Wall clock time and date at job start Fri Apr 10 2020 18:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 N 1.46500 * 109.41956 * 178.67533 * 9 8 7 11 11 C 1.46501 * 120.00111 * 60.12664 * 10 9 8 12 12 S 1.65605 * 120.00042 * 240.13227 * 10 9 8 13 13 O 1.42100 * 106.39998 * 203.53546 * 12 10 9 14 14 O 1.42100 * 106.40105 * 336.45406 * 12 10 9 15 15 C 1.76195 * 107.21970 * 89.99677 * 12 10 9 16 16 H 1.08000 * 120.00082 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99951 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99953 * 179.97438 * 17 15 12 19 19 Si 1.86792 * 119.99850 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.47081 * 90.00171 * 19 17 15 21 21 H 1.48509 * 109.47008 * 209.99932 * 19 17 15 22 22 H 1.48494 * 109.47499 * 329.99893 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 24 24 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 25 25 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 26 26 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 28 28 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 29 29 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 30 30 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 31 31 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 32 32 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 33 33 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 34 34 H 1.09000 * 109.43268 * 58.76205 * 9 8 7 35 35 H 1.08999 * 109.46832 * 90.00300 * 11 10 9 36 36 H 1.08996 * 109.47225 * 210.00394 * 11 10 9 37 37 H 1.09002 * 109.46810 * 330.00402 * 11 10 9 38 38 H 0.96993 * 120.00125 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.50232 * 301.42239 * 23 9 8 40 40 H 1.09007 * 109.52628 * 181.33900 * 23 9 8 41 41 H 1.08994 * 109.58580 * 353.42544 * 24 6 4 42 42 H 1.09006 * 109.57831 * 113.70037 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 7 5.2357 6.1078 -2.1676 11 6 5.0578 5.6796 -3.5573 12 16 5.8567 7.6067 -1.8360 13 8 5.5994 8.4096 -2.9800 14 8 5.4089 7.9469 -0.5311 15 6 7.6072 7.4349 -1.7323 16 1 8.0645 6.4675 -1.8791 17 6 8.3932 8.5352 -1.4628 18 7 9.6997 8.4068 -1.3849 19 14 7.6022 10.2081 -1.2082 20 1 7.2854 10.3921 0.2309 21 1 8.5408 11.2716 -1.6483 22 1 6.3518 10.2909 -2.0049 23 6 3.3739 4.8767 -1.1676 24 6 2.9817 3.9658 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.6211 3.4617 0.9394 31 1 5.8248 2.0412 -0.1156 32 1 6.7501 4.1575 -1.1217 33 1 5.4671 3.4178 -2.1101 34 1 5.0665 5.6983 -0.1179 35 1 4.0642 5.9666 -3.9015 36 1 5.8113 6.1568 -4.1838 37 1 5.1655 4.5967 -3.6204 38 1 10.2527 9.1809 -1.1956 39 1 3.1753 4.3662 -2.1099 40 1 2.7912 5.7969 -1.1226 41 1 1.9466 3.6455 -0.1172 42 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:48 Heat of formation + Delta-G solvation = -156.564452 kcal Electronic energy + Delta-G solvation = -26288.048070 eV Core-core repulsion = 22395.379578 eV Total energy + Delta-G solvation = -3892.668491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72652 -38.66168 -36.64157 -35.72083 -35.23131 -34.46116 -33.04729 -32.13862 -31.08801 -30.92238 -26.43988 -26.41152 -24.61698 -23.52794 -23.00432 -21.27755 -19.71449 -18.76613 -18.13897 -17.49077 -17.05815 -16.83128 -16.73188 -15.46077 -15.17520 -14.99967 -14.79637 -14.29957 -13.96711 -13.82280 -13.63042 -13.38875 -13.20609 -13.04951 -12.99939 -12.79145 -12.26195 -12.16417 -12.01601 -11.91378 -11.83592 -11.49107 -11.33981 -11.27202 -10.83009 -10.80969 -10.70602 -10.62571 -10.56458 -10.45869 -10.28511 -9.81123 -9.23136 -9.14725 -8.85049 -8.31363 -6.82453 -5.36244 1.95687 2.02451 2.74018 3.05179 3.15372 3.24606 3.71215 3.92944 4.08547 4.56845 4.67813 4.69667 4.78014 4.88831 5.01353 5.02707 5.08073 5.23624 5.27850 5.38056 5.40005 5.45747 5.49435 5.65117 5.65629 5.75343 5.79559 5.87518 5.91802 5.98233 6.06712 6.13847 6.18858 6.26215 6.28390 6.49139 6.67381 7.24452 7.33402 7.46418 8.18945 8.19437 8.68688 10.29891 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.003361 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.580901 B = 8329.862323 C = 8635.205026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.371 6.371 4 C 0.651 3.349 5 O -0.578 6.578 6 N -0.591 5.591 7 C 0.128 3.872 8 C -0.147 4.147 9 C 0.152 3.848 10 N -1.000 6.000 11 C 0.100 3.900 12 S 2.673 3.327 13 O -1.005 7.005 14 O -1.009 7.009 15 C -1.015 5.015 16 H 0.121 0.879 17 C 0.153 3.847 18 N -0.823 5.823 19 Si 0.800 3.200 20 H -0.246 1.246 21 H -0.255 1.255 22 H -0.220 1.220 23 C -0.142 4.142 24 C 0.113 3.887 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.281 0.719 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 -13.157 1.885 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.467 6.467 6 N -0.332 5.332 7 C 0.006 3.994 8 C -0.187 4.187 9 C 0.045 3.955 10 N -0.835 5.835 11 C -0.046 4.046 12 S 2.777 3.223 13 O -0.996 6.996 14 O -0.999 6.999 15 C -1.149 5.149 16 H 0.139 0.861 17 C -0.067 4.067 18 N -0.452 5.452 19 Si 0.620 3.380 20 H -0.170 1.170 21 H -0.179 1.179 22 H -0.142 1.142 23 C -0.182 4.182 24 C -0.010 4.010 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.890 -12.662 1.979 19.646 hybrid contribution 0.598 0.297 0.012 0.668 sum -14.292 -12.365 1.990 19.003 Atomic orbital electron populations 1.21824 0.92642 1.02965 1.03554 1.22919 0.94720 0.78965 1.02690 1.86228 1.22280 1.32886 1.87101 1.17976 0.81047 0.84090 0.76360 1.90976 1.59789 1.39453 1.56521 1.47037 1.07756 1.02961 1.75429 1.21727 0.77034 1.01354 0.99289 1.22438 1.02009 0.95656 0.98566 1.20795 0.92946 0.90492 0.91274 1.57508 1.80201 1.35036 1.10722 1.21277 1.01279 1.00330 0.81699 1.01511 0.77040 0.70643 0.73122 1.93460 1.87721 1.65889 1.52493 1.93391 1.84163 1.81477 1.40870 1.30526 1.15347 1.05033 1.64020 0.86080 1.24433 0.94523 0.98675 0.89020 1.69986 1.04211 1.32318 1.38689 0.87884 0.83293 0.84417 0.82375 1.16993 1.17912 1.14211 1.22309 0.97220 0.99997 0.98681 1.21789 0.94183 0.85680 0.99343 0.91459 0.90113 0.91471 0.91276 0.91279 0.90290 0.88384 0.88806 0.90996 0.87659 0.93592 0.90775 0.91991 0.90902 0.91051 0.89871 0.88893 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.08 0.73 6.19 37.16 0.23 0.96 16 3 O -0.37 -4.31 8.86 -40.31 -0.36 -4.66 16 4 C 0.65 8.94 8.43 54.06 0.46 9.40 16 5 O -0.58 -9.42 15.54 -19.28 -0.30 -9.72 16 6 N -0.59 -7.46 2.97 -178.53 -0.53 -7.99 16 7 C 0.13 1.61 6.42 -3.71 -0.02 1.58 16 8 C -0.15 -2.02 5.34 -26.45 -0.14 -2.16 16 9 C 0.15 2.37 2.47 -67.73 -0.17 2.20 16 10 N -1.00 -18.45 3.07 -114.40 -0.35 -18.80 16 11 C 0.10 1.56 9.38 59.85 0.56 2.12 16 12 S 2.67 64.69 4.14 -107.50 -0.44 64.24 16 13 O -1.01 -26.33 15.09 -57.17 -0.86 -27.19 16 14 O -1.01 -25.67 15.39 -57.17 -0.88 -26.55 16 15 C -1.01 -27.54 10.29 30.60 0.31 -27.22 16 16 H 0.12 3.31 8.06 -52.49 -0.42 2.88 16 17 C 0.15 4.32 5.47 -17.82 -0.10 4.23 16 18 N -0.82 -23.46 13.96 55.43 0.77 -22.68 16 19 Si 0.80 20.29 26.54 -169.99 -4.51 15.78 16 20 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.22 -5.68 5.61 56.52 0.32 -5.36 16 23 C -0.14 -1.79 5.34 -26.59 -0.14 -1.93 16 24 C 0.11 1.25 6.45 -3.69 -0.02 1.23 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.27 7.00 -51.93 -0.36 0.91 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 0.94 6.73 -51.93 -0.35 0.59 16 34 H 0.11 1.77 6.91 -51.93 -0.36 1.41 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 37 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 38 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 40 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.09 0.91 6.93 -51.93 -0.36 0.55 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -33.82 348.78 -7.30 -41.13 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.44 Total: 1.31 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 1.35 Total: -10.12 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.11 Total: -49.48 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -2.40 Total: -68.12 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.51 Total: 15.78 kcal Atomic # 16 Polarization: 64.69 SS G_CDS: -0.44 Total: 64.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.82 -7.30 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.438 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds