 21 14 8.8205 8.2456 4.5389 22 1 9.6999 9.3001 3.9733 23 1 8.5749 8.5244 5.9767 24 1 9.4798 6.9226 4.3968 25 6 7.2136 4.3088 0.7189 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3881 2.1185 -0.0004 32 1 3.4822 3.5618 0.8911 33 1 3.4827 3.5624 -0.8889 34 1 5.1061 4.8278 -1.9624 35 1 6.7473 4.1393 -1.9488 36 1 5.9844 6.9082 -0.9145 37 1 6.7816 6.5729 -2.4705 38 1 8.3980 7.2278 -0.6513 39 1 8.7168 5.6058 -1.3183 40 1 6.3050 9.5381 4.8252 41 1 7.8488 3.5523 0.2581 42 1 7.0637 4.0711 1.7720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:42 Heat of formation + Delta-G solvation = -192.784896 kcal Electronic energy + Delta-G solvation = -25727.870186 eV Core-core repulsion = 21833.631059 eV Total energy + Delta-G solvation = -3894.239128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.91989 -39.89269 -37.80492 -37.58794 -36.50956 -36.26498 -35.18714 -33.05556 -32.12495 -31.16387 -28.54088 -28.37210 -25.47940 -23.99549 -23.60802 -21.82568 -21.71318 -20.35391 -19.44180 -18.73762 -18.25412 -17.82875 -17.24259 -17.14251 -16.76760 -16.63995 -15.98395 -15.90806 -15.47909 -15.40002 -14.98752 -14.92678 -14.84216 -14.52074 -13.93474 -13.91230 -13.68321 -13.42461 -13.38481 -13.30902 -12.91293 -12.73695 -12.68868 -12.58795 -12.38057 -12.11917 -12.02002 -11.93340 -11.84340 -11.61659 -11.33502 -11.14854 -10.90943 -10.58571 -10.14366 -9.81089 -8.96792 -7.51197 0.05714 1.04182 1.13030 1.21177 1.53565 1.77763 1.88728 2.38118 2.42144 2.97594 3.38569 3.68197 3.74186 3.87540 4.04521 4.06222 4.14398 4.16067 4.21486 4.25816 4.31247 4.34647 4.37499 4.52472 4.58012 4.81818 4.83387 4.93683 4.95562 5.04250 5.06220 5.13300 5.23369 5.27443 5.39817 5.42121 5.43294 5.76827 6.02546 6.10108 6.52872 6.54216 7.20598 8.20319 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.003338 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.244792 B = 8386.356317 C = 9072.166372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 N -0.716 5.716 4 C 0.511 3.489 5 O -0.575 6.575 6 C 0.037 3.963 7 O -0.380 6.380 8 C 0.078 3.922 9 H 0.070 0.930 10 C -0.128 4.128 11 C -0.127 4.127 12 C 0.108 3.892 13 N -0.993 5.993 14 S 2.691 3.309 15 O -1.024 7.024 16 O -1.028 7.028 17 C -1.030 5.030 18 H 0.110 0.890 19 C 0.112 3.888 20 N -0.850 5.850 21 Si 0.818 3.182 22 H -0.239 1.239 23 H -0.220 1.220 24 H -0.232 1.232 25 C 0.126 3.874 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.419 0.581 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.291 0.709 41 H 0.085 0.915 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 -10.264 -12.413 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.371 5.371 4 C 0.297 3.703 5 O -0.454 6.454 6 C -0.042 4.042 7 O -0.298 6.298 8 C 0.019 3.981 9 H 0.088 0.912 10 C -0.166 4.166 11 C -0.166 4.166 12 C -0.016 4.016 13 N -0.833 5.833 14 S 2.793 3.207 15 O -1.014 7.014 16 O -1.018 7.018 17 C -1.163 5.163 18 H 0.128 0.872 19 C -0.105 4.105 20 N -0.480 5.480 21 Si 0.635 3.365 22 H -0.162 1.162 23 H -0.143 1.143 24 H -0.155 1.155 25 C 0.000 4.000 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.256 0.744 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.975 -11.064 -11.917 19.618 hybrid contribution -0.492 0.998 0.834 1.391 sum -11.467 -10.067 -11.082 18.858 Atomic orbital electron populations 1.21957 0.91508 1.04281 1.03479 1.21402 0.96405 0.82050 1.01453 1.45865 1.05927 1.10275 1.75039 1.20708 0.82984 0.91095 0.75514 1.90715 1.56738 1.47617 1.50281 1.22488 0.82776 0.93795 1.05157 1.87942 1.18514 1.27939 1.95432 1.22603 0.94151 0.83731 0.97663 0.91178 1.21936 1.02904 0.96724 0.95016 1.21915 0.95581 0.96851 1.02263 1.21713 0.99022 0.99257 0.81635 1.57344 1.76413 1.28940 1.20595 1.00790 0.74831 0.73242 0.71876 1.93368 1.59901 1.66188 1.81951 1.93425 1.87252 1.62552 1.58612 1.30957 1.19732 1.42048 1.23527 0.87170 1.25073 0.98801 0.91390 0.95195 1.69990 1.32130 1.22287 1.23620 0.87593 0.81781 0.83508 0.83580 1.16191 1.14258 1.15484 1.21323 0.93466 0.83776 1.01475 0.91195 0.90754 0.89742 0.92342 0.92905 0.74351 0.88434 0.86785 0.89269 0.90407 0.91988 0.87252 0.89914 0.89370 0.89876 0.89692 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.03 71.98 0.72 -0.35 16 2 C 0.11 1.59 6.39 86.38 0.55 2.14 16 3 N -0.72 -10.95 5.56 -463.07 -2.57 -13.53 16 4 C 0.51 12.33 7.91 87.66 0.69 13.03 16 5 O -0.57 -20.15 16.50 15.99 0.26 -19.89 16 6 C 0.04 0.78 6.23 71.24 0.44 1.22 16 7 O -0.38 -11.20 9.53 -129.94 -1.24 -12.44 16 8 C 0.08 2.23 2.77 30.82 0.09 2.32 16 9 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 10 C -0.13 -2.85 5.50 30.62 0.17 -2.68 16 11 C -0.13 -3.00 6.08 30.67 0.19 -2.81 16 12 C 0.11 3.30 6.37 86.36 0.55 3.85 16 13 N -0.99 -38.32 3.28 -512.29 -1.68 -40.00 16 14 S 2.69 134.90 4.19 -56.49 -0.24 134.66 16 15 O -1.02 -53.99 15.55 -128.00 -1.99 -55.98 16 16 O -1.03 -56.01 14.73 -128.00 -1.89 -57.90 16 17 C -1.03 -56.88 10.29 67.74 0.70 -56.18 16 18 H 0.11 6.11 8.06 -2.91 -0.02 6.09 16 19 C 0.11 6.39 5.47 84.66 0.46 6.85 16 20 N -0.85 -48.26 13.96 21.45 0.30 -47.97 16 21 Si 0.82 41.05 26.54 68.60 1.82 42.87 16 22 H -0.24 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.22 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.23 -12.13 5.61 99.48 0.56 -11.57 16 25 C 0.13 4.42 6.06 86.51 0.52 4.94 16 26 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.42 3.33 8.47 -92.71 -0.79 2.55 16 32 H 0.10 1.76 8.09 -2.39 -0.02 1.74 16 33 H 0.11 1.56 7.85 -2.39 -0.02 1.54 16 34 H 0.09 1.52 7.85 -2.38 -0.02 1.50 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.72 7.13 -2.39 -0.02 2.71 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.29 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.08 2.99 7.12 -2.39 -0.02 2.97 16 Total: -1.00 -78.94 354.81 -2.05 -80.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.09 Total: 16.85 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 5.09 Total: -27.67 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.96 Total: -101.49 kcal Atomic # 8 Polarization: -141.36 SS G_CDS: -4.85 Total: -146.21 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.82 Total: 42.87 kcal Atomic # 16 Polarization: 134.90 SS G_CDS: -0.24 Total: 134.66 kcal Total: -78.94 -2.05 -80.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.801 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds