Wall clock time and date at job start Fri Apr 10 2020 18:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47062 * 2 1 4 4 C 1.34778 * 119.99546 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00615 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99360 * 179.97438 * 4 3 2 7 7 O 1.42901 * 109.47066 * 179.97438 * 6 4 3 8 8 C 1.42897 * 114.00362 * 179.97438 * 7 6 4 9 9 C 1.53042 * 109.46182 * 209.99863 * 8 7 6 10 10 C 1.53190 * 109.31216 * 178.62936 * 9 8 7 11 11 N 1.46921 * 108.77654 * 54.63578 * 10 9 8 12 12 S 1.65606 * 120.63289 * 126.36965 * 11 10 9 13 13 O 1.42105 * 106.40008 * 336.45758 * 12 11 10 14 14 O 1.42098 * 106.40370 * 203.53944 * 12 11 10 15 15 C 1.76193 * 107.21910 * 89.99915 * 12 11 10 16 16 H 1.08002 * 120.00351 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00314 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46652 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47242 * 119.99675 * 19 17 15 22 22 H 1.48499 * 109.47269 * 239.99877 * 19 17 15 23 23 C 1.46923 * 118.74101 * 306.64369 * 11 10 9 24 24 C 1.52760 * 109.00861 * 53.30804 * 23 11 10 25 25 H 1.09002 * 109.46431 * 299.99882 * 1 2 3 26 26 H 1.08996 * 109.46557 * 59.99883 * 1 2 3 27 27 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46431 * 240.00118 * 2 1 3 29 29 H 1.08996 * 109.46958 * 120.00477 * 2 1 3 30 30 H 0.97002 * 119.99964 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47679 * 59.99993 * 6 4 3 32 32 H 1.09006 * 109.47677 * 299.99719 * 6 4 3 33 33 H 1.08998 * 109.45847 * 329.97112 * 8 7 6 34 34 H 1.08998 * 109.49686 * 58.67485 * 9 8 7 35 35 H 1.09001 * 109.49965 * 298.58131 * 9 8 7 36 36 H 1.08997 * 109.58822 * 294.84662 * 10 9 8 37 37 H 1.08998 * 109.70344 * 174.49077 * 10 9 8 38 38 H 0.96997 * 119.99726 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59343 * 173.14863 * 23 11 10 40 40 H 1.09010 * 109.58634 * 293.56962 * 23 11 10 41 41 H 1.09006 * 109.56563 * 185.55777 * 24 23 11 42 42 H 1.09001 * 109.35973 * 65.50306 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1317 0.7056 -0.0015 6 6 3.8458 3.0482 -0.0011 7 8 5.2748 3.0483 -0.0010 8 6 5.8561 4.3537 -0.0021 9 6 7.2051 4.3105 -0.7234 10 6 7.8093 5.7180 -0.7526 11 7 7.8761 6.2325 0.6219 12 16 9.3032 6.7993 1.2423 13 8 10.3402 6.1818 0.4920 14 8 9.1970 6.6927 2.6552 15 6 9.3831 8.5212 0.8778 16 1 8.5767 8.9974 0.3397 17 6 10.4750 9.2611 1.2795 18 7 11.4568 8.6815 1.9353 19 14 10.5601 11.0866 0.8926 20 1 9.3392 11.4926 0.1509 21 1 10.6500 11.8573 2.1587 22 1 11.7587 11.3608 0.0599 23 6 6.6543 6.2291 1.4378 24 6 6.0618 4.8211 1.4406 25 1 -0.3632 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3881 2.1185 -0.0004 31 1 3.4828 3.5624 0.8888 32 1 3.4822 3.5619 -0.8912 33 1 5.1910 5.0469 -0.5171 34 1 7.0609 3.9552 -1.7437 35 1 7.8790 3.6363 -0.1948 36 1 7.1819 6.3725 -1.3577 37 1 8.8124 5.6786 -1.1772 38 1 12.2248 9.2020 2.2182 39 1 6.8957 6.5246 2.4588 40 1 5.9306 6.9262 1.0150 41 1 5.1038 4.8292 1.9605 42 1 6.7464 4.1421 1.9490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:51 Heat of formation + Delta-G solvation = -178.617729 kcal Electronic energy + Delta-G solvation = -25244.746348 eV Core-core repulsion = 21351.121555 eV Total energy + Delta-G solvation = -3893.624793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.03146 -38.78745 -36.45067 -35.50260 -35.29286 -33.94211 -33.07350 -31.56600 -30.82938 -30.77241 -27.75612 -26.11151 -23.61512 -23.16138 -22.92005 -21.00159 -20.21083 -18.77896 -17.70666 -17.06846 -17.05158 -16.33237 -16.31350 -15.80921 -15.27095 -15.04317 -14.96010 -14.46999 -14.27764 -14.05870 -13.72692 -13.38654 -13.20507 -12.97449 -12.91212 -12.64947 -12.28419 -12.02211 -12.00659 -11.88730 -11.61570 -11.24065 -11.19441 -11.01554 -10.97772 -10.59449 -10.51699 -10.27336 -10.12290 -10.08779 -9.94749 -9.51087 -9.40953 -9.25646 -8.91196 -8.24183 -6.69330 -5.31474 2.26015 2.38548 2.55517 3.05089 3.13393 3.20277 3.78819 4.05578 4.42101 4.51663 4.62340 4.64026 4.64334 4.85424 4.88150 4.89640 4.99564 5.04421 5.22936 5.37189 5.39384 5.46806 5.58193 5.63789 5.64351 5.73291 5.90304 5.97068 5.99891 6.05748 6.13135 6.18983 6.36290 6.48370 6.51564 6.80481 6.99843 7.22488 7.32770 7.57745 7.96430 7.98217 8.89422 10.24172 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.038658 B = 0.002462 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.125019 B =11368.759943 C =11527.139045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.735 5.735 4 C 0.512 3.488 5 O -0.515 6.515 6 C 0.044 3.956 7 O -0.358 6.358 8 C 0.093 3.907 9 C -0.128 4.128 10 C 0.127 3.873 11 N -1.013 6.013 12 S 2.714 3.286 13 O -1.003 7.003 14 O -1.003 7.003 15 C -1.019 5.019 16 H 0.102 0.898 17 C 0.131 3.869 18 N -0.845 5.845 19 Si 0.921 3.079 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.271 1.271 23 C 0.127 3.873 24 C -0.155 4.155 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.400 0.600 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.290 0.710 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.040 -8.579 -5.427 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.391 5.391 4 C 0.297 3.703 5 O -0.389 6.389 6 C -0.036 4.036 7 O -0.276 6.276 8 C 0.036 3.964 9 C -0.167 4.167 10 C 0.001 3.999 11 N -0.848 5.848 12 S 2.816 3.184 13 O -0.993 6.993 14 O -0.994 6.994 15 C -1.153 5.153 16 H 0.120 0.880 17 C -0.087 4.087 18 N -0.475 5.475 19 Si 0.745 3.255 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.194 4.194 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.234 0.766 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.518 -9.989 -4.873 23.335 hybrid contribution -0.763 2.087 -0.392 2.257 sum -21.281 -7.901 -5.265 23.303 Atomic orbital electron populations 1.22009 0.94319 1.03339 1.02563 1.21297 0.94203 0.82749 1.02597 1.45953 1.06827 1.09113 1.77189 1.20426 0.82207 0.91252 0.76374 1.90750 1.55088 1.46075 1.46973 1.22184 0.84953 0.94038 1.02455 1.88069 1.15882 1.28524 1.95123 1.22199 0.94989 0.83143 0.96095 1.21976 0.95205 0.98684 1.00832 1.21217 1.02666 0.92424 0.83607 1.58232 1.26365 1.79007 1.21225 1.00536 0.69597 0.75862 0.72446 1.93350 1.53725 1.79052 1.73160 1.93345 1.85230 1.89015 1.31777 1.30652 1.13590 1.19970 1.51064 0.87962 1.24774 0.92674 1.01281 0.89923 1.69911 1.07765 1.38733 1.31080 0.86131 0.79078 0.81375 0.78943 1.18660 1.19636 1.19623 1.21092 0.86945 0.95090 0.96829 1.22355 1.01601 0.98566 0.96870 0.91894 0.91924 0.90705 0.91434 0.91402 0.76554 0.90305 0.90377 0.91885 0.90535 0.90420 0.92234 0.88180 0.89942 0.88455 0.92379 0.91295 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 10.03 37.16 0.37 -0.22 16 2 C 0.11 0.77 6.39 -4.04 -0.03 0.74 16 3 N -0.74 -5.25 5.56 -60.29 -0.33 -5.59 16 4 C 0.51 5.77 7.91 -10.98 -0.09 5.68 16 5 O -0.52 -8.47 16.50 -14.35 -0.24 -8.71 16 6 C 0.04 0.42 6.23 36.01 0.22 0.65 16 7 O -0.36 -5.04 9.52 -55.14 -0.52 -5.57 16 8 C 0.09 1.24 2.57 -26.69 -0.07 1.17 16 9 C -0.13 -1.90 5.73 -26.61 -0.15 -2.05 16 10 C 0.13 2.13 6.48 -3.71 -0.02 2.11 16 11 N -1.01 -20.19 3.30 -113.77 -0.37 -20.56 16 12 S 2.71 71.75 5.01 -107.50 -0.54 71.22 16 13 O -1.00 -29.12 16.61 -57.17 -0.95 -30.07 16 14 O -1.00 -29.07 16.60 -57.17 -0.95 -30.02 16 15 C -1.02 -27.82 9.75 30.60 0.30 -27.52 16 16 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 17 C 0.13 3.65 5.46 -17.81 -0.10 3.56 16 18 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 19 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C 0.13 2.10 6.45 -3.93 -0.03 2.07 16 24 C -0.15 -2.21 5.68 -26.83 -0.15 -2.36 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 1.52 8.47 -40.82 -0.35 1.17 16 31 H 0.08 0.58 7.84 -51.93 -0.41 0.18 16 32 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.81 6.92 -51.93 -0.36 1.45 16 38 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 40 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.07 0.78 7.84 -51.93 -0.41 0.38 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -38.76 361.20 -8.97 -47.73 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.47 Total: 0.99 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 0.26 Total: -16.17 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.02 Total: -50.28 kcal Atomic # 8 Polarization: -71.70 SS G_CDS: -2.66 Total: -74.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 71.75 SS G_CDS: -0.54 Total: 71.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.76 -8.97 -47.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.893 kcal (2) G-P(sol) polarization free energy of solvation -38.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds