Wall clock time and date at job start Fri Apr 10 2020 18:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47062 * 2 1 4 4 C 1.34778 * 119.99546 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00615 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99360 * 179.97438 * 4 3 2 7 7 O 1.42901 * 109.47066 * 179.97438 * 6 4 3 8 8 C 1.42897 * 114.00362 * 179.97438 * 7 6 4 9 9 C 1.53042 * 109.46182 * 209.99863 * 8 7 6 10 10 C 1.53190 * 109.31216 * 178.62936 * 9 8 7 11 11 N 1.46921 * 108.77654 * 54.63578 * 10 9 8 12 12 S 1.65606 * 120.63289 * 126.36965 * 11 10 9 13 13 O 1.42105 * 106.40008 * 336.45758 * 12 11 10 14 14 O 1.42098 * 106.40370 * 203.53944 * 12 11 10 15 15 C 1.76193 * 107.21910 * 89.99915 * 12 11 10 16 16 H 1.08002 * 120.00351 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00314 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46652 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47242 * 119.99675 * 19 17 15 22 22 H 1.48499 * 109.47269 * 239.99877 * 19 17 15 23 23 C 1.46923 * 118.74101 * 306.64369 * 11 10 9 24 24 C 1.52760 * 109.00861 * 53.30804 * 23 11 10 25 25 H 1.09002 * 109.46431 * 299.99882 * 1 2 3 26 26 H 1.08996 * 109.46557 * 59.99883 * 1 2 3 27 27 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46431 * 240.00118 * 2 1 3 29 29 H 1.08996 * 109.46958 * 120.00477 * 2 1 3 30 30 H 0.97002 * 119.99964 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47679 * 59.99993 * 6 4 3 32 32 H 1.09006 * 109.47677 * 299.99719 * 6 4 3 33 33 H 1.08998 * 109.45847 * 329.97112 * 8 7 6 34 34 H 1.08998 * 109.49686 * 58.67485 * 9 8 7 35 35 H 1.09001 * 109.49965 * 298.58131 * 9 8 7 36 36 H 1.08997 * 109.58822 * 294.84662 * 10 9 8 37 37 H 1.08998 * 109.70344 * 174.49077 * 10 9 8 38 38 H 0.96997 * 119.99726 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59343 * 173.14863 * 23 11 10 40 40 H 1.09010 * 109.58634 * 293.56962 * 23 11 10 41 41 H 1.09006 * 109.56563 * 185.55777 * 24 23 11 42 42 H 1.09001 * 109.35973 * 65.50306 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1317 0.7056 -0.0015 6 6 3.8458 3.0482 -0.0011 7 8 5.2748 3.0483 -0.0010 8 6 5.8561 4.3537 -0.0021 9 6 7.2051 4.3105 -0.7234 10 6 7.8093 5.7180 -0.7526 11 7 7.8761 6.2325 0.6219 12 16 9.3032 6.7993 1.2423 13 8 10.3402 6.1818 0.4920 14 8 9.1970 6.6927 2.6552 15 6 9.3831 8.5212 0.8778 16 1 8.5767 8.9974 0.3397 17 6 10.4750 9.2611 1.2795 18 7 11.4568 8.6815 1.9353 19 14 10.5601 11.0866 0.8926 20 1 9.3392 11.4926 0.1509 21 1 10.6500 11.8573 2.1587 22 1 11.7587 11.3608 0.0599 23 6 6.6543 6.2291 1.4378 24 6 6.0618 4.8211 1.4406 25 1 -0.3632 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3881 2.1185 -0.0004 31 1 3.4828 3.5624 0.8888 32 1 3.4822 3.5619 -0.8912 33 1 5.1910 5.0469 -0.5171 34 1 7.0609 3.9552 -1.7437 35 1 7.8790 3.6363 -0.1948 36 1 7.1819 6.3725 -1.3577 37 1 8.8124 5.6786 -1.1772 38 1 12.2248 9.2020 2.2182 39 1 6.8957 6.5246 2.4588 40 1 5.9306 6.9262 1.0150 41 1 5.1038 4.8292 1.9605 42 1 6.7464 4.1421 1.9490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:50 Heat of formation + Delta-G solvation = -210.812958 kcal Electronic energy + Delta-G solvation = -25246.142438 eV Core-core repulsion = 21351.121555 eV Total energy + Delta-G solvation = -3895.020883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.89625 -39.87165 -37.59055 -37.46138 -36.26065 -36.12032 -35.15824 -32.55389 -32.04263 -31.67689 -28.51041 -28.22795 -24.77057 -24.31236 -23.61743 -21.80717 -21.45969 -20.73809 -19.16405 -18.46876 -18.01700 -17.85639 -17.11542 -17.06243 -16.60948 -16.59115 -15.99351 -15.88705 -15.42860 -15.27099 -15.15750 -14.86045 -14.34334 -14.01086 -13.93478 -13.85349 -13.35971 -13.31314 -13.22647 -13.02019 -12.90704 -12.68238 -12.51758 -12.46683 -12.37613 -12.26256 -12.17801 -12.04270 -11.79641 -11.43630 -11.25939 -10.92230 -10.87789 -10.50096 -10.12551 -9.79948 -8.73091 -7.47167 0.31490 1.34518 1.35218 1.53301 1.57078 1.84724 2.21756 2.58757 2.81739 2.99716 3.72899 3.80279 3.84060 3.87897 4.09501 4.14963 4.18120 4.21227 4.29484 4.35717 4.41198 4.41945 4.49124 4.52765 4.60203 4.77164 4.82750 4.87405 4.95161 5.00878 5.06668 5.17887 5.24155 5.27950 5.32737 5.39597 5.44155 5.92919 6.01425 6.17220 6.57746 6.79243 7.24850 8.22100 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.038658 B = 0.002462 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.125019 B =11368.759943 C =11527.139045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.714 5.714 4 C 0.506 3.494 5 O -0.581 6.581 6 C 0.038 3.962 7 O -0.390 6.390 8 C 0.100 3.900 9 C -0.128 4.128 10 C 0.121 3.879 11 N -1.011 6.011 12 S 2.713 3.287 13 O -1.044 7.044 14 O -1.043 7.043 15 C -1.034 5.034 16 H 0.123 0.877 17 C 0.065 3.935 18 N -0.897 5.897 19 Si 0.994 3.006 20 H -0.243 1.243 21 H -0.261 1.261 22 H -0.262 1.262 23 C 0.119 3.881 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.420 0.580 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.298 0.702 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.835 -6.446 -6.943 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.370 5.370 4 C 0.292 3.708 5 O -0.460 6.460 6 C -0.041 4.041 7 O -0.309 6.309 8 C 0.043 3.957 9 C -0.167 4.167 10 C -0.004 4.004 11 N -0.850 5.850 12 S 2.816 3.184 13 O -1.034 7.034 14 O -1.033 7.033 15 C -1.168 5.168 16 H 0.141 0.859 17 C -0.148 4.148 18 N -0.529 5.529 19 Si 0.812 3.188 20 H -0.166 1.166 21 H -0.185 1.185 22 H -0.186 1.186 23 C -0.006 4.006 24 C -0.191 4.191 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.258 0.742 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.382 -7.856 -6.385 26.400 hybrid contribution 0.295 1.303 0.070 1.338 sum -24.086 -6.553 -6.315 25.748 Atomic orbital electron populations 1.21952 0.91428 1.04215 1.03562 1.21378 0.96451 0.82317 1.01245 1.45845 1.05992 1.10093 1.75063 1.20931 0.82882 0.91549 0.75397 1.90728 1.56891 1.47977 1.50400 1.22509 0.82773 0.93210 1.05591 1.88040 1.18663 1.28850 1.95325 1.22105 0.94637 0.83889 0.95080 1.21947 0.95910 0.96647 1.02215 1.21476 1.02545 0.94338 0.82005 1.57717 1.25559 1.78828 1.22885 1.00115 0.70560 0.76069 0.71616 1.93286 1.56730 1.79747 1.73626 1.93282 1.86310 1.89448 1.34263 1.30984 1.14357 1.20398 1.51060 0.85870 1.26112 0.92042 1.07288 0.89312 1.70020 1.08927 1.41220 1.32708 0.85049 0.80133 0.74178 0.79436 1.16574 1.18497 1.18597 1.21407 0.86115 0.97611 0.95500 1.22344 1.02338 0.96188 0.98224 0.90929 0.90763 0.89981 0.92769 0.93003 0.74205 0.87327 0.86605 0.87699 0.88123 0.93805 0.88087 0.90585 0.89212 0.90755 0.88113 0.87569 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.03 71.99 0.72 -0.01 16 2 C 0.11 1.36 6.39 86.38 0.55 1.91 16 3 N -0.71 -8.62 5.56 -463.05 -2.57 -11.20 16 4 C 0.51 10.62 7.91 87.66 0.69 11.31 16 5 O -0.58 -19.45 16.50 16.02 0.26 -19.19 16 6 C 0.04 0.60 6.23 71.24 0.44 1.04 16 7 O -0.39 -10.14 9.52 -129.94 -1.24 -11.38 16 8 C 0.10 2.36 2.57 30.62 0.08 2.44 16 9 C -0.13 -3.67 5.73 30.67 0.18 -3.50 16 10 C 0.12 3.93 6.48 86.36 0.56 4.49 16 11 N -1.01 -39.97 3.30 -513.86 -1.69 -41.67 16 12 S 2.71 148.14 5.01 -56.49 -0.28 147.86 16 13 O -1.04 -63.67 16.61 -128.00 -2.13 -65.79 16 14 O -1.04 -63.24 16.60 -128.00 -2.12 -65.36 16 15 C -1.03 -56.50 9.75 67.74 0.66 -55.84 16 16 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 17 C 0.06 3.61 5.46 84.65 0.46 4.07 16 18 N -0.90 -54.20 13.19 21.45 0.28 -53.92 16 19 Si 0.99 40.96 29.54 68.60 2.03 42.99 16 20 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 C 0.12 3.72 6.45 86.22 0.56 4.27 16 24 C -0.15 -4.04 5.68 30.53 0.17 -3.86 16 25 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 1.65 8.47 -92.71 -0.79 0.87 16 31 H 0.11 1.06 7.84 -2.39 -0.02 1.04 16 32 H 0.12 0.96 8.08 -2.38 -0.02 0.94 16 33 H 0.11 1.64 7.79 -2.39 -0.02 1.62 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.81 6.92 -2.39 -0.02 2.80 16 38 H 0.30 16.13 8.31 -92.71 -0.77 15.35 16 39 H 0.07 2.67 6.91 -2.39 -0.02 2.65 16 40 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.11 2.02 7.84 -2.38 -0.02 2.00 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -91.12 361.20 -2.15 -93.27 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.24 Total: 18.06 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 5.08 Total: -33.68 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -3.98 Total: -106.78 kcal Atomic # 8 Polarization: -156.50 SS G_CDS: -5.22 Total: -161.73 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 148.14 SS G_CDS: -0.28 Total: 147.86 kcal Total: -91.12 -2.15 -93.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.544 kcal (2) G-P(sol) polarization free energy of solvation -91.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds