Wall clock time and date at job start Fri Apr 10 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47387 * 2 1 4 4 C 1.53006 * 109.46942 * 240.00238 * 2 1 3 5 5 O 1.45204 * 109.47147 * 120.00396 * 2 1 3 6 6 C 1.34640 * 116.99801 * 60.00163 * 5 2 1 7 7 O 1.21511 * 119.99978 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99847 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00042 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.90742 * 23.74973 * 9 8 6 11 11 C 1.53787 * 113.61128 * 154.99929 * 9 8 6 12 12 C 1.53784 * 87.07923 * 139.98386 * 11 9 8 13 13 H 1.09004 * 113.61162 * 220.01809 * 12 11 9 14 14 N 1.46499 * 113.61434 * 89.11404 * 12 11 9 15 15 S 1.65595 * 119.99842 * 145.00050 * 14 12 11 16 16 O 1.42109 * 106.40358 * 178.53854 * 15 14 12 17 17 O 1.42099 * 106.40318 * 311.45792 * 15 14 12 18 18 C 1.76205 * 107.22094 * 65.00049 * 15 14 12 19 19 H 1.07996 * 119.99635 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00079 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99882 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99858 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47121 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47325 * 119.99982 * 22 20 18 25 25 H 1.48501 * 109.46866 * 239.99895 * 22 20 18 26 26 C 1.53779 * 87.08045 * 334.56667 * 12 11 9 27 27 H 1.08995 * 109.46763 * 299.99908 * 1 2 3 28 28 H 1.09000 * 109.46816 * 59.99711 * 1 2 3 29 29 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47594 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47464 * 300.00669 * 3 2 1 32 32 H 1.09008 * 109.46836 * 60.00201 * 3 2 1 33 33 H 1.09005 * 109.47142 * 300.00318 * 4 2 1 34 34 H 1.09000 * 109.47324 * 60.00362 * 4 2 1 35 35 H 1.09002 * 109.47230 * 180.02562 * 4 2 1 36 36 H 0.97005 * 119.99829 * 359.97438 * 8 6 5 37 37 H 1.09004 * 113.61202 * 254.53139 * 11 9 8 38 38 H 1.08994 * 113.61447 * 25.43570 * 11 9 8 39 39 H 0.96998 * 120.00234 * 325.00078 * 14 12 11 40 40 H 0.97003 * 119.99463 * 180.02562 * 21 20 18 41 41 H 1.09006 * 113.61307 * 270.88660 * 26 12 11 42 42 H 1.09007 * 113.61642 * 139.98417 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9725 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0672 -2.6656 2.4169 9 6 1.6732 -4.0668 2.5833 10 1 1.4198 -4.5511 1.6403 11 6 2.6461 -4.8813 3.4522 12 6 1.4083 -5.5540 4.0690 13 1 1.4877 -5.7120 5.1446 14 7 0.9704 -6.7513 3.3474 15 16 0.3322 -8.0326 4.1799 16 8 -0.0214 -9.0069 3.2076 17 8 1.2226 -8.2958 5.2556 18 6 -1.1767 -7.4837 4.9057 19 1 -1.5096 -6.4674 4.7555 20 6 -1.9316 -8.3513 5.6661 21 7 -1.5258 -9.5888 5.8493 22 14 -3.5316 -7.7695 6.4349 23 1 -3.7623 -6.3461 6.0802 24 1 -4.6551 -8.5956 5.9248 25 1 -3.4488 -7.9040 7.9115 26 6 0.6268 -4.2854 3.6888 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 2.6268 -2.2367 3.0832 37 1 3.2750 -5.5640 2.8808 38 1 3.2117 -4.2751 4.1598 39 1 1.0543 -6.7936 2.3819 40 1 -2.0572 -10.1992 6.3840 41 1 0.6404 -3.5162 4.4611 42 1 -0.3747 -4.4870 3.3084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:59 Heat of formation + Delta-G solvation = -159.601901 kcal Electronic energy + Delta-G solvation = -25484.347616 eV Core-core repulsion = 21591.547411 eV Total energy + Delta-G solvation = -3892.800205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.91350 -39.30853 -37.01278 -35.19076 -34.53979 -33.94948 -33.66282 -33.07339 -31.09397 -27.66345 -27.58808 -26.16366 -25.55889 -24.66901 -22.15503 -20.38080 -19.54126 -19.03465 -18.17900 -17.67438 -16.75989 -16.26941 -16.21588 -15.58619 -15.49381 -14.81027 -14.76359 -14.59016 -14.01939 -13.81400 -13.72584 -13.26694 -12.94049 -12.75963 -12.52759 -12.35808 -12.13995 -12.12867 -12.09929 -12.00872 -11.68726 -11.49489 -11.22985 -11.19536 -10.87584 -10.58135 -10.54798 -10.52339 -10.29174 -10.27343 -10.16811 -10.07441 -9.24833 -9.14403 -8.99297 -8.53367 -6.69444 -5.30583 2.08750 2.32218 2.77139 3.06348 3.15014 3.22139 4.03357 4.06704 4.47931 4.51311 4.52975 4.62847 4.66432 4.66655 4.71619 5.06384 5.12736 5.20575 5.28921 5.35391 5.43721 5.51638 5.63162 5.70610 5.72577 5.73037 5.78088 5.90306 5.97824 6.04297 6.08048 6.14362 6.25478 6.35643 6.45527 6.60237 6.87872 7.33722 7.37197 7.87010 8.00051 8.32711 8.90692 10.24779 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.002912 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.071591 B = 9611.772281 C =10247.112293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.647 3.353 7 O -0.567 6.567 8 N -0.698 5.698 9 C 0.136 3.864 10 H 0.119 0.881 11 C -0.154 4.154 12 C 0.147 3.853 13 H 0.114 0.886 14 N -1.118 6.118 15 S 2.715 3.285 16 O -1.005 7.005 17 O -1.006 7.006 18 C -1.017 5.017 19 H 0.104 0.896 20 C 0.133 3.867 21 N -0.846 5.846 22 Si 0.920 3.080 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.170 4.170 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.405 0.595 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.402 0.598 40 H 0.290 0.710 41 H 0.091 0.909 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 20.465 -8.040 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.401 3.599 7 O -0.456 6.456 8 N -0.356 5.356 9 C 0.033 3.967 10 H 0.137 0.863 11 C -0.195 4.195 12 C 0.036 3.964 13 H 0.132 0.868 14 N -0.869 5.869 15 S 2.815 3.185 16 O -0.996 6.996 17 O -0.996 6.996 18 C -1.151 5.151 19 H 0.122 0.878 20 C -0.085 4.085 21 N -0.476 5.476 22 Si 0.744 3.256 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.211 4.211 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.239 0.761 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.233 0.767 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.282 19.213 -8.194 22.120 hybrid contribution -1.090 0.987 0.331 1.507 sum 6.192 20.200 -7.863 22.543 Atomic orbital electron populations 1.22522 0.93955 1.05290 1.02387 1.22041 0.94414 0.91416 0.82184 1.21857 1.02157 0.92667 1.03066 1.22522 1.01451 1.03679 0.96441 1.86293 1.71680 1.23926 1.46435 1.18207 0.78899 0.80395 0.82449 1.90909 1.40914 1.70307 1.43443 1.44887 1.55078 1.12477 1.23138 1.22771 0.96417 0.77996 0.99528 0.86316 1.23823 0.97595 0.98832 0.99207 1.21153 0.93159 0.84664 0.97378 0.86841 1.55900 1.80467 1.32162 1.18388 1.00455 0.74982 0.70622 0.72470 1.93383 1.85252 1.57943 1.62999 1.93362 1.67586 1.83354 1.55273 1.30581 1.29213 1.08224 1.47065 0.87819 1.24742 0.98552 0.93209 0.92007 1.69907 1.38760 1.04743 1.34149 0.86142 0.80719 0.79863 0.78886 1.18622 1.19686 1.19686 1.24070 1.00111 0.98570 0.98372 0.92186 0.91238 0.89184 0.91541 0.90214 0.91508 0.89246 0.91222 0.92255 0.76051 0.89890 0.88631 0.76664 0.89977 0.89020 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 5 O -0.37 -4.20 9.94 -40.33 -0.40 -4.60 16 6 C 0.65 8.35 8.06 54.05 0.44 8.79 16 7 O -0.57 -8.73 11.48 -19.28 -0.22 -8.96 16 8 N -0.70 -7.60 5.36 -57.93 -0.31 -7.91 16 9 C 0.14 1.66 4.06 -67.12 -0.27 1.39 16 10 H 0.12 1.62 7.43 -51.93 -0.39 1.23 16 11 C -0.15 -1.78 7.62 -25.91 -0.20 -1.97 16 12 C 0.15 2.26 4.51 -67.12 -0.30 1.96 16 13 H 0.11 1.84 7.77 -51.93 -0.40 1.44 16 14 N -1.12 -20.80 5.73 -4.20 -0.02 -20.83 16 15 S 2.72 69.48 4.99 -107.50 -0.54 68.95 16 16 O -1.01 -28.97 18.02 -57.17 -1.03 -30.00 16 17 O -1.01 -28.34 17.54 -57.17 -1.00 -29.35 16 18 C -1.02 -27.20 9.72 30.60 0.30 -26.90 16 19 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 20 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 21 N -0.85 -24.62 13.19 55.43 0.73 -23.89 16 22 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 C -0.17 -2.30 7.68 -25.92 -0.20 -2.50 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.40 3.35 8.84 -40.82 -0.36 2.99 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.86 8.12 -51.93 -0.42 0.43 16 39 H 0.40 6.58 8.78 -34.46 -0.30 6.28 16 40 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -35.94 361.18 -8.12 -44.06 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.26 Total: 9.73 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 0.51 Total: -18.03 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.40 Total: -52.63 kcal Atomic # 8 Polarization: -70.25 SS G_CDS: -2.66 Total: -72.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 69.48 SS G_CDS: -0.54 Total: 68.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.94 -8.12 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.543 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds