Wall clock time and date at job start Fri Apr 10 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 N 1.46500 * 109.41956 * 178.67533 * 9 8 7 11 11 C 1.46501 * 120.00111 * 60.12664 * 10 9 8 12 12 S 1.65605 * 120.00042 * 240.13227 * 10 9 8 13 13 O 1.42100 * 106.39998 * 203.53546 * 12 10 9 14 14 O 1.42100 * 106.40105 * 336.45406 * 12 10 9 15 15 C 1.76195 * 107.21970 * 89.99677 * 12 10 9 16 16 H 1.08000 * 120.00082 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99951 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99953 * 179.97438 * 17 15 12 19 19 Si 1.86792 * 119.99850 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.47081 * 90.00171 * 19 17 15 21 21 H 1.48509 * 109.47008 * 209.99932 * 19 17 15 22 22 H 1.48494 * 109.47499 * 329.99893 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 24 24 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 25 25 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 26 26 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 28 28 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 29 29 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 30 30 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 31 31 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 32 32 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 33 33 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 34 34 H 1.09000 * 109.43268 * 58.76205 * 9 8 7 35 35 H 1.08999 * 109.46832 * 90.00300 * 11 10 9 36 36 H 1.08996 * 109.47225 * 210.00394 * 11 10 9 37 37 H 1.09002 * 109.46810 * 330.00402 * 11 10 9 38 38 H 0.96993 * 120.00125 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.50232 * 301.42239 * 23 9 8 40 40 H 1.09007 * 109.52628 * 181.33900 * 23 9 8 41 41 H 1.08994 * 109.58580 * 353.42544 * 24 6 4 42 42 H 1.09006 * 109.57831 * 113.70037 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 7 5.2357 6.1078 -2.1676 11 6 5.0578 5.6796 -3.5573 12 16 5.8567 7.6067 -1.8360 13 8 5.5994 8.4096 -2.9800 14 8 5.4089 7.9469 -0.5311 15 6 7.6072 7.4349 -1.7323 16 1 8.0645 6.4675 -1.8791 17 6 8.3932 8.5352 -1.4628 18 7 9.6997 8.4068 -1.3849 19 14 7.6022 10.2081 -1.2082 20 1 7.2854 10.3921 0.2309 21 1 8.5408 11.2716 -1.6483 22 1 6.3518 10.2909 -2.0049 23 6 3.3739 4.8767 -1.1676 24 6 2.9817 3.9658 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.6211 3.4617 0.9394 31 1 5.8248 2.0412 -0.1156 32 1 6.7501 4.1575 -1.1217 33 1 5.4671 3.4178 -2.1101 34 1 5.0665 5.6983 -0.1179 35 1 4.0642 5.9666 -3.9015 36 1 5.8113 6.1568 -4.1838 37 1 5.1655 4.5967 -3.6204 38 1 10.2527 9.1809 -1.1956 39 1 3.1753 4.3662 -2.1099 40 1 2.7912 5.7969 -1.1226 41 1 1.9466 3.6455 -0.1172 42 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:45 Heat of formation + Delta-G solvation = -181.521909 kcal Electronic energy + Delta-G solvation = -26289.130306 eV Core-core repulsion = 22395.379578 eV Total energy + Delta-G solvation = -3893.750728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.73079 -39.74135 -37.72802 -37.64666 -36.49410 -36.42469 -35.16647 -32.96914 -32.11937 -31.88505 -28.52927 -27.67598 -25.71808 -24.50604 -23.80347 -22.33494 -20.90083 -20.55867 -19.35439 -19.09224 -18.65980 -18.05699 -17.69883 -17.24448 -16.82473 -15.96376 -15.74127 -15.65956 -15.49828 -15.17678 -15.00939 -14.88769 -14.59984 -14.32632 -14.11632 -13.59303 -13.53192 -13.46457 -13.25419 -13.15175 -13.03849 -12.87401 -12.74951 -12.59089 -12.48477 -12.36025 -12.26108 -11.91628 -11.85494 -11.67131 -11.49284 -11.37420 -11.30799 -11.11413 -9.87078 -9.78953 -8.95467 -7.50358 0.11684 1.05158 1.09762 1.14210 1.21489 1.69700 1.89227 2.41698 2.45540 2.83940 3.38602 3.65090 3.84107 3.86383 4.03969 4.06852 4.10667 4.15457 4.23150 4.31666 4.38404 4.42995 4.59125 4.67281 4.70997 4.75986 4.80840 4.85139 4.92968 4.97348 4.98128 5.04426 5.14165 5.17674 5.36161 5.41672 5.46292 5.46571 5.88324 6.04195 6.25350 6.55809 7.17834 8.22192 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.003361 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.580901 B = 8329.862323 C = 8635.205026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 O -0.368 6.368 4 C 0.649 3.351 5 O -0.609 6.609 6 N -0.590 5.590 7 C 0.131 3.869 8 C -0.139 4.139 9 C 0.142 3.858 10 N -0.995 5.995 11 C 0.091 3.909 12 S 2.694 3.306 13 O -1.027 7.027 14 O -1.023 7.023 15 C -1.035 5.035 16 H 0.105 0.895 17 C 0.108 3.892 18 N -0.855 5.855 19 Si 0.823 3.177 20 H -0.238 1.238 21 H -0.223 1.223 22 H -0.228 1.228 23 C -0.135 4.135 24 C 0.116 3.884 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.290 0.710 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 -13.716 1.899 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 O -0.282 6.282 4 C 0.405 3.595 5 O -0.501 6.501 6 N -0.330 5.330 7 C 0.009 3.991 8 C -0.179 4.179 9 C 0.036 3.964 10 N -0.833 5.833 11 C -0.054 4.054 12 S 2.795 3.205 13 O -1.017 7.017 14 O -1.013 7.013 15 C -1.168 5.168 16 H 0.123 0.877 17 C -0.108 4.108 18 N -0.486 5.486 19 Si 0.640 3.360 20 H -0.161 1.161 21 H -0.145 1.145 22 H -0.151 1.151 23 C -0.175 4.175 24 C -0.006 4.006 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.049 -13.199 1.996 21.653 hybrid contribution 1.233 0.330 -0.010 1.276 sum -15.816 -12.869 1.985 20.487 Atomic orbital electron populations 1.21834 0.90120 1.04455 1.03756 1.23222 0.96599 0.77769 1.02504 1.86245 1.20831 1.34474 1.86681 1.18109 0.81567 0.83920 0.75953 1.90954 1.60674 1.40494 1.57959 1.47084 1.07786 1.03194 1.74926 1.21656 0.77442 1.00849 0.99138 1.22346 1.00921 0.95051 0.99609 1.21085 0.95487 0.90271 0.89582 1.57148 1.79445 1.33870 1.12789 1.21551 1.02040 1.02153 0.79665 1.00721 0.75546 0.71900 0.72332 1.93423 1.87486 1.67719 1.53058 1.93360 1.83732 1.82650 1.41608 1.31089 1.17991 1.04336 1.63353 0.87652 1.25168 0.95118 1.01441 0.89101 1.70017 1.05068 1.33710 1.39788 0.87525 0.83136 0.82596 0.82770 1.16109 1.14510 1.15075 1.22262 0.94576 1.00669 0.99989 1.21890 0.94788 0.84827 0.99132 0.91250 0.87980 0.91196 0.91566 0.91494 0.89478 0.88737 0.90196 0.90050 0.89206 0.91489 0.92164 0.88968 0.89947 0.89889 0.89455 0.86971 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.07 1.18 6.19 71.98 0.45 1.63 16 3 O -0.37 -7.80 8.86 -55.46 -0.49 -8.29 16 4 C 0.65 16.81 8.43 129.79 1.09 17.90 16 5 O -0.61 -19.33 15.54 19.81 0.31 -19.02 16 6 N -0.59 -13.74 2.97 -949.17 -2.82 -16.56 16 7 C 0.13 3.16 6.42 86.36 0.55 3.71 16 8 C -0.14 -3.68 5.34 30.78 0.16 -3.52 16 9 C 0.14 4.22 2.47 45.12 0.11 4.33 16 10 N -0.99 -35.63 3.07 -515.85 -1.58 -37.21 16 11 C 0.09 2.66 9.38 127.77 1.20 3.86 16 12 S 2.69 129.70 4.14 -56.49 -0.23 129.46 16 13 O -1.03 -53.36 15.09 -128.00 -1.93 -55.29 16 14 O -1.02 -51.66 15.39 -128.00 -1.97 -53.63 16 15 C -1.04 -57.15 10.29 67.74 0.70 -56.45 16 16 H 0.11 5.95 8.06 -2.91 -0.02 5.93 16 17 C 0.11 6.16 5.47 84.66 0.46 6.63 16 18 N -0.86 -49.33 13.96 21.45 0.30 -49.03 16 19 Si 0.82 40.70 26.54 68.60 1.82 42.52 16 20 H -0.24 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.22 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.23 -11.58 5.61 99.48 0.56 -11.02 16 23 C -0.14 -3.04 5.34 30.68 0.16 -2.88 16 24 C 0.12 2.25 6.45 86.37 0.56 2.81 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.09 2.38 7.00 -2.39 -0.02 2.37 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 1.98 6.73 -2.39 -0.02 1.96 16 34 H 0.09 2.96 6.91 -2.39 -0.02 2.95 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.94 7.79 -2.39 -0.02 1.92 16 37 H 0.09 2.14 6.46 -2.39 -0.02 2.12 16 38 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.08 1.70 7.72 -2.39 -0.02 1.68 16 40 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.11 1.80 6.93 -2.39 -0.02 1.79 16 42 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -72.48 348.78 0.45 -72.03 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.87 Total: 17.62 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 6.19 Total: -22.59 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -4.11 Total: -102.80 kcal Atomic # 8 Polarization: -132.15 SS G_CDS: -4.09 Total: -136.23 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.82 Total: 42.52 kcal Atomic # 16 Polarization: 129.70 SS G_CDS: -0.23 Total: 129.46 kcal Total: -72.48 0.45 -72.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.493 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds